BAC Information

Click to search

BAC

Clone NameB6Ng01-173N24
Chromosome5 (Build37)
Map Location 39,908,874 - 40,057,367
singlet/doubletdoublet
Overlap geneHs3st1
Upstream geneWdr1, 4930421P07Rik, 6820424L24Rik, Clnk, LOC384174
Downstream geneEG665839, LOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173N24.bB6Ng01-173N24.g
ACCGA002107GA002108
length1,104498
definitionB6Ng01-173N24.b B6Ng01-173N24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,056,277 - 40,057,367)(39,908,874 - 39,909,298)
sequence
gaattccttagacattgcagagaccattttagaaaaaacaactatggtgt
gaactccaggcagtttctaattttgctcatgtcagctggtgctgcacggc
tttcgaaatgtagatcaaaatgcagattgctggttccaggtccagaattt
ctaattataagtgtccagggtctgacgattgcatttctaagatgttctca
ggtggaggaaagtacgtaacatgttgatgtgggaactggtcatgcttcag
gaagtactgacagagaagcaaagtggccatggaagttcactgtattacaa
gtcaggccttagaaacaatggcctcgcaactccttttaaagaaacagcta
ccctctgccagcagcccacaaagctgaaaagaaaatgtcctactaaaaac
tgaatgccttataacgccaagcctgagtctatgcccatgtgctggaacat
aaaatatggagtccttggtgtgattaccaaataaaagcagcagtttttta
cccatcttaatccattatatattgaataagagggatccatacacagaggg
ggtgtttctacagttcagtcatgatggagtactgatagagtcacgtcaag
gaaactaaagtaaatctagggtgtgtgttagaaagagggcagatgctcta
cttgggagactgaactgaaggtgactgtaatatggaaggggaggacaata
ttgactttcaggagccatgtacatgggagctattattaagtgggctttca
acacgcataatgggatgctttttcatgaatcatctcccttaatacactga
gctaaataactgcacatcattaacattattacttgaaaattgggaaaacc
gggggtacaaaaaatatcaagtgtcttttgttgtagtcattcagttgagt
ctcctgtgggccaacaacctaaaatgtcaggctgacatcagaaaccaatg
gtgctactttgggacaatgttgctgctttcttctttgtcagagtatctaa
cttcccaaaaagccctgaaaatcattgatttcaaacatggtggactgtga
taaaaataaagactgttatataaagggaaccacttttgtcttcacctaga
taga

actgcagggtaatggttgaggatgattggttgaagattctgcaatcaaag
tagtgaagatcagggataagaagccaagtctgtgtatacccagagctgtt
gacttccatagagaagacacagtgaagataattcaactgtagtccagagt
tatagttttaggagatatatttccataagtgcaatgctttatttatttta
gtgtactgtaaatttgtgattgacatacctatcagttttacatatttatg
ggctatagtgatatatatatatatatatatatatatatatatatatatat
atatatatatatatatatatatatagagagagagagagaggtgtgtgtat
aaaaaaaaaaaaaaataaacaaatatatatatatatatatatatatatat
atatatatacacacactcagtggggcagagagatgtttgtgtttgtgtgt
gtgtgaggggtgggtgtggggatgtgtgtgtatatatatatatatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_40056277_40057367
seq2: B6Ng01-173N24.b_34_1137 (reverse)

seq1  TCTATCTCAGTGAAGGAACAAAAGTGGTT-CCTTTATAT-ACAGTCTCTC  48
      |||||||  ||||||  |||||||||||| ||||||||| ||||||| | 
seq2  TCTATCTAGGTGAAG--ACAAAAGTGGTTCCCTTTATATAACAGTCTTTA  48

seq1  TTTTTATCACCAGTCCA-CATGTTTGAAATC-ATGATTTTCAGGGGCTTT  96
      ||||||||| ||||||| ||||||||||||| |||||||||| |||||||
seq2  TTTTTATCA-CAGTCCACCATGTTTGAAATCAATGATTTTCA-GGGCTTT  96

seq1  TTGGG-AGTTAGATACTCTGAC-AAGAAGGAAGCAGCAACA-TGTCC--A  141
      ||||| |||||||||||||||| |||||| ||||||||||| |||||  |
seq2  TTGGGAAGTTAGATACTCTGACAAAGAAGAAAGCAGCAACATTGTCCCAA  146

seq1  AGTAGCACCA-TGGTTTCTGATGTCAGCCTGACA-TTTAGGT--GTGGCC  187
      |||||||||| ||||||||||||||||||||||| |||||||   |||||
seq2  AGTAGCACCATTGGTTTCTGATGTCAGCCTGACATTTTAGGTTGTTGGCC  196

seq1  CACAGGAGACTC-ACTGAATGACTACAACAAAAGACACTTGATA-TTTTT  235
      |||||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  CACAGGAGACTCAACTGAATGACTACAACAAAAGACACTTGATATTTTTT  246

seq1  GTACCCCC-GTTTTCCCAATTTTCAAGTAATAATGTTAATGATGTGCAGT  284
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCCCGGTTTTCCCAATTTTCAAGTAATAATGTTAATGATGTGCAGT  296

seq1  TA-TTAGCTCAGTGTATTAAGGGAGATGATTCATGAAAAAGCATCCCATT  333
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGCTCAGTGTATTAAGGGAGATGATTCATGAAAAAGCATCCCATT  346

seq1  ATGCGTGTTGAAAGCCCACTTAATAATAGCTCCCATGTACATGGCTCCTG  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGTGTTGAAAGCCCACTTAATAATAGCTCCCATGTACATGGCTCCTG  396

seq1  AAAGTCAATATTGTCCTCCCCTTCCATATTACAGTCACCTTCAGTTCAGT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAATATTGTCCTCCCCTTCCATATTACAGTCACCTTCAGTTCAGT  446

seq1  CTCCCAAGTAGAGCATCTGCCCTCTTTCTAACACACACCCTAGATTTACT  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAGTAGAGCATCTGCCCTCTTTCTAACACACACCCTAGATTTACT  496

seq1  TTAGTTTCCTTGACGTGACTCTATCAGTACTCCATCATGACTGAACTGTA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTCCTTGACGTGACTCTATCAGTACTCCATCATGACTGAACTGTA  546

seq1  GAAACACCCCCTCTGTGTATGGATCCCTCTTATTCAATATATAATGGATT  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACCCCCTCTGTGTATGGATCCCTCTTATTCAATATATAATGGATT  596

seq1  AAGATGGGTAAAAAACTGCTGCTTTTATTTGGTAATCACACCAAGGACTC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGGTAAAAAACTGCTGCTTTTATTTGGTAATCACACCAAGGACTC  646

seq1  CATATTTTATGTTCCAGCACATGGGCATAGACTCAGGCTTGGCGTTATAA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTATGTTCCAGCACATGGGCATAGACTCAGGCTTGGCGTTATAA  696

seq1  GGCATTCAGTTTTTAGTAGGACATTTTCTTTTCAGCTTTGTGGGCTGCTG  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCAGTTTTTAGTAGGACATTTTCTTTTCAGCTTTGTGGGCTGCTG  746

seq1  GCAGAGGGTAGCTGTTTCTTTAAAAGGAGTTGCGAGGCCATTGTTTCTAA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGGTAGCTGTTTCTTTAAAAGGAGTTGCGAGGCCATTGTTTCTAA  796

seq1  GGCCTGACTTGTAATACAGTGAACTTCCATGGCCACTTTGCTTCTCTGTC  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGACTTGTAATACAGTGAACTTCCATGGCCACTTTGCTTCTCTGTC  846

seq1  AGTACTTCCTGAAGCATGACCAGTTCCCACATCAACATGTTACGTACTTT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTCCTGAAGCATGACCAGTTCCCACATCAACATGTTACGTACTTT  896

seq1  CCTCCACCTGAGAACATCTTAGAAATGCAATCGTCAGACCCTGGACACTT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACCTGAGAACATCTTAGAAATGCAATCGTCAGACCCTGGACACTT  946

seq1  ATAATTAGAAATTCTGGACCTGGAACCAGCAATCTGCATTTTGATCTACA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAGAAATTCTGGACCTGGAACCAGCAATCTGCATTTTGATCTACA  996

seq1  TTTCGAAAGCCGTGCAGCACCAGCTGACATGAGCAAAATTAGAAACTGCC  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGAAAGCCGTGCAGCACCAGCTGACATGAGCAAAATTAGAAACTGCC  1046

seq1  TGGAGTTCACACCATAGTTGTTTTTTCTAAAATGGTCTCTGCAATGTCTA  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTCACACCATAGTTGTTTTTTCTAAAATGGTCTCTGCAATGTCTA  1096

seq1  AGGAATTC  1091
      ||||||||
seq2  AGGAATTC  1104


seq1: chr5_39908874_39909298
seq2: B6Ng01-173N24.g_65_568

seq1  GAATTCACTGCAGGGTAATGGTTGAGGATGATTGGTTGAAGATTCTGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCAGGGTAATGGTTGAGGATGATTGGTTGAAGATTCTGCAA  50

seq1  TCAAAGTAGTGAAGATCAGGGATAAGAAGCCAAGTCTGTGTATACCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTAGTGAAGATCAGGGATAAGAAGCCAAGTCTGTGTATACCCAGA  100

seq1  GCTGTTGACTTCCATAGAGAAGACACAGTGAAGATAATTCAACTGTAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGACTTCCATAGAGAAGACACAGTGAAGATAATTCAACTGTAGTC  150

seq1  CAGAGTTATAGTTTTAGGAGATATATTTCCATAAGTGCAATGCTTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTATAGTTTTAGGAGATATATTTCCATAAGTGCAATGCTTTATTT  200

seq1  ATTTTAGTGTACTGTAAATTTGTGATTGACATACCTATCAGTTTTACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTGTACTGTAAATTTGTGATTGACATACCTATCAGTTTTACATA  250

seq1  TTTATGGGCTATAGTGATATATATATATATATATATATATATATATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGGCTATAGTGATATATATATATATATATATATATATATATATAT  300

seq1  ATATATATATATATTTGTGTGTATGTGTGT------------GTATGTGT  338
      |||||||||||||| | | | ||| | | |              | ||||
seq2  ATATATATATATATATATATATATATATATAGAGAGAGAGAGAGAGGTGT  350

seq1  GTGTATATATGTATGTATATATACACATATATGTTTGTATATGTATATAT  388
      ||||||| |   |   | | ||| ||| |||| | | ||||| |||||||
seq2  GTGTATAAAAAAAAAAAAAAATAAACAAATATATATATATATATATATAT  400

seq1  ATGTATATATATATA-----------------------------------  403
      || ||||||||||||                                   
seq2  ATATATATATATATACACACACTCAGTGGGGCAGAGAGATGTTTGTGTTT  450

seq1  --------------------------------TATATATATATATATATA  421
                                      | | ||||||||||||||
seq2  GTGTGTGTGTGAGGGGTGGGTGTGGGGATGTGTGTGTATATATATATATA  500

seq1  TATG  425
      ||||
seq2  TATG  504


| Home | SequenceCutter | Blast | Download |