BAC Information

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BAC

Clone NameB6Ng01-175J24
Chromosome5 (Build37)
Map Location 7,144,806 - 7,280,928
singlet/doubletdoublet
Overlap geneLOC100042651
Upstream geneLOC100041208, EG435830
Downstream gene4921511H03Rik, LOC242823, LOC667767, EG546855, Steap4, Sri, LOC433840, Adam22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175J24.bB6Ng01-175J24.g
ACCGA003381GA003382
length1,147658
definitionB6Ng01-175J24.b B6Ng01-175J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,279,778 - 7,280,928)(7,144,806 - 7,145,628)
sequence
gaattctcctctacaggtcacggaccaagctctcacaaccaatgatagat
gattcgtctttgctcatacatttatttaccttcttgggccctgaaaaggg
ctttctgctggtcagtttcattggatcaccctttcttacctgcttaaatt
ctcacaaaccacactcatctctcctgtgttgcacataggccatgttagcc
cacatgggacatcccttctaataattctccttactcttttccagctctga
tttaccataaaaaccacttcttaaaatgtaggcactttccttggtctctt
ggtttccagacctgacctcagcatccttacagaggcccttttctgtcttg
ttccgactctgatgttgcccatagtatcacatagtatgcatattgtatca
cattctgtatcacattggcattctcttcaccctacctcaacactcctggt
caaagcttccctcttgcacaaatgacctcctcaccttgtacaaattattg
acttcccatgtgaagcagtggcactgttgagggttttcttccttacacat
agggttcaactccctgtgatgttctctttgtgttggtgtctccttttggg
ttgcttgactgttctcaagggcctgctctttgcattaacttggaactgcc
ccacctaatgacattatgagtgacttatccacaaaaggttaggtggggca
gtccccccaattttcactttccctttagtagataagtcacttataatgcc
tgtaagagaaaaaggcagaaaaactattagtgattttttttttttactat
tttaattgatttcattataattgtattgtaaaaataatctttttattata
gtatcattttagattagagaaaatttgcaaagacaacaccaagtttctga
tataactgtacccagcttacctgctgttattttctacattcactaagtac
gtttgtcataaataatgaaaccatcaaatttacctcattgattaagattt
ctagcacacttggcaagaaattttattcattgacttacatttatcgttat
ctcgatacattcccttcactctgacttaattactattccaaatagaggaa
agtaatgcaagctgattgttttgaaaatccctcagcagattatctcc

gaattcacagtggctgagctcacgtgcacaagactgtgcaaattcaagcc
agccaaaactccagcatgaaagtgggggagatcacaaaccccaacttctg
acttgatgattgctacaaaacaaagagtccattttctttaggaactgggg
ggttgtgagactatatatgctcctatagattgccctatacctgtgcatat
actggcagtatgggctcaatgaagtctttaaatgaatacaagaaaatgag
atgacatagtggtagttgtggagttaagggaagaattaggggttagaatc
ggaacttgataaagacattataatcatgaatgaaattttcaaacaatgaa
agaaaggtatatcaaaattttgtgctagttcttcctgacatcagaccatt
cttccagaaaataagatctaagcatatactagggagtgagaaaaatcagt
agtgattagggggtctgtgggttagggggcttgttgttgttgtgaagagc
tgttattgtttcatttgctttatttttttgacaaatgtcttgctttattt
ccttggcaatcttgcaacacatgtagatcagaattaccctcatgttggct
gtcatccacctctttcttaagagcgctaggattattgtgtggtaatcagt
ttagaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_7279778_7280928
seq2: B6Ng01-175J24.b_49_1195 (reverse)

seq1  GGAGAAAATCTGCTGGGGGAATTTTCAACA-TATCAGCTTTTTCA-TAAT  48
      ||||| ||||||||| ||| |||||||| |  ||||||  || || || |
seq2  GGAGATAATCTGCTGAGGG-ATTTTCAAAACAATCAGC--TTGCATTACT  47

seq1  TTTCTCTATTT-GAATAGTAATTAAGGTCAAGAGTGAAGGGAATGTATCG  97
      || |||||||| ||||||||||||| ||| ||||||||||||||||||||
seq2  TTCCTCTATTTGGAATAGTAATTAA-GTC-AGAGTGAAGGGAATGTATCG  95

seq1  AAGATAAAGGATAAATTGTAAAGTTCAAATGAAT-AAATTTCTT-CCAAG  145
       |||| || |||||| ||| ||||   ||||||| ||||||||| |||||
seq2  -AGAT-AACGATAAA-TGT-AAGT--CAATGAATAAAATTTCTTGCCAAG  139

seq1  TGTTGCTAGAAATCTTAATCAATGAGGTAATTTTGATGG-TTCATTATTT  194
      || ||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  TG-TGCTAGAAATCTTAATCAATGAGGTAAATTTGATGGTTTCATTATTT  188

seq1  ATGACAAACGTACTTAGTGAATGTAAGAAAATAACAGCAGGTAAGCTGGG  244
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATGACAAACGTACTTAGTGAATGT-AGAAAATAACAGCAGGTAAGCTGGG  237

seq1  TACAGTTATATCAG-AACTTGGTGTTGTCTTTGCAAATTTTCTCTAAATC  293
      |||||||||||||| |||||||||||||||||||||||||||||| ||||
seq2  TACAGTTATATCAGAAACTTGGTGTTGTCTTTGCAAATTTTCTCT-AATC  286

seq1  TAAAATGATACTATAAT-AAAAGATTATTTTTACAATACAATTATAATGA  342
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAAAATGATACTATAATAAAAAGATTATTTTTACAATACAATTATAATGA  336

seq1  AATCAATTAAAATAGT--AAAAAAAAAATCACTAATAGTTTTTCTGCCTT  390
      ||||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  AATCAATTAAAATAGTAAAAAAAAAAAATCACTAATAGTTTTTCTGCCTT  386

seq1  TTTCTCTTACAGGCATTATAAGTGACTTATCTACTAAAGGGAAAGTGAAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTACAGGCATTATAAGTGACTTATCTACTAAAGGGAAAGTGAAA  436

seq1  ATTGGGGGGACTGCCCCACCTAACCTTTTGTGGATAAGTCACTCATAATG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGGGACTGCCCCACCTAACCTTTTGTGGATAAGTCACTCATAATG  486

seq1  TCATTAGGTGGGGCAGTTCCAAGTTAATGCAAAGAGCAGGCCCTTGAGAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGGTGGGGCAGTTCCAAGTTAATGCAAAGAGCAGGCCCTTGAGAA  536

seq1  CAGTCAAGCAACCCAAAAGGAGACACCAACACAAAGAGAACATCACAGGG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAGCAACCCAAAAGGAGACACCAACACAAAGAGAACATCACAGGG  586

seq1  AGTTGAACCCTATGTGTAAGGAAGAAAACCCTCAACAGTGCCACTGCTTC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAACCCTATGTGTAAGGAAGAAAACCCTCAACAGTGCCACTGCTTC  636

seq1  ACATGGGAAGTCAATAATTTGTACAAGGTGAGGAGGTCATTTGTGCAAGA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGAAGTCAATAATTTGTACAAGGTGAGGAGGTCATTTGTGCAAGA  686

seq1  GGGAAGCTTTGACCAGGAGTGTTGAGGTAGGGTGAAGAGAATGCCAATGT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCTTTGACCAGGAGTGTTGAGGTAGGGTGAAGAGAATGCCAATGT  736

seq1  GATACAGAATGTGATACAATATGCATACTATGTGATACTATGGGCAACAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGAATGTGATACAATATGCATACTATGTGATACTATGGGCAACAT  786

seq1  CAGAGTCGGAACAAGACAGAAAAGGGCCTCTGTAAGGATGCTGAGGTCAG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCGGAACAAGACAGAAAAGGGCCTCTGTAAGGATGCTGAGGTCAG  836

seq1  GTCTGGAAACCAAGAGACCAAGGAAAGTGCCTACATTTTAAGAAGTGGTT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAAACCAAGAGACCAAGGAAAGTGCCTACATTTTAAGAAGTGGTT  886

seq1  TTTATGGTAAATCAGAGCTGGAAAAGAGTAAGGAGAATTATTAGAAGGGA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGTAAATCAGAGCTGGAAAAGAGTAAGGAGAATTATTAGAAGGGA  936

seq1  TGTCCCATGTGGGCTAACATGGCCTATGTGCAACACAGGAGAGATGAGTG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCATGTGGGCTAACATGGCCTATGTGCAACACAGGAGAGATGAGTG  986

seq1  TGGTTTGTGAGAATTTAAGCAGGTAAGAAAGGGTGATCCAATGAAACTGA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGTGAGAATTTAAGCAGGTAAGAAAGGGTGATCCAATGAAACTGA  1036

seq1  CCAGCAGAAAGCCCTTTTCAGGGCCCAAGAAGGTAAATAAATGTATGAGC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGAAAGCCCTTTTCAGGGCCCAAGAAGGTAAATAAATGTATGAGC  1086

seq1  AAAGACGAATCATCTATCATTGGTTGTGAGAGCTTGGTCCGTGACCTGTA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACGAATCATCTATCATTGGTTGTGAGAGCTTGGTCCGTGACCTGTA  1136

seq1  GAGGAGAATTC  1151
      |||||||||||
seq2  GAGGAGAATTC  1147


seq1: chr5_7144806_7145628
seq2: B6Ng01-175J24.g_65_722

seq1  GAATTCACAGTGGCTGAGCTCACGTGCACAAGACTGTGCAAATTCAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTGGCTGAGCTCACGTGCACAAGACTGTGCAAATTCAAGCC  50

seq1  AGCCAAAACTCCAGCATGAAAGTGGGGGAGATCACAAACCCCAACTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAACTCCAGCATGAAAGTGGGGGAGATCACAAACCCCAACTTCTG  100

seq1  ACTTGATGATTGCTACAAAACAAAGAGTCCATTTTCTTTAGGAACTGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATGATTGCTACAAAACAAAGAGTCCATTTTCTTTAGGAACTGGGG  150

seq1  GGTTGTGAGACTATATATGCTCCTATAGATTGCCCTATACCTGTGCATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGAGACTATATATGCTCCTATAGATTGCCCTATACCTGTGCATAT  200

seq1  ACTGGCAGTATGGGCTCAATGAAGTCTTTAAATGAATACAAGAAAATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCAGTATGGGCTCAATGAAGTCTTTAAATGAATACAAGAAAATGAG  250

seq1  ATGACATAGTGGTAGTTGTGGAGTTAAGGGAAGAATTAGGGGTTAGAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATAGTGGTAGTTGTGGAGTTAAGGGAAGAATTAGGGGTTAGAATC  300

seq1  GGAACTTGATAAAGACATTATAATCATGAATGAAATTTTCAAACAATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTGATAAAGACATTATAATCATGAATGAAATTTTCAAACAATGAA  350

seq1  AGAAAGGTATATCAAAATTTTGTGCTAGTTCTTCCTGACATCAGACCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTATATCAAAATTTTGTGCTAGTTCTTCCTGACATCAGACCATT  400

seq1  CTTCCAGAAAATAAGATCTAAGCATATACTAGGGAGTGAGAAAAATCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGAAAATAAGATCTAAGCATATACTAGGGAGTGAGAAAAATCAGT  450

seq1  AGTGATTAGGGGGTCTGTGGGTTAGGGGGCTTGTTGTTGTTGTGAAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTAGGGGGTCTGTGGGTTAGGGGGCTTGTTGTTGTTGTGAAGAGC  500

seq1  TGTTATTG-TTCATTTGCTTTA-GTTTTTGACAAATGTCTTGCTTTA-TT  547
      |||||||| |||||||||||||  ||||||||||||||||||||||| ||
seq2  TGTTATTGTTTCATTTGCTTTATTTTTTTGACAAATGTCTTGCTTTATTT  550

seq1  CCTTGGCAATCCTGCAACACATGTAGAACAG-ACTACCCTCATGTTGGCT  596
      ||||||||||| ||||||||||||||| ||| | ||||||||||||||||
seq2  CCTTGGCAATCTTGCAACACATGTAGATCAGAATTACCCTCATGTTGGCT  600

seq1  GTCATCCACCTCTTTCTTAAGAGCGCTAGGATTATTGTGTGGTAATCAGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCCACCTCTTTCTTAAGAGCGCTAGGATTATTGTGTGGTAATCAGT  650

seq1  TTTGAATAAATGTAGTATTCTTTGAAGCTTCTATAGTTTTTCACTCTTTA  696
      || |||||                                          
seq2  TTAGAATA------------------------------------------  658

seq1  AATTTTTCTTTATTCAGATTAAAGTAGTTTCTTTTAAAATTTTAAAGTAA  746
                                                        
seq2  --------------------------------------------------  658

seq1  CGTTACTTCTTATATCCTCAGATTTGTAAGACAAATTACCGGGGCTCTAT  796
                                                        
seq2  --------------------------------------------------  658

seq1  TGGTTTCTTAATTTCTCAGTTAGAATA  823
                                 
seq2  ---------------------------  658


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