BAC Information

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BAC

Clone NameB6Ng01-174B10
Chromosome5 (Build37)
Map Location 36,439,181 - 36,568,572
singlet/doubletdoublet
Overlap geneSorcs2, 2310020A21Rik
Upstream geneLrpap1, Adra2c, Hmx1, Cpz, Plk-ps1, 2310079F23Rik, Acox3, Htra3, Sh3tc1, Ablim2, Afap1, LOC100040209
Downstream geneGrpel1, Ccdc96, Tbc1d14, D5Ertd579e, LOC100040278, LOC100040825, Cno, Mrfap1, Man2b2, Ppp2r2c, Wfs1, Jakmip1, EG330070, Gm1043
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174B10.bB6Ng01-174B10.g
ACCGA002264GA002265
length746897
definitionB6Ng01-174B10.b B6Ng01-174B10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,439,181 - 36,439,923)(36,567,683 - 36,568,572)
sequence
gaattcagagcccacaggtcccttgtggccagtgtgaatccaccgtcctc
ctcattacctatgatgagcgataagcagcacacattgcaacgggagaaac
tgggtctgaggggcgccaaggggccttccagtcccttgggaagaaaaagg
gggcttcatgccagcatcagtgagcatggagaggcagttgggaaagttgc
tttatcaaagttgcaggcagtgtggaagagggaagtgtggacaaaggaac
accaagagcagactgcactctgtggtgcagtggtgaccagggcttggaca
ggggaggggcctggcctgggcattacctggcttcaagaatggcttctccc
cagggtcctccctcccaaccttccaaggttgaagttgggaacttcagggg
cctgccatggggcactctggtttgttctgaccctctcatcctgggccctc
aaggctgggacatactggcgtggtgaatgcatatgacagaacctgtaagc
atggacatgctgtggctgcccgatggagcacaccaccacacatgcctatt
ttatgccaggctggactcctggctgcactcctagtgcgctggggacaagg
acccttgtcccatgtgggcatcctccatacactttggggacactgacagc
ttaggcaaaaagcctgtcccagaggctgcagtggatgctcacctggtact
tgtagtgtagattttggaggctggggtgttgttctcctcagctgtc
gaattctcctgtgtaatcacttaaatacatttttaatgacaggtctggta
tttacattctgaaaatggctctgggaaatcgaagctgaatgcatttttaa
ttgttctgtgtttaatgggcctcacgtcagcagcctctccctcacgggct
tccttgacccatcaccagcaccttctctctgcatcctctgccagacttgg
atctgtgaacagtaccctaggttgggagagacatccgcatcttaggacct
gctggctggcaccagggaattgaagtctcctatctcatttttctctgggc
tcacagggcctacctaaggcttcctcattcaagctagagtcagcacactc
tgtccatccttaaaactctgggcacagtggctactgtgctactgggacaa
atgaccacaactggggaacttaaaacaacagccagggactctccagggtt
caaaccatggcgttacagggcagtgtttcccctgaagactgggaaaggag
gtcatcgtgtccctgccagcccctggtggctgtgtcactgagaccttgct
gctgtgtgttgatacgcatgtgacaatactgcccaggtgcatgtggacac
agtgtgcaggtgtgcgtgcctccgtgcacacgtgcctgtggcagccaaag
gtcaatcctcagtgccgttcctttggagacagtcgcttttgttgccgtct
tgtttttaaggcagaatctctcactggcctggagctggcccagcgggcta
agcaggctgatcagtaaaccccaggatactcctgactccacttcccagct
tcttagaagttgtgtaaccccaggtgtctgcattgtttccgtgggttcca
aggcattgaaacttcgggttctcccgctggcacagttggacacttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_36439181_36439923
seq2: B6Ng01-174B10.b_45_790

seq1  GAATTCAGAGCCCACAGGTCCCTTGTGGCCAGTGTGAAGCCAACCGTCCT  50
      |||||||||||||||||||||||||||||||||||||| || ||||||||
seq2  GAATTCAGAGCCCACAGGTCCCTTGTGGCCAGTGTGAATCC-ACCGTCCT  49

seq1  CCTCATTACCTATGATGAGCGATAAGCAGCAGACATTGCAACGGGAGAAA  100
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCTCATTACCTATGATGAGCGATAAGCAGCACACATTGCAACGGGAGAAA  99

seq1  CTGGGTCTGAGGGGCGCCAAGGGGCCTTCCAGTCCCTTGGGAAGAAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCTGAGGGGCGCCAAGGGGCCTTCCAGTCCCTTGGGAAGAAAAAG  149

seq1  GGGGCTTCATGCCAGCATCAGTGAGCATGGAGAGGCAGTTGGGAAAGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTCATGCCAGCATCAGTGAGCATGGAGAGGCAGTTGGGAAAGTTG  199

seq1  CTTTATCAAAGTTGCAGGCAGTGTGGAAGAGGGAAGTGTGGACAAAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCAAAGTTGCAGGCAGTGTGGAAGAGGGAAGTGTGGACAAAGGAA  249

seq1  CACCAAGAGCAGACTGCACTCTGTGGTGCAGTGGTGACCAGGGCTTGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGAGCAGACTGCACTCTGTGGTGCAGTGGTGACCAGGGCTTGGAC  299

seq1  AGGGGAGGGGCCTGGCCTGGGCATTACCTGGCTTCAAGAATGGCTTCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGGGGCCTGGCCTGGGCATTACCTGGCTTCAAGAATGGCTTCTCC  349

seq1  CCAGGGTCCTCCCTCCCAACCTTCCAAGGTTGAAGCTGGGAACTTCAGGG  400
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCAGGGTCCTCCCTCCCAACCTTCCAAGGTTGAAGTTGGGAACTTCAGGG  399

seq1  GCCTGCCATGGGGCACTCTGGCTTGTTCTGACCCTCTCATCCTGGGCCCT  450
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCCTGCCATGGGGCACTCTGGTTTGTTCTGACCCTCTCATCCTGGGCCCT  449

seq1  CAAGGCTGGGACATACTGGCGTGGTGAATGCATATGACAGAACCTGTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGGGACATACTGGCGTGGTGAATGCATATGACAGAACCTGTAAG  499

seq1  CATGGACATGCTGTGGCTGCCCGATGGAGCACACCACCACACATGCCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACATGCTGTGGCTGCCCGATGGAGCACACCACCACACATGCCTAT  549

seq1  TTTATGCCAGGCTGGACTCCTGGCTGCACTCCTAGTGCGCTGGGGACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCCAGGCTGGACTCCTGGCTGCACTCCTAGTGCGCTGGGGACAAG  599

seq1  GACCCTTGTCCCATGTGGGCATCCTCCATACAC-TTGGGGACACTGACAG  649
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GACCCTTGTCCCATGTGGGCATCCTCCATACACTTTGGGGACACTGACAG  649

seq1  CTTAGGC-AAAAGCCTGTCCCAGAGGCTGCAGTGGATGCTCACCTGG-AC  697
      ||||||| ||||||||||||||||||||||||||||||||||||||| ||
seq2  CTTAGGCAAAAAGCCTGTCCCAGAGGCTGCAGTGGATGCTCACCTGGTAC  699

seq1  GTGGAGTGGAGA-TTTGGAGGCAGGGGTGTTGTTCTCCTCTGCTGTC  743
       || |||| ||| ||||||||| ||||||||||||||||| ||||||
seq2  TTGTAGTGTAGATTTTGGAGGCTGGGGTGTTGTTCTCCTCAGCTGTC  746

seq1: chr5_36567683_36568572
seq2: B6Ng01-174B10.g_70_966 (reverse)

seq1  TAAAGTGTCC-ACTGTGCAAGCGGGAGAACCCGA--GTTCAATGCC-TGG  46
      |||||||||| ||||||| |||||||||||||||   ||||||||| |||
seq2  TAAAGTGTCCAACTGTGCCAGCGGGAGAACCCGAAGTTTCAATGCCTTGG  50

seq1  AACCCACGGAAACAATGCAGACA-CTGGGG-TACAC-ACTTCTA--GAGC  91
      ||||||||||||||||||||||| |||||| ||||| |||||||   |||
seq2  AACCCACGGAAACAATGCAGACACCTGGGGTTACACAACTTCTAAGAAGC  100

seq1  TGGGGAAGTGGAGTCAGGAGTATCCTGGGGTTTGCTGATCAGCCTGCTTA  141
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  T-GGGAAGTGGAGTCAGGAGTATCCTGGGGTTTACTGATCAGCCTGCTTA  149

seq1  GCCCGCTGGGCCAGCTCCAGGCCAGTGAGAGATTCTGCCTTAAAAACAAG  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGCTGGGCCAGCTCCAGGCCAGTGAGAGATTCTGCCTTAAAAACAAG  199

seq1  ACGGCAACAAAAGCGACTGTCTCCAAAGGAACGGCACTGAGGATTGACCT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCAACAAAAGCGACTGTCTCCAAAGGAACGGCACTGAGGATTGACCT  249

seq1  TTGGCTGCCACAGGCACGTGTGCACGGAGGCACGCACACCTGCACACTGT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGCCACAGGCACGTGTGCACGGAGGCACGCACACCTGCACACTGT  299

seq1  GTCCACATGCACCTGGGCAGTATTGTCACATGCGTATCAACACACAGCAG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACATGCACCTGGGCAGTATTGTCACATGCGTATCAACACACAGCAG  349

seq1  CAAGGTCTCAGTGACACAGCCACCAGGGGCTGGCAGGGACACGATGACCT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCTCAGTGACACAGCCACCAGGGGCTGGCAGGGACACGATGACCT  399

seq1  CCTTTCCCAGTCTTCAGGGGAAACACTGCCCTGTAACGCCATGGTTTGAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCAGTCTTCAGGGGAAACACTGCCCTGTAACGCCATGGTTTGAA  449

seq1  CCCTGGAGAGTCCCTGGCTGTTGTTTTAAGTTCCCCAGTTGTGGTCATTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAGAGTCCCTGGCTGTTGTTTTAAGTTCCCCAGTTGTGGTCATTT  499

seq1  GTCCCAGTAGCACAGTAGCCACTGTGCCCAGAGTTTTAAGGATGGACAGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGTAGCACAGTAGCCACTGTGCCCAGAGTTTTAAGGATGGACAGA  549

seq1  GTGTGCTGACTCTAGCTTGAATGAGGAAGCCTTAGGTAGGCCCTGTGAGC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTGACTCTAGCTTGAATGAGGAAGCCTTAGGTAGGCCCTGTGAGC  599

seq1  CCAGAGAAAAATGAGATAGGAGACTTCAATTCCCTGGTGCCAGCCAGCAG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAAAAATGAGATAGGAGACTTCAATTCCCTGGTGCCAGCCAGCAG  649

seq1  GTCCTAAGATGCGGATGTCTCTCCCAACCTAGGGTACTGTTCACAGATCC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAAGATGCGGATGTCTCTCCCAACCTAGGGTACTGTTCACAGATCC  699

seq1  AAGTCTGGCAGAGGATGCAGAGAGAAGGTGCTGGTGATGGGTCAAGGAAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGGCAGAGGATGCAGAGAGAAGGTGCTGGTGATGGGTCAAGGAAG  749

seq1  CCCGTGAGGGAGAGGCTGCTGACGTGAGGCCCATTAAACACAGAACAATT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGAGGGAGAGGCTGCTGACGTGAGGCCCATTAAACACAGAACAATT  799

seq1  AAAAATGCATTCAGCTTCGATTTCCCAGAGCCATTTTCAGAATGTAAATA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCATTCAGCTTCGATTTCCCAGAGCCATTTTCAGAATGTAAATA  849

seq1  CCAGACCTGTCATTAAAAATGTATTTATTGTGATTACACAGGAGAATTC  890
      |||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  CCAGACCTGTCATTAAAAATGTATTTA-AGTGATTACACAGGAGAATTC  897