BAC Information

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BAC

Clone NameB6Ng01-173H08
Chromosome5 (Build37)
Map Location 47,667,385 - 47,668,537
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666103
Downstream geneLOC100040865, LOC100040876, Slit2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173H08.bB6Ng01-173H08.g
ACCGA001798GA001799
length9541,149
definitionB6Ng01-173H08.b B6Ng01-173H08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttgatccacttagacttgactttatttcaagaagataagcatg
gatcaatcacattcttctacatgataaccatcagttatgctagcaccatt
tgtggaaaattctgtcttgtttccattggatggttttagctcccttgtca
aaaatcaagtgaccataagtgtgtgggttcatttatgggtcttcaattct
attccattggtttagctgtcggttgctataccagtaccatgcagtttttt
tatcacaattgctctatagtacagctttagatcaggcatggtgattccac
cagaggttcttttatcattgagaagagtttttgctattctaggttttttg
ttattccagatgaatttgcaaattgccctttctaattcattgaagaattg
agttggaatttttatggggattccattgaatctgtagattgctttcaaca
agataggcatttttactatattaaccctgccaatccatgagcatgggaga
tctttccattttctgagataatttttgatttctttcttcagagacatgaa
gttttcatcatacagatctttcatttccttagtcagagtcatgccaaagt
attttatattatttgtgactattgtgaagggtgttgtttcccttatttct
ttctcagcctgtttatcctttgtgcagagaaaggccattggtttgcttga
gttaattttatttccagctacttcactgaagctgtttatcaggcttagga
gttctctggtggattttgtagggtcacttataaatactatcatatcatca
gcaaatagtgatattttgacttcttcctttcccatttgtatcccttgacc
tccctttgttgtctaattactctggctaggactcaagcactaatattgta
ttagtagggagaaagtgggcaagccttgtctagaccctgattttaagtca
attg

gaattccagagttattaatgattttacatttcttatctcctgggtataaa
ctctaatctgggttctttcaaaactcaggaaaatagttaatagtagactc
aaattgatcccagaatttcttttgatctatgatgtttctaaaaaaaaaga
tagggatgaccataaggagcatgtacagtctgtgagggaaaattttccca
cagtaggacaccaagagttaagtgaccaaagccataaaatggtatgtggt
cagaggtaggataaactcttgtatttcccacccttcctgttacactgagc
tttgcagctcttttaacccaagatactgataaacattcgagacagctttc
tctgcccatgtattctgtgcacttgatttcctgtctttttttaccaacag
ctgcgataagaagaaactttggagccagtttgagttttctattagttatt
tctctgaatttataagtacactgaggttaaagtacagagttaagagacac
ataagattttttttattgttttctaaaccataaatatgctcccttaatta
tctgcatttaaaggaagaatttgggctaggaaaggaaataggaaccctgt
ggcccagtacagcttagcctatttgttaacgttatcagcgcatattcaga
ggtacataacagatttctaaggaggcccagtgttctgcagctgggagaag
aagggcaaaaggtgaattgtattttttaagcctgtcactttgaaagctcc
ctgcttccaaactcaatacatctccaggattgtcacagcagcagttcagc
aggagaagcaaggcatctttggaagtaactacacttagcactcttttaat
ctctccctaggcctgtgagaacttgtttatcaggcagctttttctaagta
ctctgctctttggtggatgaatttggcaatctagcatctgtagagttaaa
aatagagaaggcctcagagaaaggcgatttcttttaaataagatctgaat
ggataaagcataagtgacttccctgcaacaagttcaatcctcatagaata
atatcggtccactctgatcctattctttgaacactgagcccttttcatgg
gcctatatatgatgcagtttatggtaggtacgcgaatgacaccatgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_47667385_47668537
seq2: B6Ng01-173H08.g_68_1216

seq1  GAATTCCAGAGTTATTAATGATTTTACATTTCTTATCTCCTGGGTATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGTTATTAATGATTTTACATTTCTTATCTCCTGGGTATAAA  50

seq1  CTCTAATCTGGGTTCTTTCAAAACTCAGGAAAATAGTTAATAGTAGACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATCTGGGTTCTTTCAAAACTCAGGAAAATAGTTAATAGTAGACTC  100

seq1  AAATTGATCCCAGAATTTCTTTTGATCTATGATGTTTCTAAAAAAAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGATCCCAGAATTTCTTTTGATCTATGATGTTTCTAAAAAAAAAGA  150

seq1  TAGGGATGACCATAAGGAGCATGTACAGTCTGTGAGGGAAAATTTTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATGACCATAAGGAGCATGTACAGTCTGTGAGGGAAAATTTTCCCA  200

seq1  CAGTAGGACACCAAGAGTTAAGTGACCAAAGCCATAAAATGGTATGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGACACCAAGAGTTAAGTGACCAAAGCCATAAAATGGTATGTGGT  250

seq1  CAGAGGTAGGATAAACTCTTGTATTTCCCACCCTTCCTGTTACACTGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTAGGATAAACTCTTGTATTTCCCACCCTTCCTGTTACACTGAGC  300

seq1  TTTGCAGCTCTTTTAACCCAAGATACTGATAAACATTCGAGACAGCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGCTCTTTTAACCCAAGATACTGATAAACATTCGAGACAGCTTTC  350

seq1  TCTGCCCATGTATTCTGTGCACTTGATTTCCTGTCTTTTTTTACCAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCATGTATTCTGTGCACTTGATTTCCTGTCTTTTTTTACCAACAG  400

seq1  CTGCGATAAGAAGAAACTTTGGAGCCAGTTTGAGTTTTCTATTAGTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGATAAGAAGAAACTTTGGAGCCAGTTTGAGTTTTCTATTAGTTATT  450

seq1  TCTCTGAATTTATAAGTACACTGAGGTTAAAGTACAGAGTTAAGAGACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAATTTATAAGTACACTGAGGTTAAAGTACAGAGTTAAGAGACAC  500

seq1  ATAAGATTTTTTTTATTGTTTTCTAAACCATAAATATGCTCCCTTAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATTTTTTTTATTGTTTTCTAAACCATAAATATGCTCCCTTAATTA  550

seq1  TCTGCATTTAAAGGAAGAATTTGGGCTAGGAAAGGAAATAGGAACCCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATTTAAAGGAAGAATTTGGGCTAGGAAAGGAAATAGGAACCCTGT  600

seq1  GGCCCAGTACAGCTTAGCCTATTTGTTAACGTTATCAGCGCATATTCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGTACAGCTTAGCCTATTTGTTAACGTTATCAGCGCATATTCAGA  650

seq1  GGTACATAACAGATTTCTAAGGAGGCCCAGTGTTCTGCAGCTGGGAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACATAACAGATTTCTAAGGAGGCCCAGTGTTCTGCAGCTGGGAGAAG  700

seq1  AAGGGCAAAAGGTGAATTGTATTTTTTAAGCCTGTCACTTTGAAAGCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAAAAGGTGAATTGTATTTTTTAAGCCTGTCACTTTGAAAGCTCC  750

seq1  CTGCTTCCAAACTCAATACATCTCCAGGATTGTCACAGCAGCAGTTCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCAAACTCAATACATCTCCAGGATTGTCACAGCAGCAGTTCAGC  800

seq1  AGGAGAAGCAAAGGCATCTTTGGAAGTAACTACACTTAGCACTCTTTTAA  850
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGC-AAGGCATCTTTGGAAGTAACTACACTTAGCACTCTTTTAA  849

seq1  TCTCTCCCTAGGCCTGTGAGAACTTGTTTATCAGGCAGCTTTTTCTAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCTAGGCCTGTGAGAACTTGTTTATCAGGCAGCTTTTTCTAAGT  899

seq1  ACTCTGCTCTTTGGTGGATGAATTTGGCAATCTAGCATCTGTAGAGTT-A  949
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACTCTGCTCTTTGGTGGATGAATTTGGCAATCTAGCATCTGTAGAGTTAA  949

seq1  TAATAGAG-AGGCCTCAGAGAAAGGCGATTTCTTTTAAAT-AGATCTGAA  997
       ||||||| ||||||||||||||||||||||||||||||| |||||||||
seq2  AAATAGAGAAGGCCTCAGAGAAAGGCGATTTCTTTTAAATAAGATCTGAA  999

seq1  TGGAT-AAGCATTAAGTGACTTCCCTGCAAACAAGTTCAAATCCTCATAG  1046
      ||||| ||||| |||||||||||||||| ||||||||| |||||||||||
seq2  TGGATAAAGCA-TAAGTGACTTCCCTGC-AACAAGTTC-AATCCTCATAG  1046

seq1  AATATATTCGGGTTCCACTCTGATCCTATTCTTTGAACACTTGAGCCCCT  1096
      ||||   ||||  ||||||||||||||||||||||||||| |||| ||||
seq2  AATAATATCGG--TCCACTCTGATCCTATTCTTTGAACAC-TGAG-CCCT  1092

seq1  TTTCATGGG-CTAT-TATGATGCAGTTTTATGGTAAGTTACGCG-ATGAC  1143
      ||||||||| |||| |||||||||| |||||||| || |||||| |||||
seq2  TTTCATGGGCCTATATATGATGCAG-TTTATGGT-AGGTACGCGAATGAC  1140

seq1  ACCAATGTGC  1153
      ||| ||||||
seq2  ACC-ATGTGC  1149


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