BAC Information

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BAC

Clone NameB6Ng01-173A16
Chromosome5 (Build37)X (Build37)
Map Location 15,195,397 - 15,196,25787,254,229 - 87,256,622
singlet/doubletsingletsinglet
Overlap geneSpeer7-ps1
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173A16.bB6Ng01-173A16.g
ACCGA001497GA001498
length867739
definitionB6Ng01-173A16.b B6Ng01-173A16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,195,397 - 15,196,257)(87,254,229 - 87,256,622)
sequence
gaattctttctgctcatcacaagccgtcactaacagaatgtgggtggtga
gaactagtgcttatttgctgattaagaagtaagaacatacgtacatcagg
gaccacattttgaatgtgttttgtggtacagcctaggttttgggtgttta
tgaacagtatacttgaggaaaccttggaattgacagatttatatgctcta
cattaaaatataacttttacattggctacatttacatgacgatgaataaa
ccccaatgattgcttactgcgttataacactgttgttagtgttaacccac
gtgactgtcaggatgtacacagagatggtcgtaacttagcaacttatctt
cagctatttttatagactgttaagacaacagccatgatagtattatatta
ggactgtcatgcttttaaatgttaaaaaatgcttgtatgtataaaatata
aaattgcaaaagagcagtaactcattgagattgttatagattaaacttta
ttcatttaaaaggtaaactttaattttgttaaggaatttaaacaacaaga
acccaataaaaagaaataatatactatctttttatacaaaacttgtaatt
taaagcatgttattttgtaaattttactaagctcagatcaatattttaag
aaatatttagttaaactagatggtaaagccctattgctgaagacaacacc
tacatactggagaagtcatgctggtgtctaactagagctttcacccctgc
tgactggtgatcatgatctgtaaggtactctgctttgctaccagagcaga
aaggcaaacaacaacccagctacaaaccattcattctacagtgatgacca
gccctgcgagatatgct
gaattctgcactaaacccatctagtactgggctttgtttgtttgggagac
ttttaatgactgcttctatttctttggcagttatgggagtgttagactgt
ttatctgatcctggttacattttggtacatagtgtctgtctagaaaattg
tccatttcatccaatttttcagtattgttgagtatagtcttttgtaatag
gaaattatgatttttgaatattctgttcattctgttgttatttttccctt
ttcaattctgattttgttaaattggatactgtctctttgcccactggtta
gtctggctaagggtttatctattttgttgcttcctcaaagaaccagctcc
cggttttattgattctttgtatagttcttttgtttctacttgtttgattt
cagctctgtatttgattatttcctgacatctactcctctcgggtgaatgt
tgggaacaaaataaaagaagggggtgtcttggactggggcctggggagaa
gtaggctaagaaataaatgcccacaccccgccagagtttccctattctct
ggtcagtcaggcatgggagggctgctatctaccctatccactcatccctg
ggtgggcattcctctatcccactcttcagggggtggtcaaggggtagccc
ctgcctgggaaccccgggaacccccccagctactttgcttaaagcccctc
agggttgtgggagagagggaagagggaagaatttcccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15195397_15196257
seq2: B6Ng01-173A16.b_56_919 (reverse)

seq1  AGCATATCACGCA-GGCTGGTCATCACTGTAGAATGAATGGTTTGTAGCT  49
      |||||||| |||| ||||||||||||||||||||||||||||||||||||
seq2  AGCATATCTCGCAGGGCTGGTCATCACTGTAGAATGAATGGTTTGTAGCT  50

seq1  GGGTTGATGTTTGCCTTTCTGCTCTGGTAGC-AAGCAGAGTACCTTACAG  98
      |||||| |||||||||||||||||||||||| ||||||||||||||||||
seq2  GGGTTGTTGTTTGCCTTTCTGCTCTGGTAGCAAAGCAGAGTACCTTACAG  100

seq1  ATCGTGATCACCAGTCAGCAGGGGTGAAAGCTCTAGTTAGACACCAGCAT  148
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGATCACCAGTCAGCAGGGGTGAAAGCTCTAGTTAGACACCAGCAT  150

seq1  GACTTCTCCAGTATGTAGGTGTTGTCTTCAGCGATAGGGCTTTACCATCT  198
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GACTTCTCCAGTATGTAGGTGTTGTCTTCAGCAATAGGGCTTTACCATCT  200

seq1  AGATTAACT-AATATTTCTTAAAATATTGATCTGAGCTTAGTAAAATTTA  247
      || |||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAACTAAATATTTCTTAAAATATTGATCTGAGCTTAGTAAAATTTA  250

seq1  CAAAATAACATGCTTTAAATTACAAGTTTTGTATAAAAAGATAGTATATT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAACATGCTTTAAATTACAAGTTTTGTATAAAAAGATAGTATATT  300

seq1  ATTTCTTTTTATTGGGTTCTTGTTGTTTAAATTCCTTAACAAAATTAAAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTTTATTGGGTTCTTGTTGTTTAAATTCCTTAACAAAATTAAAG  350

seq1  TTTACTTTTTAAATGAATAAAGTTTAATCTATAACAATCTCAATGAGTTA  397
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTTTTAAATGAATAAAGTTTAATCTATAACAATCTCAATGAGTTA  400

seq1  CTGCTCTTTTGCAATTTTATATTTTATACATACAAGCATTTTTTAACATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTTTGCAATTTTATATTTTATACATACAAGCATTTTTTAACATT  450

seq1  TAAAAGCATGACAGTCCTAATATAATACTATCATGGCTGTTGTCTTAACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCATGACAGTCCTAATATAATACTATCATGGCTGTTGTCTTAACA  500

seq1  GTCTATAAAAATAGCTGAAGATAAGTTGCTAAGTTACGACCATCTCTGTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATAAAAATAGCTGAAGATAAGTTGCTAAGTTACGACCATCTCTGTG  550

seq1  TACATCCTGACAGTCACGTGGGTTAACACTAACAACAGTATTATAACGCA  597
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TACATCCTGACAGTCACGTGGGTTAACACTAACAACAGTGTTATAACGCA  600

seq1  GTAAGCAATCATTGGGGTTTATTCATCGTCATGTAAATGTAACAAATATA  647
      ||||||||||||||||||||||||||||||||||||||||| | ||| ||
seq2  GTAAGCAATCATTGGGGTTTATTCATCGTCATGTAAATGTAGCCAATGTA  650

seq1  AAAGTTATATTTTAATGTAGAGCATATAAAGCTGTCAATTCCAAGGTTTC  697
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAGTTATATTTTAATGTAGAGCATATAAATCTGTCAATTCCAAGGTTTC  700

seq1  CTCAAGTATACTGTTCATAAACACCCAAAACCTAGGCTGTACCACAAAAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTATACTGTTCATAAACACCCAAAACCTAGGCTGTACCACAAAAC  750

seq1  ACATTCAAAATGTGGTCCCTGATGTATGTATGTTCTTACTTCTTCATCAA  797
      |||||||||||||||||||||||||| ||||||||||||||||| |||| 
seq2  ACATTCAAAATGTGGTCCCTGATGTACGTATGTTCTTACTTCTTAATCAG  800

seq1  CAAATAAGCACTAGTTCTCACCACCCACATTCTGTTAGTGACGGCTTGTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAGCACTAGTTCTCACCACCCACATTCTGTTAGTGACGGCTTGTG  850

seq1  ATGAGCAGAAAGAA  861
      ||||||||||||||
seq2  ATGAGCAGAAAGAA  864

seq1: chrX_87254229_87256622
seq2: B6Ng01-173A16.g_515_806

seq1  TGTTGGGAACAAAATAAAAGGGGGGGGGGCTGGCGCCCTGGGGCCCTGGG  50
      ||||||||||||||||||||  ||||| | |   |  ||||||||  |||
seq2  TGTTGGGAACAAAATAAAAGAAGGGGGTG-TCTTGGACTGGGGCCTGGGG  49

seq1  -GAAGAACAGAAGGAAAATGATGCCCACACCCCGCCAGAGTTTCCCTATT  99
       |||| |    | ||||   ||||||||||||||||||||||||||||||
seq2  AGAAGTAGGCTAAGAAATAAATGCCCACACCCCGCCAGAGTTTCCCTATT  99

seq1  CTCTGGTCAGTCAGGCATGGGAGGGCTGCTATCTACCCTATCCACTCGTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTCTGGTCAGTCAGGCATGGGAGGGCTGCTATCTACCCTATCCACTCATC  149

seq1  CCTGGGTGGGCATTCCTCTATCCCACTCTTCAGGGGGTGTATAAGGGGCA  199
      |||||||||||||||||||||||||||||||||||||||   |||||| |
seq2  CCTGGGTGGGCATTCCTCTATCCCACTCTTCAGGGGGTGGTCAAGGGGTA  199

seq1  G-CTCTGCCTGGGACACCCC-----CACCCCGATCTACTTTGC-TAAAGC  242
      | | |||||||||| |||||     | |||| | ||||||||| ||||||
seq2  GCCCCTGCCTGGGA-ACCCCGGGAACCCCCCCAGCTACTTTGCTTAAAGC  248

seq1  TAC-CAGGGTTGTGGAAGAGAGGGAAGAG---AGAAGTTCCCAACAGACC  288
        | ||||||||||| |||||||||||||   |||| |||||||      
seq2  CCCTCAGGGTTGTGGGAGAGAGGGAAGAGGGAAGAATTTCCCAA------  292

seq1  AGAGTGCTCAGCGGAACTTGAAGGAGCAGAGCAGAGACTCTATGGTTTTA  338
                                                        
seq2  --------------------------------------------------  292

seq1  GACCTTTATTATAGAAATGCAGGGGAAAGAGAGAAGGTAGAAAGGAGGAA  388
                                                        
seq2  --------------------------------------------------  292

seq1  GAGAGAGAAAAAGAGAGAGAGAGAAGCGAGGAAAGAAGAAGACAAAGAGA  438
                                                        
seq2  --------------------------------------------------  292

seq1  AAGGGAAGAGGAGAGAGAATTGAGAAGAGAGAGGTGAGAAGACAAAGGGA  488
                                                        
seq2  --------------------------------------------------  292

seq1  TAGGAGAGCGAGGTGCTGGCTGAGCACCCCTTTTTATGGTCTTCACTGTT  538
                                                        
seq2  --------------------------------------------------  292

seq1  GCTAGGTAACTGGGGAGGAGTTTAGCCTGAAGGTCAGAAGCTTGGACCAT  588
                                                        
seq2  --------------------------------------------------  292

seq1  TGCTTATGCGACTACTGACTATGCTTCTCTTGGGGGCTGTGGGAGGTGAT  638
                                                        
seq2  --------------------------------------------------  292

seq1  ACCTTAGGCAGGGGCCAGAGTTCCAGGAGCATGAGGTAATGCCTACCTTG  688
                                                        
seq2  --------------------------------------------------  292

seq1  TCATGTAGGTGAATTATGACCATCGCGGTTCAGACCTCAGTTCGACTGGA  738
                                                        
seq2  --------------------------------------------------  292

seq1  GACCAGCCTGCAATTCCCCACAATTCCTCCTCATTTTTTATTAGAAAAAA  788
                                                        
seq2  --------------------------------------------------  292

seq1  TTGGGGGGCGGGGTCACTGATGTGACTGTGTCATTAATTGTGAAAATTTA  838
                                                        
seq2  --------------------------------------------------  292

seq1  GAGTGGATGGGAGTATCAGAAGAAAATATATAGTCTAGAGAAATAGAACA  888
                                                        
seq2  --------------------------------------------------  292

seq1  AGGCCAGAGTAGTAAGGAGAGTTAAGGGTAAGAGTTGAGAAGGCAAGAGA  938
                                                        
seq2  --------------------------------------------------  292

seq1  TTGAGTTGAGAAGGCAAAAGATTGTACAATCAGTCAGTTGTTTTATGGGT  988
                                                        
seq2  --------------------------------------------------  292

seq1  AGTACAATTTGAGGGGAAGAACATCCATTTTTGAACAGCAATTAATTAAT  1038
                                                        
seq2  --------------------------------------------------  292

seq1  CTAGATAGACATTATGCTTTCCTCACTATCATATAACTTTCCCCAAAGTT  1088
                                                        
seq2  --------------------------------------------------  292

seq1  CAACAGCCATTTGGCTTTTGCAAAAAGAGTCCATCTGTAGCTGGAAGGTC  1138
                                                        
seq2  --------------------------------------------------  292

seq1  CCAGGTCTGTCTTCTATAGGGTTCAGCACTTGGGGAGCCTTCAGTCAGAT  1188
                                                        
seq2  --------------------------------------------------  292

seq1  GAGATTTTTGGAGGAAGGCAGCTTTGTCTGTAGGTCCCTGTAGATGGTGC  1238
                                                        
seq2  --------------------------------------------------  292

seq1  TGTGGCAGCAAACCTCATGTGGAAATAGACCTGTAGAGTAATTATAACAA  1288
                                                        
seq2  --------------------------------------------------  292

seq1  AGGAGCAGAACACCAGCAGAGGGTATCTGCATAGTGTGGATAGCAAAAGT  1338
                                                        
seq2  --------------------------------------------------  292

seq1  TATGCCTGCAAGGGTTTGCTTAGGAGCACATCCCAGGCCCTTGTGGATGG  1388
                                                        
seq2  --------------------------------------------------  292

seq1  CTAAAGAAGAAAATATCATGTTACTTGTGTAACTGGAGTAGGCAGTTAAC  1438
                                                        
seq2  --------------------------------------------------  292

seq1  AGTTCTCCTGTAACAGAAAACCGGTTATTAATTAAGGATTGGACACCTTT  1488
                                                        
seq2  --------------------------------------------------  292

seq1  TCAACTTAAAGGAAATTTTAAACATATTGTAAGAATCTTTGGACATATAT  1538
                                                        
seq2  --------------------------------------------------  292

seq1  GATGAATACTAGAGAGAAAAAAAGAGCATTTAGAAAAAGAAGCAAGACAA  1588
                                                        
seq2  --------------------------------------------------  292

seq1  TTTTTTGGTTTAAAAGCACGATTCAGGTATTCCCTTAGGATAGCACAGCT  1638
                                                        
seq2  --------------------------------------------------  292

seq1  TCAATTCAGCTTTCATGGGCTTATCTGGATGGGGGGATGGGTATACTTCC  1688
                                                        
seq2  --------------------------------------------------  292

seq1  CCCTGTTTTGTTTTTATTTTAACTGGGGAGTAAAGGATTAAGTGGAAGGC  1738
                                                        
seq2  --------------------------------------------------  292

seq1  TTTTAGCAGGGTTTCAGCCCAGCTGCGGTGGGTCCCACCCACGCAGCTGT  1788
                                                        
seq2  --------------------------------------------------  292

seq1  CAATCACTGCCTAGCTGGGTCTTATCTGGAGAAAGGAAGGGCTACAGAAG  1838
                                                        
seq2  --------------------------------------------------  292

seq1  TTAGAAGACTAAGTTTCTTATAGTTAAACCTGTAACAAAGAATGGGAAGG  1888
                                                        
seq2  --------------------------------------------------  292

seq1  GGATGGCAGGCAGAGGTTAAAGCCAAGAGCTAGAGGGGAGGGGACAGAGC  1938
                                                        
seq2  --------------------------------------------------  292

seq1  TGACCAGGAACATTTGGAAAGACAGAGAGAAAAGTAGAAGGCCAAGTTTT  1988
                                                        
seq2  --------------------------------------------------  292

seq1  TTAACTCGATCACTCAAGGTCTCTGGAAACTTGGAGATCTCCTGTAGGTC  2038
                                                        
seq2  --------------------------------------------------  292

seq1  TCTGTGCAAAGCATTCTTCAGCTGGTTCTGTCTCATGAGGATGGTGTAAC  2088
                                                        
seq2  --------------------------------------------------  292

seq1  CATCCCTCTGCGACCAGTTGTTGGGAACAAAATAAAAAAGGGGGGAGAGG  2138
                                                        
seq2  --------------------------------------------------  292

seq1  GGCTTGGGCCGTGGTGAAAAACAGAAGGAAAAAGATGTCCGCACTCCGCC  2188
                                                        
seq2  --------------------------------------------------  292

seq1  AGTTTCCCTATTCTCTGGTCAGTCAGGTGTGGGAGGGCTGCTATCTACCC  2238
                                                        
seq2  --------------------------------------------------  292

seq1  TATCCACTCGTCCCTGGGTGGGCATTCCTCTATCCCACTCTTCAGGGGGT  2288
                                                        
seq2  --------------------------------------------------  292

seq1  GGACAAGGGGCAGCCCTGCCTGGGGACATTCCCCCCCCCCACCTTGAGCT  2338
                                                        
seq2  --------------------------------------------------  292

seq1  ACTTTGCTAAAGCCACCAGGGTTGTGGGAAAGAGGGAAGAGGCAAGAAGT  2388
                                                        
seq2  --------------------------------------------------  292

seq1  TCCCAA  2394
            
seq2  ------  292