BAC Information

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BAC

Clone NameB6Ng01-173C03
Chromosome5 (Build37)
Map Location 5,259,341 - 5,260,538
singlet/doubletsinglet
Overlap genePftk1
Upstream geneFzd1, LOC667678
Downstream gene1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173C03.bB6Ng01-173C03.g
ACCGA001565GA001566
length1,1911,200
definitionB6Ng01-173C03.b B6Ng01-173C03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaaagatgcccgggattgacctttgcacagcctttctgacagat
gacagcttctggagtctcttaggatgtctgttaaaaagtgaaatgcaaac
agtaggccttctaggctgggcagatggctatcccggttaggatagaacac
tgatttcagacctatcccatttgatttgcttttaggacttcttaaatggc
acacggtctcagtttttaaattgctgtagttcatgttagttagtctccct
ggccaggttgctttcccctaatgcataatggagggtcttttgaaaataca
ctgctattcccctttctcagacaagaccaaagacagagacaataataata
gtgataataataataatcataataaagagttgtgtttaaacctgtacatt
ctttgaaagagaaaaatgtcctttaggacagaaatagactttttcttgac
agctttaggggaacagtgtcttgatgaagaaactaattagctgtgcattg
agagccactttgcgtggcttaatttttcagttctgtggagagtgggcatt
ctgcttgcagcagtggggactcttttaggttggcagagtcttcactctgc
ggagcagcaggacagagacacccccttgccatgtgtagagtctcagcttt
acacaaactcctcctctggcccttctgactatagatatgtggtcagggag
aaagtacatctgtaaattctactgttttgcctcccaacagtggctatgca
tgtggtcatcttatgtgaacgcactctctctctctaaccatattatgatt
ggggatatcaagcaggagtcagagaatttgtataaactttctttgactct
ttgggattcttgctaaagttttcctgggaccactgttgtttgagaagtgt
ttgattcagccttccatggagtaggagtcagaacccatgtgctttttcag
tctggagaggattactccagtctgccatgtagacagagggctctctctga
tggtagggcttatgcaggtgtaccaatgcttgtgcacaccgatggcttga
atatttttaatttatagataacagtactactctttataactgcctactca
aagaataccaataatcttgataacgttagcaaagcacaaggtttggttcc
aattcccatggaaaacgggttaatggactgaataaaaaaat
gaattcttagctcctcctgcaccatgcctgcctggatgctgccatgctcc
cactttgatgataatggactgaacctctgaacctgtaagccagccccaag
taaatgttgttttttataagacttgccttggtcatggtgtctgttcacag
cagtaaaaccctaactaagacagaagttggtaccagggactgggatattg
ctgtgatgggcctgaccatgcttttatttgaaagaatgtggattttggga
ctttggatttggaaagtagtggaatgctttaaatggggcttaatgggtca
tcctagtaggaatatggaagactttgttgctgggagtgatttgaactgtg
ttgacctagcccaagagatttcaaaggagaagaatttcagaatgtggcat
aaagactatttttgtggtattttggtaaagaatgtggctactttttaccc
ttgtctgaaaagtctgcctgagactaaggtgaagagactcagatttatta
cattgacaaagaaagtttcaaaaaagtccagtagagactttattctctgg
ttgagtcttatgaagagaagtttgaacaagcatagcaaacttagaaagga
aaaatataaaacatatggttcgagtattaaaggggaaccaggaagtgaaa
tggaacaaaatcctgtgttctaggagataacagattaagggagtgggacc
ttggggcaagatcctaccgagctaaatttagatccagggatggtggtaca
cacctttaatcccagtagacaggcatgttgatctctgcgtttaaggtcaa
tctacacagcaagacccaggatagcccagcttaaggcagtgaggatttgg
aaaacagaaagccagtgacaatgtaatagtacaagtgggttatgttgtag
ttcctgcaagcagcagaacttcccagcttcagccgtgtggctctggctct
agagttaaggatgggaggaactctggatagtccatcttttttgtcttaga
atgcaaactttgtctctgtaactcctttcatggggtttttgttccctact
ctaggagaacaagtatccaacacattgggtccttccttctctgatttgtg
gtttgcaattgattcttggacttcttatgtttctgactatatccatacgt
ggagatgtaatgtcagattgagctttcttttgtgaatgagggctcacact

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_5259341_5260538
seq2: B6Ng01-173C03.b_41_1231 (reverse)

seq1  ATTTTTTTATTAATGTCATTAACACTTTTCTCATGAGAATTGAACCCAAA  50
      ||||||||||| |   ||||||| | |||  |||| |||||| | |||||
seq2  ATTTTTTTATTCAGTCCATTAACCCGTTTTCCATGGGAATTGGAACCAAA  50

seq1  AC-TGTGCTTTGCTAACG-TATCAAGGATTATTTGGTATCTTTGGAGTAA  98
       | ||||||||||||||| |||||| ||||| |||||||  || ||||| 
seq2  CCTTGTGCTTTGCTAACGTTATCAA-GATTA-TTGGTATTCTTTGAGTAG  98

seq1  GCAAGTTTATAAAGAAGTTAGTACTG-TATCTATAAA-TAAAAATATTCA  146
      |||   |||||||||   |||||||| |||||||||| ||||||||||||
seq2  GCA--GTTATAAAGA--GTAGTACTGTTATCTATAAATTAAAAATATTCA  144

seq1  AGCCATCGGTGTGCACAAAGCATTGGGTACCACCTGCAATAAGCCCTACC  196
      |||||||||||||||| ||||||| |||| ||||||| ||||||||||||
seq2  AGCCATCGGTGTGCAC-AAGCATT-GGTA-CACCTGC-ATAAGCCCTACC  190

seq1  ATCAGGAGAGAGCCCTCTGTCTACATGGCAGACTGGAGTAATCCTCTCCA  246
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCA-GAGAGAGCCCTCTGTCTACATGGCAGACTGGAGTAATCCTCTCCA  239

seq1  GACTGAAAAAGCACATGGGTTCTGACTCCTACTCCATGGAAGGCTGAATC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAAAAGCACATGGGTTCTGACTCCTACTCCATGGAAGGCTGAATC  289

seq1  AAACACTTCTCAAACAACAGTGGTCCCAGGAAAACTTTAGCAAGAATCCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTTCTCAAACAACAGTGGTCCCAGGAAAACTTTAGCAAGAATCCC  339

seq1  AAAGAGTCAAAGAAAGTTTATACAAATTCTCTGACTCCTGCTTGATATCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTCAAAGAAAGTTTATACAAATTCTCTGACTCCTGCTTGATATCC  389

seq1  CCAATCATAATATGGTTAGAGAGAGAGAGTGCGTTCACATAAGATGACCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCATAATATGGTTAGAGAGAGAGAGTGCGTTCACATAAGATGACCA  439

seq1  CATGCATAGCCACTGTTGGGAGGCAAAACAGTAGAATTTACAGATGTACT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATAGCCACTGTTGGGAGGCAAAACAGTAGAATTTACAGATGTACT  489

seq1  TTCTCCCTGACCACATATCTATAGTCAGAAGGGCCAGAGGAGGAGTTTGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCTGACCACATATCTATAGTCAGAAGGGCCAGAGGAGGAGTTTGT  539

seq1  GTAAAGCTGAGACTCTACACATGGCAAGGGGGTGTCTCTGTCCTGCTGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCTGAGACTCTACACATGGCAAGGGGGTGTCTCTGTCCTGCTGCT  589

seq1  CCGCAGAGTGAAGACTCTGCCAACCTAAAAGAGTCCCCACTGCTGCAAGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGAGTGAAGACTCTGCCAACCTAAAAGAGTCCCCACTGCTGCAAGC  639

seq1  AGAATGCCCACTCTCCACAGAACTGAAAAATTAAGCCACGCAAAGTGGCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCCCACTCTCCACAGAACTGAAAAATTAAGCCACGCAAAGTGGCT  689

seq1  CTCAATGCACAGCTAATTAGTTTCTTCATCAAGACACTGTTCCCCTAAAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGCACAGCTAATTAGTTTCTTCATCAAGACACTGTTCCCCTAAAG  739

seq1  CTGTCAAGAAAAAGTCTATTTCTGTCCTAAAGGACATTTTTCTCTTTCAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAAGAAAAAGTCTATTTCTGTCCTAAAGGACATTTTTCTCTTTCAA  789

seq1  AGAATGTACAGGTTTAAACACAACTCTTTATTATGATTATTATTATTATC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTACAGGTTTAAACACAACTCTTTATTATGATTATTATTATTATC  839

seq1  ACTATTATTATTGTCTCTGTCTTTGGTCTTGTCTGAGAAAGGGGAATAGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTATTATTGTCTCTGTCTTTGGTCTTGTCTGAGAAAGGGGAATAGC  889

seq1  AGTGTATTTTCAAAAGACCCTCCATTATGCATTAGGGGAAAGCAACCTGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATTTTCAAAAGACCCTCCATTATGCATTAGGGGAAAGCAACCTGG  939

seq1  CCAGGGAGACTAACTAACATGAACTACAGCAATTTAAAAACTGAGACCGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAGACTAACTAACATGAACTACAGCAATTTAAAAACTGAGACCGT  989

seq1  GTGCCATTTAAGAAGTCCTAAAAGCAAATCAAATGGGATAGGTCTGAAAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATTTAAGAAGTCCTAAAAGCAAATCAAATGGGATAGGTCTGAAAT  1039

seq1  CAGTGTTCTATCCTAACCGGGATAGCCATCTGCCCAGCCTAGAAGGCCTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTCTATCCTAACCGGGATAGCCATCTGCCCAGCCTAGAAGGCCTA  1089

seq1  CTGTTTGCATTTCACTTTTTAACAGACATCCTAAGAGACTCCAGAAGCTG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGCATTTCACTTTTTAACAGACATCCTAAGAGACTCCAGAAGCTG  1139

seq1  TCATCTGTCAGAAAGGCTGTGCAAAGGTCAATCCCGGGCATCTTTGGAAT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGTCAGAAAGGCTGTGCAAAGGTCAATCCCGGGCATCTTTGGAAT  1189

seq1  TC  1198
      ||
seq2  TC  1191