BAC Information

Click to search

BAC

Clone NameB6Ng01-174L05
Chromosome2 (Build37)5 (Build37)
Map Location 61,996,421 - 61,997,50467,056,374 - 67,056,692
singlet/doubletsingletsinglet
Overlap geneSlc4a10
Upstream geneTank, Psmd14, Tbr1, LOC100039274
Downstream geneDpp4, Gcg, Fap, Ifih1, Gca, Kcnh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174L05.bB6Ng01-174L05.g
ACCGA002703GA002704
length1,093251
definitionB6Ng01-174L05.b B6Ng01-174L05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,996,421 - 61,997,504)(67,056,374 - 67,056,692)
sequence
gaattcttttatatgaaacattacaactttgattttcaaggttatttata
atgtatataataaaatatgtgtggtatagcaaataactaggctcattcaa
caagcgtgaccttcttagacctggatattttttgtgtaccatacaaaata
cctgttacatataatgtatattatcaacaatatctgtgttgataaaagtc
atttccaaatattgcatcaactatcatgctatgaaatcattacaactaaa
aataaaattcaaacactattaaaataattgcaatttaaaagcttctctct
caatgtttaaattgaaaagcattctgcttctccacacaatgaataattag
ttctgtctacctgcacttaagacaatctaggttttaccttacattcaaat
gacaaatattgtatataactcatatttaagagatgaacaaaattcatggt
tgaaaacatgaaagttaattctgcatgaatattaaattatggtgttataa
ctactgattattttactctatttctgggcattttttgaaatattgtatcc
tgtttttctaaaaatccttatgatgcatacattgcttttagtatgctaac
aattgagagaattaagttgtagaaagtcacctaaaggccttatgctaata
aagggacagacttggcattccaaccaactgcagtctgccattagttagta
taactaaacagtagactgtactatctcacccactggattaccagttcttc
tcattgaagacaacccatagaaaaggaacttctatgatacctgactagaa
gaatactgcatttaattttcttctggtcataccacagttgatagatctat
tttttttcttttcagtctctaattaattgtaattcccttaaaacagggat
tattgaaaatctgacaccaatattctctagaatgatgaatgatttgatca
aatattcttgtgtgtgagcaaatgctgctcaccatttgtagtctgcctgt
tggtatttctagagtgttaccagacagtccatttctacactataccagcc
acagcatcattacttttcattatcaacacttctaagtttctct
ttagtggagctgggtgtggtggcgcatgcctttaatcccagcactcagga
ggcagacacaggcaaatttctgagttcaaggcaagcctggtctacaaagt
gagttccaggacagccagggctatacagagaagccctgtcttgaaacccc
cccccccccaaaaaaaagaattcttagtggattaaataggaaatagtcat
tctgaatgaagaatcccatacctagaatgatgattgctgtccattttcat
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_61996421_61997504
seq2: B6Ng01-174L05.b_45_1137 (reverse)

seq1  AGAG-AACTTAG-AGTGTTGAT-ATG-AAAGTAATGATGCTGT-GCTGGT  45
      |||| ||||||| ||||||||| ||| |||||||||||||||| ||||||
seq2  AGAGAAACTTAGAAGTGTTGATAATGAAAAGTAATGATGCTGTGGCTGGT  50

seq1  ATAGTGTAGAAAT-GACTGTTCTGGT-ACACTCTAG-AATACCAACAGGC  92
      ||||||||||||| ||||| |||||| ||||||||| |||||||||||||
seq2  ATAGTGTAGAAATGGACTG-TCTGGTAACACTCTAGAAATACCAACAGGC  99

seq1  AGACCTACAAATGGTGAGCAGCATTTGCTCACACACA--GATATTTGATC  140
      ||| |||||||||||||||||||||||||||||||||   ||||||||||
seq2  AGA-CTACAAATGGTGAGCAGCATTTGCTCACACACAAGAATATTTGATC  148

seq1  AAATCATTCATCATTCTAGAGAATATTGGTGTCAGATTTTCAATAATCCC  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTCATCATTCTAGAGAATATTGGTGTCAGATTTTCAATAATCCC  198

seq1  TGTTTTAA-GGAATTACAATTAATTAGAGACTGAAAAGAAAAAAAATAGA  239
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAGGGAATTACAATTAATTAGAGACTGAAAAGAAAAAAAATAGA  248

seq1  TCTATCAACTGTGGTATGACCAGAAGAAAATTAAATGCAGTATTCTTCTA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCAACTGTGGTATGACCAGAAGAAAATTAAATGCAGTATTCTTCTA  298

seq1  GTCAGGTATCATAGAAGTTCCTTTTCTATGGGTTGTCTTCAATGAGAAGA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTATCATAGAAGTTCCTTTTCTATGGGTTGTCTTCAATGAGAAGA  348

seq1  ACTGGTAATCCAGTGGGTGAGATAGTACAGTCTACTGTTTAGTTATACTA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTAATCCAGTGGGTGAGATAGTACAGTCTACTGTTTAGTTATACTA  398

seq1  ACTAATGGCAGACTGCAGTTGGTTGGAATGCCAAGTCTGTCCCTTTATTA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGGCAGACTGCAGTTGGTTGGAATGCCAAGTCTGTCCCTTTATTA  448

seq1  GCATAAGGCCTTTAGGTGACTTTCTACAACTTAATTCTCTCAATTGTTAG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGGCCTTTAGGTGACTTTCTACAACTTAATTCTCTCAATTGTTAG  498

seq1  CATACTAAAAGCAATGTATGCATCATAAGGATTTTTAGAAAAACAGGATA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTAAAAGCAATGTATGCATCATAAGGATTTTTAGAAAAACAGGATA  548

seq1  CAATATTTCAAAAAATGCCCAGAAATAGAGTAAAATAATCAGTAGTTATA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTCAAAAAATGCCCAGAAATAGAGTAAAATAATCAGTAGTTATA  598

seq1  ACACCATAATTTAATATTCATGCAGAATTAACTTTCATGTTTTCAACCAT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATAATTTAATATTCATGCAGAATTAACTTTCATGTTTTCAACCAT  648

seq1  GAATTTTGTTCATCTCTTAAATATGAGTTATATACAATATTTGTCATTTG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTGTTCATCTCTTAAATATGAGTTATATACAATATTTGTCATTTG  698

seq1  AATGTAAGGTAAAACCTAGATTGTCTTAAGTGCAGGTAGACAGAACTAAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAGGTAAAACCTAGATTGTCTTAAGTGCAGGTAGACAGAACTAAT  748

seq1  TATTCATTGTGTGGAGAAGCAGAATGCTTTTCAATTTAAACATTGAGAGA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTGTGTGGAGAAGCAGAATGCTTTTCAATTTAAACATTGAGAGA  798

seq1  GAAGCTTTTAAATTGCAATTATTTTAATAGTGTTTGAATTTTATTTTTAG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTTTAAATTGCAATTATTTTAATAGTGTTTGAATTTTATTTTTAG  848

seq1  TTGTAATGATTTCATAGCATGATAGTTGATGCAATATTTGGAAATGACTT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATGATTTCATAGCATGATAGTTGATGCAATATTTGGAAATGACTT  898

seq1  TTATCAACACAGATATTGTTGATAATATACATTATATGTAACAGGTATTT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAACACAGATATTGTTGATAATATACATTATATGTAACAGGTATTT  948

seq1  TGTATGGTACACAAAAAATATCCAGGTCTAAGAAGGTCACGCTTGTTGAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGTACACAAAAAATATCCAGGTCTAAGAAGGTCACGCTTGTTGAA  998

seq1  TGAGCCTAGTTATTTGCTATACCACACATATTTTATTATATACATTATAA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTAGTTATTTGCTATACCACACATATTTTATTATATACATTATAA  1048

seq1  ATAACCTTGAAAATCAAAGTTGTAATGTTTCATATAAAAGAATTC  1084
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTTGAAAATCAAAGTTGTAATGTTTCATATAAAAGAATTC  1093

seq1: chr5_67056374_67056692
seq2: B6Ng01-174L05.g_80_326 (reverse)

seq1  GATGAAAATGGA-AGCAACTGACATCACAGAAACATAAAGGATCATTAAG  49
      |||||||||||| |||||    |||||        |  |||     || |
seq2  GATGAAAATGGACAGCAA---TCATCA-------TTCTAGG-----TATG  35

seq1  TGATTATTAAATGAAATTTGATAACCTAGAAGAAATTGACAAGTTCTTTG  99
       |||| || | |                  ||||  |||| | |||    
seq2  GGATTCTTCATT-----------------CAGAA--TGACTATTTC----  62

seq1  GACACAATATGTTTGCCATAATCTAGTTTGAACCAATCTAACCAATCTAT  149
                            ||| ||| | |||  ||||  |      
seq2  ----------------------CTA-TTTAATCCA--CTAAGAA------  81

seq1  CTTTCTTTTTTTTGGGGGGGGAGGGGGGTTTCGAGACAGGGTTTCTCTCT  199
        ||||||||||||||||||  |||||||||| |||||||| |||||| |
seq2  --TTCTTTTTTTTGGGGGGG--GGGGGGTTTCAAGACAGGGCTTCTCTGT  127

seq1  GTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAA  249
       |||||||||||||||||||||||||||||||||||||||| |||| |||
seq2  ATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTTGCCTTGAA  177

seq1  CTCAGAAATCTGCCTGCCTCTGCCTCCTGAGTGCTAGGATTAAAGGCATG  299
      ||||||||| ||||||  ||||||||||||||||| ||||||||||||||
seq2  CTCAGAAATTTGCCTGTGTCTGCCTCCTGAGTGCTGGGATTAAAGGCATG  227

seq1  TGCCACCACACCTGGCTCCA  319
       |||||||||||  ||||||
seq2  CGCCACCACACCCAGCTCCA  247