BAC Information

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BAC

Clone NameB6Ng01-173J07
Chromosome5 (Build37)
Map Location 83,328,671 - 83,436,543
singlet/doubletdoublet
Overlap genenone
Upstream geneEG433912
Downstream geneLOC100039434, Srd5a2l2, LOC100039608, LOC231368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173J07.bB6Ng01-173J07.g
ACCGA001890GA001891
length530940
definitionB6Ng01-173J07.b B6Ng01-173J07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,328,671 - 83,329,206)(83,435,613 - 83,436,543)
sequence
tttcctaggagtgcagaagactcctaagtcagaggacaagatgaagtgag
atctatgaccacacatttgaaagaccctctgctgtaaagctaagccccat
aaaccaaaacaaaaataactggagaagaaacaagacagatagttttatgt
tattttttcggggtcttttataacatcagaggtaccaaggtcattttgtc
acactcttagtccttgactctctttttatcagtcattatgatttagaagc
acgaatatatacatcgttattatttttgattatcggaaagaaaaacaaag
taaactttttcaaacttatttaatcagaaaaaatgagctgacctccaaat
aagatgaaaagttaggaaaaaatgctcaaagtactgtaatttccttttgt
tcatttttgtaatgtttttatgttttataaatacatgtataaaatataat
aaagtttccttctgttgatattaaatttcttgtgcctgtgtgagtgtgtg
tctgtgtgtgtgtgtgtgtgtgtgtgtgtg

gaattcaatatcatctgtgccgtgaagcatgcatctctgctttctgtgcg
ggaagaattctttgatgggctgatggacactaactgtttattaattcacc
tgcacatctactgcacagcttcggtctggcttcttctctgtacggcttca
tttttgcatttgcccatacttgaagagggcatctaagtatatttacaagg
gaagacatgtgggagttggttattacgatgttgaatgcaaactttagata
catgagtactctttaagggtcaaaagaaacagaagtgatcttacatagat
aggttcctactgtagcagtagaaagtacttggaattttaatagactctgg
ttattatgtttggattaacctttacctatcaccagcatctttccctcttt
ctttttttccatcagtatttggttttctatactatctaatcattttggtg
tgtgtgtgtgtgtgcgtgtgtgtgcctgtgtctgtgtgtttaactgtggc
agcaattaatgaaaatattggctgtgattttgaaagagagaaaggaggga
tatataagaagtattggtaggatgaaaaagaaggggaaatggtataatta
taatcttaaaaattaatacacatatatacatgtatagagatattaataca
tacatgtatatgacattccttatgagttaaaatgaagaagttaatgttag
gttttgacagagatgatatgatattgacaattcattgccctaatttttcc
aggttgattgagtttaatttgacaagtaaagtttaaaataatgagtaata
tttgcatattatttgggctttacctgcaccatttgtatttcatttattgt
gcatattggaggtgctttgcccagggaggatggcattatcccctgaatcc
tttgcatcagcaccggggaaacggcgtcttttgtgtctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_83328671_83329206
seq2: B6Ng01-173J07.b_47_582

seq1  GAATTCTTTCCTAGGAGTGCAGAAGACTCCTAAGTCAGAGGACAAGATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCTAGGAGTGCAGAAGACTCCTAAGTCAGAGGACAAGATGA  50

seq1  AGTGAGATCTATGACCACACATTTGAAAGACCCTCTGCTGTAAAGCTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGATCTATGACCACACATTTGAAAGACCCTCTGCTGTAAAGCTAAG  100

seq1  CCCCATAAACCAAAACAAAAATAACTGGAGAAGAAACAAGACAGATAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATAAACCAAAACAAAAATAACTGGAGAAGAAACAAGACAGATAGTT  150

seq1  TTATGTTATTTTTTCGGGGTCTTTTATAACATCAGAGGTACCAAGGTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTATTTTTTCGGGGTCTTTTATAACATCAGAGGTACCAAGGTCAT  200

seq1  TTTGTCACACTCTTAGTCCTTGACTCTCTTTTTATCAGTCATTATGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCACACTCTTAGTCCTTGACTCTCTTTTTATCAGTCATTATGATTT  250

seq1  AGAAGCACGAATATATACATCGTTATTATTTTTGATTATCGGAAAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCACGAATATATACATCGTTATTATTTTTGATTATCGGAAAGAAAA  300

seq1  ACAAAGTAAACTTTTTCAAACTTATTTAATCAGAAAAAATGAGCTGACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTAAACTTTTTCAAACTTATTTAATCAGAAAAAATGAGCTGACCT  350

seq1  CCAAATAAGATGAAAAGTTAGGAAAAAATGCTCAAAGTACTGTAATTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAAGATGAAAAGTTAGGAAAAAATGCTCAAAGTACTGTAATTTCC  400

seq1  TTTTGTTCATTTTTGTAATGTTTTTATGTTTTATAAATACATGTATAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCATTTTTGTAATGTTTTTATGTTTTATAAATACATGTATAAAA  450

seq1  TATAATAAAGTTTCCTTCTGTTGATATTAAATTTCTTGTGCCTGTGTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAAGTTTCCTTCTGTTGATATTAAATTTCTTGTGCCTGTGTGAG  500

seq1  TGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTG  536
      ||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTG  536


seq1: chr5_83435613_83436543
seq2: B6Ng01-173J07.g_70_1009 (reverse)

seq1  CTAGACAC-AAGGACGCCTGTCTCCCCGGTAGCTGATGCAAAGGATCAGG  49
      |||||||| || |||||| || |||||||| |||||||||||||||   |
seq2  CTAGACACAAAAGACGCC-GTTTCCCCGGT-GCTGATGCAAAGGATTCAG  48

seq1  GGGATAATGCCATCCTCCTTGCGCAAAGCACCTACAATATGCAC-ATAAA  98
      |||||||||||||||||| || ||||||||||| |||||||||| |||||
seq2  GGGATAATGCCATCCTCCCTGGGCAAAGCACCTCCAATATGCACAATAAA  98

seq1  TG-AATACAAAT-GTGC-TGTAAAGCCAAAAT-ATATGC-AATATTACTC  143
      || ||||||||| ||||  |||||||| |||| |||||| ||||||||||
seq2  TGAAATACAAATGGTGCAGGTAAAGCCCAAATAATATGCAAATATTACTC  148

seq1  ATTAATTTAAACTTTACTTGTCAAATTAAACTCAATCAACCTGGAAAAAT  193
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTAAACTTTACTTGTCAAATTAAACTCAATCAACCTGGAAAAAT  198

seq1  TA-GGCAATGAATTGTC-ATATCATATCATCTCTGTCAAAA-CTAACATT  240
      || |||||||||||||| ||||||||||||||||||||||| ||||||||
seq2  TAGGGCAATGAATTGTCAATATCATATCATCTCTGTCAAAACCTAACATT  248

seq1  AACTTCTTCATTTT-ACTCATAAGGAATGTCATATACATGTATGTATTAA  289
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AACTTCTTCATTTTAACTCATAAGGAATGTCATATACATGTATGTATTAA  298

seq1  TATCTCTATACATGTATATATGTGTATTAATTTTTAAGATTATAATTATA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTATACATGTATATATGTGTATTAATTTTTAAGATTATAATTATA  348

seq1  CCATTTCCCCTTCTTTTTCATCCTACCAATACTTCTTATATATCCCTCCT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCCCCTTCTTTTTCATCCTACCAATACTTCTTATATATCCCTCCT  398

seq1  TTCTCTCTTTCAAAATCACAGCCAATATTTTCATTAATTGCTGCCACAGT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTTTCAAAATCACAGCCAATATTTTCATTAATTGCTGCCACAGT  448

seq1  TAAACACACAGACACAGGCACACACACGCACACACACACACACACCAAAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACACAGACACAGGCACACACACGCACACACACACACACACCAAAA  498

seq1  TGATTAGATAGTATAGAAAACCAAATACTGATGGAAAAAAAGAAAGAGGG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAGATAGTATAGAAAACCAAATACTGATGGAAAAAAAGAAAGAGGG  548

seq1  AAAGATGCTGGTGATAGGTAAAGGTTAATCCAAACATAATAACCAGAGTC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGCTGGTGATAGGTAAAGGTTAATCCAAACATAATAACCAGAGTC  598

seq1  TATTAAAATTCCAAGTACTTTCTACTGCTACAGTAGGAACCTATCTATGT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAATTCCAAGTACTTTCTACTGCTACAGTAGGAACCTATCTATGT  648

seq1  AAGATCACTTCTGTTTCTTTTGACCCTTAAAGAGTACTCATGTATCTAAA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCACTTCTGTTTCTTTTGACCCTTAAAGAGTACTCATGTATCTAAA  698

seq1  GTTTGCATTCAACATCGTAATAACCAACTCCCACATGTCTTCCCTTGTAA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCATTCAACATCGTAATAACCAACTCCCACATGTCTTCCCTTGTAA  748

seq1  ATATACTTAGATGCCCTCTTCAAGTATGGGCAAATGCAAAAATGAAGCCG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTTAGATGCCCTCTTCAAGTATGGGCAAATGCAAAAATGAAGCCG  798

seq1  TACAGAGAAGAAGCCAGACCGAAGCTGTGCAGTAGATGTGCAGGTGAATT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAAGAAGCCAGACCGAAGCTGTGCAGTAGATGTGCAGGTGAATT  848

seq1  AATAAACAGTTAGTGTCCATCAGCCCATCAAAGAATTCTTCCCGCACAGA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAGTTAGTGTCCATCAGCCCATCAAAGAATTCTTCCCGCACAGA  898

seq1  AAGCAGAGATGCATGCTTCACGGCACAGATGATATTGAATTC  931
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAGATGCATGCTTCACGGCACAGATGATATTGAATTC  940


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