BAC Information

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BAC

Clone NameB6Ng01-172I18
Chromosome5 (Build37)
Map Location 123,169,578 - 123,358,674
singlet/doubletdoublet
Overlap geneP2rx4, Camkk2, Anapc5, Rnf34, Fbxl10
Upstream geneAtxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7
Downstream geneLOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172I18.bB6Ng01-172I18.g
ACCGA001133GA001134
length4991,110
definitionB6Ng01-172I18.b B6Ng01-172I18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,358,170 - 123,358,674)(123,169,578 - 123,170,686)
sequence
cactgtgtgtatatataacccagttttatatataccacatttcgcttagc
tgtttgtcaacagacacttggctttcttttaccatagtgggttttttttt
gtctctcccccacccctacaaggtttctctgaaaactcaaaaattggcct
gcctctgtctcccaagtgctgggattaaaggtgtgcgctaccacgcccgg
cttcaaaagatttaaaaatacacacatgcatacatacccagtgtggtggt
atgttgtacactttttttttttaaaaagatttatttatttatgtatgtga
gtatactttagctgtacagatggttgtgaaccttcatatggttgttggaa
attgaattttagaacctctgctcactctggtcccactagctcaggcccaa
aaatttattattacacataagtacactgtagcttactgcagatacaccag
aagagggcaccagatcctattgctgttgttgtgagccacagtgtggttg
gaattcactctgtaggccaggctggcttcaaattcagagctatgcctgcc
tctgcctcccgagtgctgggactaaagatgcgtgtgaccaccatcctgct
ggtcttgtatcttttttaaagatcctcaatatgtactccgggatggcttt
gaatttttttgatattttttaaattacatttgtatgtgtataattatgaa
gtttggaaaataacttgcgagtcagccccctccgtctaccattttggacc
aggaatggaattcaaatcctttggcatcgcagcaagttatttacccactg
agtcacagcagcagccaagcccaaactcttttttttttttttaattttaa
atttatttttttacactctatattttatccacccgcccccatccatcctc
cgactgttccatatcccatatctcctcctcactcccctgtctccatgtgg
atgtccccaccccctaccccacctgacctctaaactccctggggcctcca
gtctcttgagggttaggtgcatcatctctgaatgaacatagacccagcag
tcctctgctgcatatgtattagtggcctcatatcagctgaaatatgctac
ctgcttggtggaccagtgttcgagagatctcaggggtccagatttattga
gactgctggtcctcctacagggtcgcccttctcctcagcctctttcagcc
tttccctagttcaccccacaggggtcatctgcttctgtccatttcctgcc
tcagctttccaagtattgggaacactggcataagctatcataacctggct
tgggtgtctcaagcaccatgcccacataacccccaacccaacacacacac
acacacacacacacacacacacacggacacacatacacacacacacgcac
tcacacactcacgcacacacgcattcagcacagaaaagactgagccaggc
taggtctggggatccacagagtaccaggtcctctgcctctgccttcctca
gggtagcctcctctgcatccctgggcttatgtctcccatcctgaatgtgc
agtcagaactgttccatcacttggtgttacacccgtgaactccctcaacc
cataggcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_123358170_123358674
seq2: B6Ng01-172I18.b_35_539 (reverse)

seq1  CAACCACACTGTGGCTCACAACAACAGCAATAGGATCTGGTGCCCTCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACACTGTGGCTCACAACAACAGCAATAGGATCTGGTGCCCTCTTC  50

seq1  TGGTGTATCTGCAGTAAGCTACAGTGTACTTATGTGTAATAATAAATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTATCTGCAGTAAGCTACAGTGTACTTATGTGTAATAATAAATTTT  100

seq1  TGGGCCTGAGCTAGTGGGACCAGAGTGAGCAGAGGTTCTAAAATTCAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTGAGCTAGTGGGACCAGAGTGAGCAGAGGTTCTAAAATTCAATT  150

seq1  TCCAACAACCATATGAAGGTTCACAACCATCTGTACAGCTAAAGTATACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAACCATATGAAGGTTCACAACCATCTGTACAGCTAAAGTATACT  200

seq1  CACATACATAAATAAATAAATCTTTTTAAAAAAAAAAAGTGTACAACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACATAAATAAATAAATCTTTTTAAAAAAAAAAAGTGTACAACATA  250

seq1  CCACCACACTGGGTATGTATGCATGTGTGTATTTTTAAATCTTTTGAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACACTGGGTATGTATGCATGTGTGTATTTTTAAATCTTTTGAAGC  300

seq1  CGGGCGTGGTAGCGCACACCTTTAATCCCAGCACTTGGGAGACAGAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCGTGGTAGCGCACACCTTTAATCCCAGCACTTGGGAGACAGAGGCA  350

seq1  GGCCAATTTTTGAGTTTTCAGAGAAACCTTGTAGGGGTGGGGGAGAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAATTTTTGAGTTTTCAGAGAAACCTTGTAGGGGTGGGGGAGAGACA  400

seq1  AAAAAAAACCCACTATGGTAAAAGAAAGCCAAGTGTCTGTTGACAAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACCCACTATGGTAAAAGAAAGCCAAGTGTCTGTTGACAAACAG  450

seq1  CTAAGCGAAATGTGGTATATATAAAACTGGGTTATATATACACACAGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCGAAATGTGGTATATATAAAACTGGGTTATATATACACACAGTGG  500

seq1  AATTC  505
      |||||
seq2  AATTC  505

seq1: chr5_123169578_123170686
seq2: B6Ng01-172I18.g_60_1169

seq1  GAATTCACTCTGTAGGCCAGGCTGGCTTCAAATTCAGAGCTATGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGGCCAGGCTGGCTTCAAATTCAGAGCTATGCCTGCC  50

seq1  TCTGCCTCCCGAGTGCTGGGACTAAAGATGCGTGTGACCACCATCCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCGAGTGCTGGGACTAAAGATGCGTGTGACCACCATCCTGCT  100

seq1  GGTCTTGTATCTTTTTTAAAGATCCTCAATATGTACTCCGGGATGGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGTATCTTTTTTAAAGATCCTCAATATGTACTCCGGGATGGCTTT  150

seq1  GAATTTTTTTGATATTTTTTAAATTACATTTGTATGTGTATAATTATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTTTGATATTTTTTAAATTACATTTGTATGTGTATAATTATGAA  200

seq1  GTTTGGAAAATAACTTGCGAGTCAGCCCCCTCCGTCTACCATTTTGGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAAAATAACTTGCGAGTCAGCCCCCTCCGTCTACCATTTTGGACC  250

seq1  AGGAATGGAATTCAAATCCTTTGGCATCGCAGCAAGTTATTTACCCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGGAATTCAAATCCTTTGGCATCGCAGCAAGTTATTTACCCACTG  300

seq1  AGTCACAGCAGCAGCCAAGCCCAAACTCTTTTTTTTTTTTTTAATTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAGCAGCAGCCAAGCCCAAACTCTTTTTTTTTTTTTTAATTTTAA  350

seq1  ATTTATTTTTTTACACTCTATATTTTATCCACCCGCCCCCATCCATCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTTTTACACTCTATATTTTATCCACCCGCCCCCATCCATCCTC  400

seq1  CGACTGTTCCATATCCCATATCTCCTCCTCACTCCCCTGTCTCCATGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTGTTCCATATCCCATATCTCCTCCTCACTCCCCTGTCTCCATGTGG  450

seq1  ATGTCCCCACCCCCTACCCCACCTGACCTCTAAACTCCCTGGGGCCTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCCACCCCCTACCCCACCTGACCTCTAAACTCCCTGGGGCCTCCA  500

seq1  GTCTCTTGAGGGTTAGGTGCATCATCTCTGAATGAACATAGACCCAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTGAGGGTTAGGTGCATCATCTCTGAATGAACATAGACCCAGCAG  550

seq1  TCCTCTGCTGCATATGTATTAGTGGCCTCATATCAGCTGAAATATGCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGCTGCATATGTATTAGTGGCCTCATATCAGCTGAAATATGCTAC  600

seq1  CTGCTTGGTGGACCAGTGTTCGAGAGATCTCAGGGGTCCAGATTTATTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGGTGGACCAGTGTTCGAGAGATCTCAGGGGTCCAGATTTATTGA  650

seq1  GACTGCTGGTCCTCCTACAGGGTCGCCCTTCTCCTCAGCCTCTTTCAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTGGTCCTCCTACAGGGTCGCCCTTCTCCTCAGCCTCTTTCAGCC  700

seq1  TTTCCCTAGTTCACCCCACAGGGGTCATCTGCTTCTGTCCATTTCCTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTAGTTCACCCCACAGGGGTCATCTGCTTCTGTCCATTTCCTGCC  750

seq1  TCAGCTTTCCAAGTATTGGGAACACTGGCATAAGCTATCATAACCTGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCAGCTTTCCAAGTATTGGGAACACTGGCATAAGCTATCATAACCTGGC-  799

seq1  TTGGGTGTCTCAAGCACCATGCCCACATAACCCCCAACCCCAACACACAC  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTGGGTGTCTCAAGCACCATGCCCACATAACCCCCAA-CCCAACACACAC  848

seq1  ACACACACACACACACACACACACACAGACACACACACACACACACACAC  900
      |||||||||||||||||||||||||| |||||||| |||||||||||| |
seq2  ACACACACACACACACACACACACACGGACACACATACACACACACACGC  898

seq1  ACACACACACACACACACACACACAATCAGCACAGAAAAGACTGAGCCAG  950
      || ||||||| ||| ||||||| || ||||||||||||||||||||||||
seq2  ACTCACACACTCACGCACACACGCATTCAGCACAGAAAAGACTGAGCCAG  948

seq1  GCTAGGTCTGGGGAT-CACAGAGTACCAGGTTCCTCTTGCCTCTGCCTTC  999
      ||||||||||||||| |||||||||||||| ||||| |||||||||||||
seq2  GCTAGGTCTGGGGATCCACAGAGTACCAGG-TCCTC-TGCCTCTGCCTTC  996

seq1  CTCAGGGTAGCCTCCTCTGCATCCCTGGGCTTATGTCTCCCATCCTGGAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTCAGGGTAGCCTCCTCTGCATCCCTGGGCTTATGTCTCCCATCCTGAAT  1046

seq1  GTGCAGTCCAGACCTG-TCCATCACT--GTGT--CACCCGTGAAACTCCT  1094
      ||||||| |||| ||| |||||||||  ||||  ||||||||||   |||
seq2  GTGCAGT-CAGAACTGTTCCATCACTTGGTGTTACACCCGTGAACTCCCT  1095

seq1  CAACCCATAAGCATG  1109
      ||||||||| |||||
seq2  CAACCCATAGGCATG  1110