BAC Information

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BAC

Clone NameB6Ng01-172K16
Chromosome5 (Build37)
Map Location 80,719,315 - 80,870,138
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384, Lphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172K16.bB6Ng01-172K16.g
ACCGA001223GA001224
length1,136992
definitionB6Ng01-172K16.b B6Ng01-172K16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,868,950 - 80,870,138)(80,719,315 - 80,720,076)
sequence
gaattcttcaatctgaagttatttaaactcacaaatgtttattattaaaa
tataaatgaccatataagataatttgtttcaagatgcataagttatccct
tggcctaatgctccaccgcacacacactcatttaaaaagcattataggaa
cacatgaacgtttactgtgacatacttgagttgcttcctaaggtgagatt
tatcacactacagttgtggtttcagtatgctccttggcattcaaagtaac
aaatctgttagcagagcatagactctactctgaattggtgtgcataatag
attttgtaacttgtgggatacccacctacattgccagcttaatttctaaa
atgcaaaagagagtattgatatatataatgttcaaagttactactataac
ctcaggccaatgaattttataggtggagagtggcaaatattgttctattt
ttaatatgtttttcttctaggctgtgcatgagcttcatcagcgctctcgt
tttctgtgttaagggacaagccagcagggaggttataaatttatatcagt
agatccagcaagagctggactgaatcagtttactgcttactcccagtgcc
acagttaacaaggcaattcaccttcagacactcggttttattatctggta
aatggaaattactattccccccgataccaacagtgggtgaaataactttt
gtgggcacattacaaactggctgccacatcatctggtcaataattattgg
gctaattgtaattttactatagaaagatagatagaaactctgacctgaaa
caccacagtttataaaagcttattgggaagtggctaaaacaaatttctga
gatgacaggtttgtttaccttctttcagtctttaaatcttttgaaatgtt
gcccgtgattaaaaatcagattaatttaattatcttatgtcaccaacatt
ttcaacagtatttatcattcatcacttttaaaaatttttttttggtgaaa
tagtatatatttaccaaataactgcagcaaagaacagtggtgagttctta
tgacttttgtgtgaattcttaaaaatcttaaagtcttgatactgacagta
tcttggaaactggctgaagcatcatagaatgaacca

gaattcactttcaatgatataaaagggtgcacctgaggactcctgaagaa
catagtctcaaaagggtttgcaagatttccactgagcatacaaccccata
caaacctataaagaaacacatagatttaaaagaaatgtattcctggttga
aagaaacaattttcacggcatcatgataaagtcacaaagcagagtccatt
gtgtaacactgcacattcattttctttgttacagataactctgttgtcat
catcttttattaaatttttattggttattttgtttatttacacgtcaatg
ttatccctctaccagttccctccctccccaaaaccctccactccacctcc
ctccctctgcccctgtgaggaggctccccttcccactcccatctcacggc
cctcctacactggggaatcaagctttcacagaactcagggcttccactcc
cattgatgccagataaggccatcttctgctacatatacaactggagacat
gggtccctccaaatatattctttggttgctggtttagttcctaggagctc
tggaaggtctggttggttgatattgtggttgttcccatggggttgcaaac
cccttcagctctttcagtccttcccctaattcctccattggggttcctgt
gctcagtccggtgtttgggtgcaagcatccacatctttatccataaggct
ctgacagagcctctcaggagatatctacatcaggttcctctcagcaagta
cttccagggatctgaaagtgtctggatttggtggctacacattggatgga
cccccaggtgggacagtccctggatggccccttcctccctgtattttttt
tagataggaacaagtcttgtttaaaattttgtgaagggtggttgggccca
tccctcaaccagggacaatacctaacctctgcatatggtctctccaaggg
ttttcccccacccccttgttgggtattttcagctaatatcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_80868950_80870138
seq2: B6Ng01-172K16.b_47_1182 (reverse)

seq1  TGGTTCATTCTGATGAAGTTCCTCCTACATTGTTACATATGGGTCCATCC  50
                                               ||| ||| |
seq2  ----------------------------------------TGGTTCATTC  10

seq1  TATGGATGGCTTCCAGCCAGTGTTCCCAAGATACTGTTCAGTTATTCAGA  100
      ||| ||| |||| ||||||  ||| ||||||||||| |||| |||  |||
seq2  TAT-GAT-GCTT-CAGCCA--GTTTCCAAGATACTG-TCAG-TATCAAGA  53

seq1  CTTTAAGATTTTTTTTAAAGATTTCCACCACAAAGTCATAAGAACTTCAC  150
      |||||||||||||    |||| || |||   |||||||||||||| ||||
seq2  CTTTAAGATTTTT----AAGAATT-CACACAAAAGTCATAAGAAC-TCAC  97

seq1  CACTGTCTTTTGCTGCAGTTATTTGGTAAATATTATACTATTTCACCAAA  200
      ||||||  |||||||||||||||||||||||| |||||||||||||||||
seq2  CACTGTTCTTTGCTGCAGTTATTTGGTAAATA-TATACTATTTCACCAAA  146

seq1  AAAAATTTTTAAAAAGTGATGAATGATAAATACTGTTGAAAATGTTGGTG  250
      ||||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTTTTAAAAGTGATGAATGATAAATACTGTTGAAAATGTTGGTG  196

seq1  ACATAAGATAATT-AATTAATCTGATTTTTAATCACGGGCAACATTTCAA  299
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACATAAGATAATTAAATTAATCTGATTTTTAATCACGGGCAACATTTCAA  246

seq1  AAGATTTAAAGACTGAAAGAAGGTAAACAAACCTGTCATCTCAGAAATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTAAAGACTGAAAGAAGGTAAACAAACCTGTCATCTCAGAAATTT  296

seq1  GTTTTAGCCACTTCCCAATAAGCTTTTATAAACTGTGGTGTTTCAGGTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGCCACTTCCCAATAAGCTTTTATAAACTGTGGTGTTTCAGGTCA  346

seq1  GAGTTTCTATCTATCTTTCTATAGTAAAATTACAATTAGCCCAATAATTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCTATCTATCTTTCTATAGTAAAATTACAATTAGCCCAATAATTA  396

seq1  TTGACCAGATGATGTGGCAGCCAGTTTGTAATGTGCCCACAAAAGTTATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCAGATGATGTGGCAGCCAGTTTGTAATGTGCCCACAAAAGTTATT  446

seq1  TCACCCACTGTTGGTATCGGGGGGAATAGTAATTTCCATTTACCAGATAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCACTGTTGGTATCGGGGGGAATAGTAATTTCCATTTACCAGATAA  496

seq1  TAAAACCGAGTGTCTGAAGGTGAATTGCCTTGTTAACTGTGGCACTGGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCGAGTGTCTGAAGGTGAATTGCCTTGTTAACTGTGGCACTGGGA  546

seq1  GTAAGCAGTAAACTGATTCAGTCCAGCTCTTGCTGGATCTACTGATATAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCAGTAAACTGATTCAGTCCAGCTCTTGCTGGATCTACTGATATAA  596

seq1  ATTTATAACCTCCCTGCTGGCTTGTCCCTTAACACAGAAAACGAGAGCGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAACCTCCCTGCTGGCTTGTCCCTTAACACAGAAAACGAGAGCGC  646

seq1  TGATGAAGCTCATGCACAGCCTAGAAGAAAAACATATTAAAAATAGAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAGCTCATGCACAGCCTAGAAGAAAAACATATTAAAAATAGAACA  696

seq1  ATATTTGCCACTCTCCACCTATAAAATTCATTGGCCTGAGGTTATAGTAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGCCACTCTCCACCTATAAAATTCATTGGCCTGAGGTTATAGTAG  746

seq1  TAACTTTGAACATTATATATATCAATACTCTCTTTTGCATTTTAGAAATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTGAACATTATATATATCAATACTCTCTTTTGCATTTTAGAAATT  796

seq1  AAGCTGGCAATGTAGGTGGGTATCCCACAAGTTACAAAATCTATTATGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGCAATGTAGGTGGGTATCCCACAAGTTACAAAATCTATTATGCA  846

seq1  CACCAATTCAGAGTAGAGTCTATGCTCTGCTAACAGATTTGTTACTTTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATTCAGAGTAGAGTCTATGCTCTGCTAACAGATTTGTTACTTTGA  896

seq1  ATGCCAAGGAGCATACTGAAACCACAACTGTAGTGTGATAAATCTCACCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAGGAGCATACTGAAACCACAACTGTAGTGTGATAAATCTCACCT  946

seq1  TAGGAAGCAACTCAAGTATGTCACAGTAAACGTTCATGTGTTCCTATAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGCAACTCAAGTATGTCACAGTAAACGTTCATGTGTTCCTATAAT  996

seq1  GCTTTTTAAATGAGTGTGTGTGCGGTGGAGCATTAGGCCAAGGGATAACT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTAAATGAGTGTGTGTGCGGTGGAGCATTAGGCCAAGGGATAACT  1046

seq1  TATGCATCTTGAAACAAATTATCTTATATGGTCATTTATATTTTAATAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATCTTGAAACAAATTATCTTATATGGTCATTTATATTTTAATAAT  1096

seq1  AAACATTTGTGAGTTTAAATAACTTCAGATTGAAGAATTC  1189
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTGTGAGTTTAAATAACTTCAGATTGAAGAATTC  1136


seq1: chr5_80719315_80720076
seq2: B6Ng01-172K16.g_61_822

seq1  GAATTCACTTTCAATGATATAAAAGGGTGCACCTGAGGACTCCTGAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTCAATGATATAAAAGGGTGCACCTGAGGACTCCTGAAGAA  50

seq1  CATAGTCTCAAAAGGGTTTGCAAGATTTCCACTGAGCATACAACCCCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCTCAAAAGGGTTTGCAAGATTTCCACTGAGCATACAACCCCATA  100

seq1  CAAACCTATAAAGAAACACATAGATTTAAAAGAAATGTATTCCTGGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTATAAAGAAACACATAGATTTAAAAGAAATGTATTCCTGGTTGA  150

seq1  AAGAAACAATTTTCACGGCATCATGATAAAGTCACAAAGCAGAGTCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAATTTTCACGGCATCATGATAAAGTCACAAAGCAGAGTCCATT  200

seq1  GTGTAACACTGCACATTCATTTTCTTTGTTACAGATAACTCTGTTGTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAACACTGCACATTCATTTTCTTTGTTACAGATAACTCTGTTGTCAT  250

seq1  CATCTTTTATTAAATTTTTATTGGTTATTTTGTTTATTTACACGTCAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTATTAAATTTTTATTGGTTATTTTGTTTATTTACACGTCAATG  300

seq1  TTATCCCTCTACCAGTTCCCTCCCTCCCCAAAACCCTCCACTCCACCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCTCTACCAGTTCCCTCCCTCCCCAAAACCCTCCACTCCACCTCC  350

seq1  CTCCCTCTGCCCCTGTGAGGAGGCTCCCCTTCCCACTCCCATCTCACGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTGCCCCTGTGAGGAGGCTCCCCTTCCCACTCCCATCTCACGGC  400

seq1  CCTCCTACACTGGGGAATCAAGCTTTCACAGAACTCAGGGCTTCCACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTACACTGGGGAATCAAGCTTTCACAGAACTCAGGGCTTCCACTCC  450

seq1  CATTGATGCCAGATAAGGCCATCTTCTGCTACATATACAACTGGAGACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATGCCAGATAAGGCCATCTTCTGCTACATATACAACTGGAGACAT  500

seq1  GGGTCCCTCCAAATATATTCTTTGGTTGCTGGTTTAGTTCCTAGGAGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCCTCCAAATATATTCTTTGGTTGCTGGTTTAGTTCCTAGGAGCTC  550

seq1  TGGAAGGTCTGGTTGGTTGATATTGTGGTTGTTCCCATGGGGTTGCAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGTCTGGTTGGTTGATATTGTGGTTGTTCCCATGGGGTTGCAAAC  600

seq1  CCCTTCAGCTCTTTCAGTCCTTCCCCTAATTCCTCCATTGGGGTTCCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCAGCTCTTTCAGTCCTTCCCCTAATTCCTCCATTGGGGTTCCTGT  650

seq1  GCTCAGTCCGGTGTTTGGGTGCAAGCATCCACATCTTTATCCATAAGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTCCGGTGTTTGGGTGCAAGCATCCACATCTTTATCCATAAGGCT  700

seq1  CTGACAGAGCCTCTCAGGAGATATCTACATCAGGTTCCTCTCAGCAAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGAGCCTCTCAGGAGATATCTACATCAGGTTCCTCTCAGCAAGTA  750

seq1  CTTCCAGGGATC  762
      ||||||||||||
seq2  CTTCCAGGGATC  762


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