BAC Information

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BAC

Clone NameB6Ng01-175J03
Chromosome5 (Build37)
Map Location 12,989,464 - 13,153,080
singlet/doubletdoublet
Overlap geneLOC433845, LOC625989, LOC670717
Upstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069
Downstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175J03.bB6Ng01-175J03.g
ACCGA003339GA003340
length1,0421,144
definitionB6Ng01-175J03.b B6Ng01-175J03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,152,526 - 13,153,080)(12,989,464 - 12,990,610)
sequence
gaattctctactcttttaagatgatagtatgaaccttgaacaaatgttaa
tttagtattagaatgcaaattttcaattaagatgaacttcatacaatgtc
agagcttatcacatctgcttgtttttaataatctgatgaggaggttctgg
atgaagatagaggcagtcagttgttcctatggactgcctttgtgcaggat
ttagaagctgcagcagagcatttctgctcttggattatgggattattgtg
gtaaagttaatgggagcagcatctgacaattattctgcaaagatcctcct
gaaaccccccattccctcacatcctatatttcattctggaacatgtttca
caacataggtgggatgtgtttagaaatgttcaccaaatctccctatggca
attcagcagattaatttcaaatttcaaattttgtgtggatttttttgtgt
agttgatgtttcaatattagagtatgttatataattttcacattctacat
cctgagaaacagaatactaagttgcttcacacaccatgaaacctggggtt
gagaaatttaagcaatattgtgagatacaatgtatctttttatttgccaa
atgtaattgttgtcttaaaggcctactgctgaataaattcacctattttt
attctttataaactctggctggtacaacacagctgttctggcttaaactc
ctcaccaagctgaccaattcagtctcccctctctgggcttctcactaaat
tactctgcttgccctctaactctggcaatttgttctaatcttcaggcttc
ttcttattctctggtcccttttttcttcacttttgtctagtttgatctct
ctgcaaatgttctctgtaaaatcattcattctgctaaatctttctctaat
ttctcactatgcccctccattagaatccactttcaaatatgaccgctttc
ttctacaattaaccttacctacattgtttgggatgaaaagtgagtactat
actttagccaggagattaaaggcatgcttgtatttcagtcag

gaattcactatgtcgatccatctggcctccaacttctgagacctgggaaa
tttcagtcttgctcatacagaagatgaagataaaggtgggcatttaagac
agttaggggagctggagtgatggctcagtgggtaaaagtgtttgctgagc
aagtgtcaggccctgagaacccatgatgagcctggacatgcagcgtaaat
gttcatagtcctagtgcttctgtgtgaaggaaggtagaccagagcacatg
gccaacagcctcgtgtgtgcagccacaagcaacgccagcctagcaccaag
catggtaagtgaagacaaacatctgcactttcctctgacctccacatgtg
tgccacagcaggagtagtgcacttgaggtcacaacatgattctgaacact
catacatgtgtacacccacacacaaaacacactttttaggatacagtgtg
aagagactttggaacaatcagcaccactccatgactgctgatcaatatac
aatatgtatctttgaaaagagacttatcctaaagcaacattggaacaagt
aaatccaacttctgtaactcatggttggataaaatttcactgtattctgt
gtgctttatttgtatagatttaagacagtttgtcttactcgcagggagaa
tctgagacatcctaggaaggcattctcagcagatgccaagaaccaaaagt
tattttgtgaaaatatctgaccatggttgtgatgaagcaggaaacctttc
ttctatggtagcatagagaagccatagcaagtgtaagaaaatgaggacgg
cattcatacatgtgggactgttcttgtcagttcaaactccaaatataggc
taactaattatttctggattttgtaaaataactaaaggtgtacatttcag
tatgcatagcagcagagagagaaacttatggactgcattgttgatatcac
tgtgacccattttgttttatttatatatatatttgattatcttaaaaaca
ctttccatacatgagaagagcttgttttgattcttgcataccaattcata
agattcaaggttaaactttttgtgaaatgctttaaatatgcttttggaaa
ttatagttataatacacattacctctcaatttctccatcaaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_13152526_13153080
seq2: B6Ng01-175J03.b_46_600 (reverse)

seq1  TTCTCAACCCCAGGTTTCATGGTGTGTGAAGCAACTTAGTATTCTGTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAACCCCAGGTTTCATGGTGTGTGAAGCAACTTAGTATTCTGTTTC  50

seq1  TCAGGATGTAGAATGTGAAAATTATATAACATACTCTAATATTGAAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATGTAGAATGTGAAAATTATATAACATACTCTAATATTGAAACAT  100

seq1  CAACTACACAAAAAAATCCACACAAAATTTGAAATTTGAAATTAATCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTACACAAAAAAATCCACACAAAATTTGAAATTTGAAATTAATCTGC  150

seq1  TGAATTGCCATAGGGAGATTTGGTGAACATTTCTAAACACATCCCACCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGCCATAGGGAGATTTGGTGAACATTTCTAAACACATCCCACCTA  200

seq1  TGTTGTGAAACATGTTCCAGAATGAAATATAGGATGTGAGGGAATGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGAAACATGTTCCAGAATGAAATATAGGATGTGAGGGAATGGGGG  250

seq1  GTTTCAGGAGGATCTTTGCAGAATAATTGTCAGATGCTGCTCCCATTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGGAGGATCTTTGCAGAATAATTGTCAGATGCTGCTCCCATTAAC  300

seq1  TTTACCACAATAATCCCATAATCCAAGAGCAGAAATGCTCTGCTGCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCACAATAATCCCATAATCCAAGAGCAGAAATGCTCTGCTGCAGCT  350

seq1  TCTAAATCCTGCACAAAGGCAGTCCATAGGAACAACTGACTGCCTCTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATCCTGCACAAAGGCAGTCCATAGGAACAACTGACTGCCTCTATC  400

seq1  TTCATCCAGAACCTCCTCATCAGATTATTAAAAACAAGCAGATGTGATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCAGAACCTCCTCATCAGATTATTAAAAACAAGCAGATGTGATAA  450

seq1  GCTCTGACATTGTATGAAGTTCATCTTAATTGAAAATTTGCATTCTAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGACATTGTATGAAGTTCATCTTAATTGAAAATTTGCATTCTAATA  500

seq1  CTAAATTAACATTTGTTCAAGGTTCATACTATCATCTTAAAAGAGTAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTAACATTTGTTCAAGGTTCATACTATCATCTTAAAAGAGTAGAG  550

seq1  AATTC  555
      |||||
seq2  AATTC  555


seq1: chr5_12989464_12990610
seq2: B6Ng01-175J03.g_65_1208

seq1  GAATTCACTATGTCGATCCATCTGGCCTCCAACTTCTGAGACCTGGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTCGATCCATCTGGCCTCCAACTTCTGAGACCTGGGAAA  50

seq1  TTTCAGTCTTGCTCATACAGAAGATGAAGATAAAGGTGGGCATTTAAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTCTTGCTCATACAGAAGATGAAGATAAAGGTGGGCATTTAAGAC  100

seq1  AGTTAGGGGAGCTGGAGTGATGGCTCAGTGGGTAAAAGTGTTTGCTGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGGGAGCTGGAGTGATGGCTCAGTGGGTAAAAGTGTTTGCTGAGC  150

seq1  AAGTGTCAGGCCCTGAGAACCCATGATGAGCCTGGACATGCAGCGTAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCAGGCCCTGAGAACCCATGATGAGCCTGGACATGCAGCGTAAAT  200

seq1  GTTCATAGTCCTAGTGCTTCTGTGTGAAGGAAGGTAGACCAGAGCACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAGTCCTAGTGCTTCTGTGTGAAGGAAGGTAGACCAGAGCACATG  250

seq1  GCCAACAGCCTCGTGTGTGCAGCCACAAGCAACGCCAGCCTAGCACCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAGCCTCGTGTGTGCAGCCACAAGCAACGCCAGCCTAGCACCAAG  300

seq1  CATGGTAAGTGAAGACAAACATCTGCACTTTCCTCTGACCTCCACATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTAAGTGAAGACAAACATCTGCACTTTCCTCTGACCTCCACATGTG  350

seq1  TGCCACAGCAGGAGTAGTGCACTTGAGGTCACAACATGATTCTGAACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAGCAGGAGTAGTGCACTTGAGGTCACAACATGATTCTGAACACT  400

seq1  CATACATGTGTACACCCACACACAAAACACACTTTTTAGGATACAGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGTGTACACCCACACACAAAACACACTTTTTAGGATACAGTGTG  450

seq1  AAGAGACTTTGGAACAATCAGCACCACTCCATGACTGCTGATCAATATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACTTTGGAACAATCAGCACCACTCCATGACTGCTGATCAATATAC  500

seq1  AATATGTATCTTTGAAAAGAGACTTATCCTAAAGCAACATTGGAACAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTATCTTTGAAAAGAGACTTATCCTAAAGCAACATTGGAACAAGT  550

seq1  AAATCCAACTTCTGTAACTCATGGTTGGATAAAATTTCACTGTATTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAACTTCTGTAACTCATGGTTGGATAAAATTTCACTGTATTCTGT  600

seq1  GTGCTTTATTTGTATAGATTTAAGACAGTTTGTCTTACTCGCAGGGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTATTTGTATAGATTTAAGACAGTTTGTCTTACTCGCAGGGAGAA  650

seq1  TCTGAGACATCCTAGGAAGGCATTCTCAGCAGATGCCAAGAACCAAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGACATCCTAGGAAGGCATTCTCAGCAGATGCCAAGAACCAAAAGT  700

seq1  TATTTTGTGAAAATATCTGACCATGGTTGTGATGAAGCAGGAAACCTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTGAAAATATCTGACCATGGTTGTGATGAAGCAGGAAACCTTTC  750

seq1  TTCTATGGTAGCATAGAGAAGCCATAGCAAGTGTAAGAAAATGAGGACGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGGTAGCATAGAGAAGCCATAGCAAGTGTAAGAAAATGAGGACGG  800

seq1  CATTCATACATGTGGGACTGTTCTTGTCAGTTCAAACTCCAAATATAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATACATGTGGGACTGTTCTTGTCAGTTCAAACTCCAAATATAGGC  850

seq1  TAACTAATTATTTCTGGATTTTGTAAAATAACTAAAGGTGTACATTTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAATTATTTCTGGATTTTGTAAAATAACTAAAGGTGTACATTTCAG  900

seq1  TATGCATAGCAGGCAGAGAGAGAAACTTATGGACTGCATTGTTGATATCA  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TATGCATAGCA-GCAGAGAGAGAAACTTATGGACTGCATTGTTGATATCA  949

seq1  CTGTGACCCATTTTGTTTTATTTATATATATATTTGA-TATCTTAAAAAC  999
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTGTGACCCATTTTGTTTTATTTATATATATATTTGATTATCTTAAAAAC  999

seq1  ACTTTCCATACATGAAGAGAAGCTTG-TTTGATTCTGCAATACCAATTCA  1048
      |||||||||||||| |||  |||||| |||||||||   |||||||||||
seq2  ACTTTCCATACATG-AGAAGAGCTTGTTTTGATTCTTGCATACCAATTCA  1048

seq1  TAAGAATTCAGGTTAAAC-TTTTGTGAAATGCTTTAAATATGCTTTT-GA  1096
      ||||| |  ||||||||| |||||||||||||||||||||||||||| ||
seq2  TAAGATTCAAGGTTAAACTTTTTGTGAAATGCTTTAAATATGCTTTTGGA  1098

seq1  AATTATAG-TATAATTACACCATTTACCTCTTCATTTTTCTCCCTCCAAA  1145
      |||||||| ||||| |||||   ||||||||  |  ||||||| | ||||
seq2  AATTATAGTTATAA-TACAC--ATTACCTCTCAA--TTTCTCCAT-CAAA  1142

seq1  CC  1147
      ||
seq2  CC  1144


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