BAC Information

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BAC

Clone NameB6Ng01-174E02
Chromosome5 (Build37)
Map Location 12,239,273 - 12,399,884
singlet/doubletdoublet
Overlap geneLOC100041626, EG668059, Sema3d
Upstream geneLOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144
Downstream geneLOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717, Sema3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174E02.bB6Ng01-174E02.g
ACCGA002383GA002384
length95965
definitionB6Ng01-174E02.b B6Ng01-174E02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,399,790 - 12,399,884)(12,239,273 - 12,240,237)
sequence
gaattctcagcactgatcttaatatagacaagttatccattcatgtttaa
ggaaggaaggaagggagggagtaggaaggaagaatagagggtgtt
gaattcaccaatgtacttggagttgtaactccatactgttgggcatttta
agatctataggagctgttccttcagcaacaatgtttttgttctttgtttt
tttacaattttatgaatctaaatttaattagagtaaaatgttactattca
tcattttaatattcagcaactgagattattgttgattccaagatgttata
atttctgactgatgtcagtaccttgaattatctcaaaattaataaaaagg
aatatatacataatttcccattttaaagtggaaaagatatataaacattc
ccagaagatctggaatatttatctattcaatcacatgacactttaatttg
ggtttaatcattttagaaagtttttatttaatttttttcatggcatattt
tggcataaattgacacttgtttataaacttataaaaattagcatgttctg
gggctctgaaaacaacatataaaaggccaggctctgatgcagaaaaggaa
ccagggcaaatatgctttgtatcttctgagaaaagaataagctatcctta
ctcagtacaattgtatgtgttatttgctatctttgtagataggactgaaa
aaccacacagttgatgttttcacaaaacataatcgcttaataagttgcat
atttcaagatttattttttaaactttataattttttaaaaattggttatt
tcatttatttacatttcaaatgtttcccctccaccaactgcctatcccct
cttccctacccctctctatgagggtactcctccaaccccatccgactcat
caccctagcattcgcctattctgggtcattgagcctccacaggaacaagg
ggctcccctcccactgatgatcctctgctaaatatccagctggagccatg
gatgcccccatgtactcctttgattggtggcttagtccctggagcttggc
gggggggggggggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12399790_12399884
seq2: B6Ng01-174E02.b_43_137 (reverse)

seq1  AACACCCTCTATTCTTCCTTCCTACTCCCTCCCTTCCTTCCTTCCTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCTCTATTCTTCCTTCCTACTCCCTCCCTTCCTTCCTTCCTTAAA  50

seq1  CATGAATGGATAACTTGTCTATATTAAGATCAGTGCTGAGAATTC  95
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATGGATAACTTGTCTATATTAAGATCAGTGCTGAGAATTC  95

seq1: chr5_12239273_12240237
seq2: B6Ng01-174E02.g_63_1027

seq1  GAATTCACCAATGTACTTGGAGTTGTAACTCCATACTGTTGGGCATTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAATGTACTTGGAGTTGTAACTCCATACTGTTGGGCATTTTA  50

seq1  AGATCTATAGGAGCTGTTCCTTCAGCAACAATGTTTTTGTTCTTTGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTATAGGAGCTGTTCCTTCAGCAACAATGTTTTTGTTCTTTGTTTT  100

seq1  TTTACAATTTTATGAATCTAAATTTAATTAGAGTAAAATGTTACTATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAATTTTATGAATCTAAATTTAATTAGAGTAAAATGTTACTATTCA  150

seq1  TCATTTTAATATTCAGCAACTGAGATTATTGTTGATTCCAAGATGTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTAATATTCAGCAACTGAGATTATTGTTGATTCCAAGATGTTATA  200

seq1  ATTTCTGACTGATGTCAGTACCTTGAATTATCTCAAAATTAATAAAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGACTGATGTCAGTACCTTGAATTATCTCAAAATTAATAAAAAGG  250

seq1  AATATATACATAATTTCCCATTTTAAAGTGGAAAAGATATATAAACATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATACATAATTTCCCATTTTAAAGTGGAAAAGATATATAAACATTC  300

seq1  CCAGAAGATCTGGAATATTTATCTATTCAATCACATGACACTTTAATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGATCTGGAATATTTATCTATTCAATCACATGACACTTTAATTTG  350

seq1  GGTTTAATCATTTTAGAAAGTTTTTATTTAATTTTTTTCATGGCATATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAATCATTTTAGAAAGTTTTTATTTAATTTTTTTCATGGCATATTT  400

seq1  TGGCATAAATTGACACTTGTTTATAAACTTATAAAAATTAGCATGTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATAAATTGACACTTGTTTATAAACTTATAAAAATTAGCATGTTCTG  450

seq1  GGGCTCTGAAAACAACATATAAAAGGCCAGGCTCTGATGCAGAAAAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTGAAAACAACATATAAAAGGCCAGGCTCTGATGCAGAAAAGGAA  500

seq1  CCAGGGCAAATATGCTTTGTATCTTCTGAGAAAAGAATAAGCTATCCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCAAATATGCTTTGTATCTTCTGAGAAAAGAATAAGCTATCCTTA  550

seq1  CTCAGTACAATTGTATGTGTTATTTGCTATCTTTGTAGATAGGACTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTACAATTGTATGTGTTATTTGCTATCTTTGTAGATAGGACTGAAA  600

seq1  AACCACACAGTTGATGTTTTCACAAAACATAATCGCTTAATAAGTTGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACAGTTGATGTTTTCACAAAACATAATCGCTTAATAAGTTGCAT  650

seq1  ATTTCAAGATTTATTTTTTAAACTTTATAATTTTTTAAAAATTGGTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAGATTTATTTTTTAAACTTTATAATTTTTTAAAAATTGGTTATT  700

seq1  TCATTTATTTACATTTCAAATGTTTCCCCTCCACCAACTGCCTATCCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATTTACATTTCAAATGTTTCCCCTCCACCAACTGCCTATCCCCT  750

seq1  CTTCCCTACCCCTCTCTATGAGGGTACTCCTCCAACCCCATCCGACTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTACCCCTCTCTATGAGGGTACTCCTCCAACCCCATCCGACTCAT  800

seq1  CACCCTAGCATTCGCCTATTCTGGGTCATTGAGCCTCCACAGGAACAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTAGCATTCGCCTATTCTGGGTCATTGAGCCTCCACAGGAACAAGG  850

seq1  GGCTCCCCTCCCACTGATGATCCTCTGCTAAATATCCAGCTGGAGCCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCCTCCCACTGATGATCCTCTGCTAAATATCCAGCTGGAGCCATG  900

seq1  GATGCCCCCATGTACTCC-TTGATTGGTGGCTTAGTCCCTGGGAGCTTGG  949
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  GATGCCCCCATGTACTCCTTTGATTGGTGGCTTAGTCCCT-GGAGCTTGG  949

seq1  CGGGGGGGGGGGGGCA  965
      ||||||||||||||||
seq2  CGGGGGGGGGGGGGCA  965