BAC Information

Click to search

BAC

Clone NameB6Ng01-173I03
Chromosome5 (Build37)
Map Location 14,236,226 - 14,363,582
singlet/doubletdoublet
Overlap geneSema3e
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, LOC100042957
Downstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173I03.bB6Ng01-173I03.g
ACCGA001836GA001837
length1,1821,032
definitionB6Ng01-173I03.b B6Ng01-173I03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,362,382 - 14,363,582)(14,236,226 - 14,237,290)
sequence
gaattcagaaaaacatgatcagaaaagcaggtaaataaaagccagtaaac
acatactaaatattaacagagaaatccttttccagatctttcccaggaca
gaacaatttaaagacaatcttctggcacatatcatagattctatctggga
aagcatgaaagcatggcagaaggtcatatccagattcagagtccagtgac
cagatttgactctatagctatattctgacatccaacaagaataatcatgt
cttataaattgagtgtaaatatttatcacaggaggcatgaaatccagccc
aggaactatccagggaacaaaatgcactggagataaaaaaagccctctgc
ttttaaatcctgaagtctctcttacagtttccgaacccattgtttaccat
ggatcattctttcaaacatgttatgacacatgacaaaggaaaaaaaacta
ttcatacacaaaaatcttaatatactttttcatggtgatattattcaaaa
gagctgaaaacctgtaaggacatataaggtccttcagggaggaaagagtt
aaacagggtataaactctaataatgacataatacttttgagaaaaagcaa
acctactactgattggagtgtaactcagtagtaaggtgttttcatagtat
gctagagatcgggagtttgatgctataaacaaacaagcaaacaaacaaat
aaataaaggatatattaatgatttggtaggatgatttgatttatctaatc
atccaatattagaagtggaagcatagggataaacagcatatacaatcgct
gtggcatcttgtatcatcttgaatgtgactgtgagccattcagtagtgaa
actgctgtgaggttctagatggagtcatggctctgtatcttgactgtgct
gatagttacacaaattcacacttgacatgtgatgtagacatttacacaca
cactacattattgctaatttcttgagctgttgtaatatatgattatataa
aattaaacattgcaggaatttggataagggcacagggatccttattatct
tatcattgcatgcctgtgcttctatgattactggtagatggagagtcact
ttttagatgcaagttagtctagtcacacagcatagagaaatgaactatgc
ctgtgattggcagcaataatttggaactatgt
gaattctataaattctgctctgttaatcttgtttcttatagcaacagctt
tacattggatcagcctctgctgtggcacaagtcagattccatcactgcga
catgtatggcagtgcttgtgctgactgctgcctggctcgagacccgtact
gtgcctgggatggcatatcctgctccaggtactacccaacaggtgcacac
gcaaagaggtaagtctctcactcctctgaatgtttccattttcaggggaa
aaaatcatatacatatacatatacatatacatatacatatacatatacat
atacatatacatatacacatatacacatatacacatatacacatacacat
acacatacacatacacatacatatacatatacatctgatatatatatgta
tgtatatatatatatatatatatatatatatatacacactctgatctttt
ttttcttttttgtgtccaatcaatgaaaattacattttttaagtctaaat
aaactaccctacttatattgtgatcgtaaggtaagcattcatacgtgaaa
tttttcttcacatactgttgatgcattacaacgtacgctgaccagacctg
atcgtcccatttggagttttcctttttatctcactttgcattaaatctcc
ccctctttttattctttttccctgcaaaataaacttaaagcatagaaatg
gcatgccaccacacgtgagggattcagggacttaaaaagaaaataaataa
ataaatcccaaaacacagcctgcagtttcccatggcccctcaggcagctg
ctcttcatttattcatttagaaagtgaatagttaactcctaggcaatcgc
atgacctgtgtaattaatgaaacgtgtgatttaattcacacaatgaaggt
acaagagacctctgactctatgtctatagctttatgaagtcatgcatttg
cagaagtaactcagctatgttaaacagaatttagctcacaagccttttga
ggtattccatcaagctacatgagtgatacata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14362382_14363582
seq2: B6Ng01-173I03.b_45_1226 (reverse)

seq1  ACATAGT--CCAATTATTGCTGCCATATCCACACAGCATAAGTCCATTCT  48
      |||||||  | |||||||||||||| || ||||  |||||  ||  ||||
seq2  ACATAGTTCCAAATTATTGCTGCCA-AT-CACA-GGCATAGTTCATTTCT  47

seq1  CTATGCTGTGTGGAACTTACCACTAAC-TGCATTCCTAAAAAGTGACTCT  97
      ||||||||||||  |||    |||||| |||||  |||||||||||||||
seq2  CTATGCTGTGTG--ACT--AGACTAACTTGCAT--CTAAAAAGTGACTCT  91

seq1  CCATCCTTACCAGTTATCAATTAGAAGCACAGGGGCATTGCAATGATAAG  147
      |||||  ||||||| ||||  ||||||||||  |||| ||||||||||||
seq2  CCATC--TACCAGTAATCA--TAGAAGCACA--GGCA-TGCAATGATAAG  134

seq1  AT-ATAAGGATCCCTTGTGCCCTTTATCCAAATTCCTGCAATGTTTAAAT  196
      || ||||||||||| ||||||| ||||||||||||||||||||||| |||
seq2  ATAATAAGGATCCC-TGTGCCC-TTATCCAAATTCCTGCAATGTTT-AAT  181

seq1  TTTATATAATCATATTATTACAAACAAGCTCAAGAAATTAGCAATAATGT  246
      |||||||||||||| ||||||||   ||||||||||||||||||||||||
seq2  TTTATATAATCATA-TATTACAA--CAGCTCAAGAAATTAGCAATAATGT  228

seq1  AGTGTGTGTGTAAATGTCTACATCACATGTCAAGTGTGAATTTGTGTAAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGTGTAAATGTCTACATCACATGTCAAGTGTGAATTTGTGTAAC  278

seq1  TATCAGCACAGTCAAGATACAGAGCCATGACTCCATCTAGAACCTCACAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGCACAGTCAAGATACAGAGCCATGACTCCATCTAGAACCTCACAG  328

seq1  CAGTTTCACCTACTGAATGGCTCACAGTCACATTCAAGATGATACAAGAT  396
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCA-CTACTGAATGGCTCACAGTCACATTCAAGATGATACAAGAT  377

seq1  GCCACAGCGATTGTATATGCTGTTTATCCCTATGCTTCCACTTCTAATAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGCGATTGTATATGCTGTTTATCCCTATGCTTCCACTTCTAATAT  427

seq1  TGGATGATTAGATAAATCAAATCATCCTACCAAATCATTAATATATCCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGATTAGATAAATCAAATCATCCTACCAAATCATTAATATATCCTT  477

seq1  TATTTATTTGTTTGTTTGCTTGTTTGTTTATAGCATCAAACTCCCGATCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTGTTTGTTTGCTTGTTTGTTTATAGCATCAAACTCCCGATCT  527

seq1  CTAGCATACTATGAAAACACCTTACTACTGAGTTACACTCCAATCAGTAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATACTATGAAAACACCTTACTACTGAGTTACACTCCAATCAGTAG  577

seq1  TAGGTTTGCTTTTTCTCAAAAGTATTATGTCATTATTAGAGTTTATACCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTGCTTTTTCTCAAAAGTATTATGTCATTATTAGAGTTTATACCC  627

seq1  TGTTTAACTCTTTCCTCCCTGAAGGACCTTATATGTCCTTACAGGTTTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAACTCTTTCCTCCCTGAAGGACCTTATATGTCCTTACAGGTTTTC  677

seq1  AGCTCTTTTGAATAATATCACCATGAAAAAGTATATTAAGATTTTTGTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTTTGAATAATATCACCATGAAAAAGTATATTAAGATTTTTGTGT  727

seq1  ATGAATAGTTTTTTTTCCTTTGTCATGTGTCATAACATGTTTGAAAGAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAGTTTTTTTTCCTTTGTCATGTGTCATAACATGTTTGAAAGAAT  777

seq1  GATCCATGGTAAACAATGGGTTCGGAAACTGTAAGAGAGACTTCAGGATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATGGTAAACAATGGGTTCGGAAACTGTAAGAGAGACTTCAGGATT  827

seq1  TAAAAGCAGAGGGCTTTTTTTATCTCCAGTGCATTTTGTTCCCTGGATAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCAGAGGGCTTTTTTTATCTCCAGTGCATTTTGTTCCCTGGATAG  877

seq1  TTCCTGGGCTGGATTTCATGCCTCCTGTGATAAATATTTACACTCAATTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGGCTGGATTTCATGCCTCCTGTGATAAATATTTACACTCAATTT  927

seq1  ATAAGACATGATTATTCTTGTTGGATGTCAGAATATAGCTATAGAGTCAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACATGATTATTCTTGTTGGATGTCAGAATATAGCTATAGAGTCAA  977

seq1  ATCTGGTCACTGGACTCTGAATCTGGATATGACCTTCTGCCATGCTTTCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGTCACTGGACTCTGAATCTGGATATGACCTTCTGCCATGCTTTCA  1027

seq1  TGCTTTCCCAGATAGAATCTATGATATGTGCCAGAAGATTGTCTTTAAAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCCCAGATAGAATCTATGATATGTGCCAGAAGATTGTCTTTAAAT  1077

seq1  TGTTCTGTCCTGGGAAAGATCTGGAAAAGGATTTCTCTGTTAATATTTAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGTCCTGGGAAAGATCTGGAAAAGGATTTCTCTGTTAATATTTAG  1127

seq1  TATGTGTTTACTGGCTTTTATTTACCTGCTTTTCTGATCATGTTTTTCTG  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTTTACTGGCTTTTATTTACCTGCTTTTCTGATCATGTTTTTCTG  1177

seq1  AATTC  1201
      |||||
seq2  AATTC  1182

seq1: chr5_14236226_14237290
seq2: B6Ng01-173I03.g_69_1100

seq1  GAATTCTATAAATTCTGCTCTGTTAATCTTGTTTCTTATAGCAACAGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAAATTCTGCTCTGTTAATCTTGTTTCTTATAGCAACAGCTT  50

seq1  TACATTGGATCAGCCTCTGCTGTGGCACAAGTCAGATTCCATCACTGCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGGATCAGCCTCTGCTGTGGCACAAGTCAGATTCCATCACTGCGA  100

seq1  CATGTATGGCAGTGCTTGTGCTGACTGCTGCCTGGCTCGAGACCCGTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATGGCAGTGCTTGTGCTGACTGCTGCCTGGCTCGAGACCCGTACT  150

seq1  GTGCCTGGGATGGCATATCCTGCTCCAGGTACTACCCAACAGGTGCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGGGATGGCATATCCTGCTCCAGGTACTACCCAACAGGTGCACAC  200

seq1  GCAAAGAGGTAAGTCTCTCACTCCTCTGAATGTTTCCATTTTCAGGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAGGTAAGTCTCTCACTCCTCTGAATGTTTCCATTTTCAGGGGAA  250

seq1  AAAATCATATACATATACATATACATATACATATACATATACATATACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATATACATATACATATACATATACATATACATATACATATACAT  300

seq1  ATACATATACATATACACATATACACATATACACATATACACATACACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATACATATACACATATACACATATACACATATACACATACACAT  350

seq1  ACACATACACATACACATACATATACATATACATCTGATATATATATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACACATACACATACATATACATATACATCTGATATATATATGTA  400

seq1  TGTATATATATATATATATATATATATATATATACACACTCTGATCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATATATATATATATATATATATATATATACACACTCTGATCTTTT  450

seq1  TTTTCTTTTTTGTGTCCAATCAATGAAAATTACATTTTTTAAGTCTAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTTTGTGTCCAATCAATGAAAATTACATTTTTTAAGTCTAAAT  500

seq1  AAACTACCCTACTTATATTGTGATCGTAAGGTAAGCATTCATACGTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACCCTACTTATATTGTGATCGTAAGGTAAGCATTCATACGTGAAA  550

seq1  TTTTTCTTCACATACTGTTGATGCATTACAACGTACGCTGACCAGACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTCACATACTGTTGATGCATTACAACGTACGCTGACCAGACCTG  600

seq1  ATCGTCCCATTTGGAGTTTTCCTTTTTATCTCACTTTGCATTAAATCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTCCCATTTGGAGTTTTCCTTTTTATCTCACTTTGCATTAAATCTCC  650

seq1  CCCTCTTTTTATTCTTTTTCCCTGCAAAATAAACTTAAAGCATAGAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTTTTATTCTTTTTCCCTGCAAAATAAACTTAAAGCATAGAAATG  700

seq1  GCATGCCACCACACGTGAGGGATTCAGGGACTTAAAAAGAAAATAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCACCACACGTGAGGGATTCAGGGACTTAAAAAGAAAATAAATAA  750

seq1  ATAAATCCCAAAACACAGCCTGCAGTTTCCCATGGCCCCTCAGGCAGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCCCAAAACACAGCCTGCAGTTTCCCATGGCCCCTCAGGCAGCTG  800

seq1  CTCTTCATTTATTCATTTAGAAAGTGAATAGTTTAACTCCTAGGCAATCG  850
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTCTTCATTTATTCATTTAGAAAGTGAATAG-TTAACTCCTAGGCAATCG  849

seq1  CATGACCTGTGTAATTAATGAAACGTGTGATTTAATTCAACACAAATGAA  900
      |||||||||||||||||||||||||||||||||||||| |||| |||| |
seq2  CATGACCTGTGTAATTAATGAAACGTGTGATTTAATTC-ACAC-AATG-A  896

seq1  AGGTACCAAGAGACCTCTGAACTCTAATGTCTATAGCTTTATGAAGTCAT  950
      ||||| ||||||||||||| ||||| ||||||||||||||||||||||||
seq2  AGGTA-CAAGAGACCTCTG-ACTCT-ATGTCTATAGCTTTATGAAGTCAT  943

seq1  TGCCATTTGCAAGGAAAAGTAAACTCAGGCTATGTTTAAACAGGATTTTA  1000
         |||||||    | |||| |||||| |||||| |||||||| ||||  
seq2  --GCATTTGC----AGAAGT-AACTCA-GCTATG-TTAAACAGAATTT--  982

seq1  GGCTCACAAAGCCCTTTGAAGGTTATTTTTCCACTCAAGCTACATGAGGT  1050
       |||||| ||||| ||||| |     | ||||| ||||||||||||||  
seq2  AGCTCAC-AAGCCTTTTGAGG-----TATTCCA-TCAAGCTACATGAG--  1023

seq1  TGTATACAATACATA  1065
      ||      |||||||
seq2  TG------ATACATA  1032