BAC Information

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BAC

Clone NameB6Ng01-172K21
Chromosome5 (Build37)
Map Location 68,734,286 - 68,735,428
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc30a9, EG666938, C330024D21Rik, D830007B15Rik, Atp8a1, LOC100042458, EG330097, EG666977, AY616753
Downstream geneLOC666996, Kctd8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172K21.bB6Ng01-172K21.g
ACCGA001232GA001233
length1,1471,165
definitionB6Ng01-172K21.b B6Ng01-172K21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgttctgctgagaaaagacttagatggcagacatcctgtctgta
ctggtcagatggggccttgtctatgatttgcaagttgttgctactgccaa
gaaggaagtttgggctcttgtatcatgagattattgcacctgttgttcca
ggaatccacgagacccagagaggagagtaacacatcacgctggaggtaga
tgggaagtggaagcagccttgcaaagctccctccaagctgatcagagcac
tggcttttgacaaaagcagcccccatgtcctgcttcagttttagtgcatg
tctttaatacagtgtacctgcatgttacatacatcctgtgtaatattagt
gctctgcaacactgagctcagatctatccctcccatcatccatgatacga
tcacgttttagctttacatgtgttgtcagtccatgcattttaaacactat
ttttgtgtcaggcatttgtctttcagtgtgagtaacagtaagaggaaaga
cctcaggtgtgatgctatgcacttgaatctcagcactcaggacactgagg
aaggagggtcctgagtctgaggccagcttgggctacctagtgaggcatgt
ttaaaaacaaggcatgagactggggggatggctcagtggttaagagcact
agctgctcttccaaaggacccaggttagtgtctacatggcagctcacagc
tgtttagaattccaattctagggataccaggcatgcaggcaaaacaccaa
aatacataaatattattttaaatttaaaaaagaaaaatatgtttattttc
atgttatgtcctttatttctttatgagacttatgtttttactggttttat
tccttctgatgtaagtattttaataacatttctattaaaatatatcttct
gatagaaaaaaaaagatagccttagataagtgtttaggaacacagttggg
gctagaacttgtttggggtttttagtgtacctcttcaagatgtctcagaa
gcagaaacccacacacattttttgaaaaacagaaagtaagtcaatattat
cctcctgtaaataattgaaatttcaataattttcttgatagagtttttat
tatagctacatattttggggagaattgaaggcgccacgtgagtttgg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggagatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaagatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctggccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taagatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtgaacactatgcccctccttagaagtgggag
caaaacacccttggaaggagttacagagacaaagtttggagctgagataa
aaggatggaccatgtagacactaccatatccggggatccatcccataatc
agcttccaaatgctgacaccattgcatacactagcaagattatgctgaaa
ggaccctgatatagctgtctcttgtcagagtatgcttgggcctagcaagc
atagaagtggatgctcacagtcggctattggatgggatcacatgggcccc
caatgaaggagctagagaagtaccaaagagctaaaggatctgcacactat
agtggacacattatgactaacagtacccggagctctgactctagctgcat
atgcatcaaagattgctagtcgtcatcactgaaagagaggtccatggact
cgaaacttattgccagtacaggacgtcaagtcataagacggcgactgcgt
gcgtgcgctgatcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_68734286_68735428
seq2: B6Ng01-172K21.b_44_1190

seq1  GAATTCTGTTCTGCTGAGAAAAGACTTAGATGGCAGACATCCTGTCTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTCTGCTGAGAAAAGACTTAGATGGCAGACATCCTGTCTGTA  50

seq1  CTGGTCAGATGGGGCCTTGTCTATGATTTGCAAGTTGTTGCTACTGCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCAGATGGGGCCTTGTCTATGATTTGCAAGTTGTTGCTACTGCCAA  100

seq1  GAAGGAAGTTTGGGCTCTTGTATCATGAGATTATTGCACCTGTTGTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGTTTGGGCTCTTGTATCATGAGATTATTGCACCTGTTGTTCCA  150

seq1  GGAATCCACGAGACCCAGAGAGGAGAGTAACACATCACGCTGGAGGTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCACGAGACCCAGAGAGGAGAGTAACACATCACGCTGGAGGTAGA  200

seq1  TGGGAAGTGGAAGCAGCCTTGCAAAGCTCCCTCCAAGCTGATCAGAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGTGGAAGCAGCCTTGCAAAGCTCCCTCCAAGCTGATCAGAGCAC  250

seq1  TGGCTTTTGACAAAAGCAGCCCCCATGTCCTGCTTCAGTTTTAGTGCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTGACAAAAGCAGCCCCCATGTCCTGCTTCAGTTTTAGTGCATG  300

seq1  TCTTTAATACAGTGTACCTGCATGTTACATACATCCTGTGTAATATTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATACAGTGTACCTGCATGTTACATACATCCTGTGTAATATTAGT  350

seq1  GCTCTGCAACACTGAGCTCAGATCTATCCCTCCCATCATCCATGATACGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCAACACTGAGCTCAGATCTATCCCTCCCATCATCCATGATACGA  400

seq1  TCACGTTTTAGCTTTACATGTGTTGTCAGTCCATGCATTTTAAACACTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTTTTAGCTTTACATGTGTTGTCAGTCCATGCATTTTAAACACTAT  450

seq1  TTTTGTGTCAGGCATTTGTCTTTCAGTGTGAGTAACAGTAAGAGGAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTCAGGCATTTGTCTTTCAGTGTGAGTAACAGTAAGAGGAAAGA  500

seq1  CCTCAGGTGTGATGCTATGCACTTGAATCTCAGCACTCAGGACACTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGTGTGATGCTATGCACTTGAATCTCAGCACTCAGGACACTGAGG  550

seq1  AAGGAGGGTCCTGAGTCTGAGGCCAGCTTGGGCTACCTAGTGAGGCATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGGTCCTGAGTCTGAGGCCAGCTTGGGCTACCTAGTGAGGCATGT  600

seq1  TTAAAAACAAGGCATGAGACTGGGGGGATGGCTCAGTGGTTAAGAGCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACAAGGCATGAGACTGGGGGGATGGCTCAGTGGTTAAGAGCACT  650

seq1  AGCTGCTCTTCCAAAGGACCCAGGTTAGTGTCTACATGGCAGCTCACAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTCTTCCAAAGGACCCAGGTTAGTGTCTACATGGCAGCTCACAGC  700

seq1  TGTTTAGAATTCCAATTCTAGGGATACCAGGCATGCAGGCAAAACACCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGAATTCCAATTCTAGGGATACCAGGCATGCAGGCAAAACACCAA  750

seq1  AATACATAAATATTATTTTAAATTTAAAAAAGAAAAATATGTTTATTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATAAATATTATTTTAAATTTAAAAAAGAAAAATATGTTTATTTTC  800

seq1  ATGTTATGTCCTTTATTTCTTTATGAGACTTATGTTTTTACTGGTTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATGTCCTTTATTTCTTTATGAGACTTATGTTTTTACTGGTTTTAT  850

seq1  TCCTTCTGATGTAAGTATTTTAATAACATTTCTATTAAAATATATCTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGATGTAAGTATTTTAATAACATTTCTATTAAAATATATCTTCT  900

seq1  GATAGAAAAAAAAAGATAGCCTTAGATAAGTGTTTAGGAACACAGTTGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAAAAAAAAGATAGCCTTAGATAAGTGTTTAGGAACACAGTTGGG  950

seq1  GCTAGAACTTGTTTGGGGTTTTTAGTGTACCTCTTCAAGATGTCTCAGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCTAGAACTTGTTTGGGGTTTTTAGTGTACCTCTTCAAGATGTCTCA-GA  999

seq1  AGCAGGAAACCCACACACATTTTT--GAAAACAGAAAGTAAGTCAATA-T  1047
      |||| |||||||||||||||||||   ||||||||||||||||||||| |
seq2  AGCA-GAAACCCACACACATTTTTTGAAAAACAGAAAGTAAGTCAATATT  1048

seq1  ATCCTCCTGTTAAAATAATTG-AATTTCCATAATTTCTTTGATAGAGTAT  1096
      ||||||||||  ||||||||| |||||| |||||||  |||||||||| |
seq2  ATCCTCCTGT--AAATAATTGAAATTTCAATAATTTTCTTGATAGAGTTT  1096

seq1  TTA-TATAGCTACATA-TTTGGGGAGATATGAAGGCGC--AGTGAGTTTG  1142
      ||| |||||||||||| ||||||||||  |||||||||   |||||||||
seq2  TTATTATAGCTACATATTTTGGGGAGAATTGAAGGCGCCACGTGAGTTTG  1146

seq1  G  1143
      |
seq2  G  1147