BAC Information

Click to search

BAC

Clone NameB6Ng01-175L13
Chromosome5 (Build37)
Map Location 96,267,734 - 96,409,153
singlet/doubletdoublet
Overlap geneLOC433921, Cxcl13, EG666231
Upstream geneLOC100041179, LOC624655, LOC100041166, LOC665469, LOC622894, EG666121, LOC666125, EG666133, LOC100041296, LOC100041253, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943
Downstream geneCnot6l, LOC100040559, Mrpl1, Fras1, Anxa3, EG666266
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175L13.bB6Ng01-175L13.g
ACCGA003451GA003452
length9881,064
definitionB6Ng01-175L13.b B6Ng01-175L13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,267,734 - 96,268,714)(96,408,092 - 96,409,153)
sequence
gaattccaagtcgcagaaatcatcctgccttggccttcctgctgggagga
ctactatgtgaaccaagtcacctgactgtgttttcttcatttgtgactag
cattgtacagaaggtaagtcacctgggagtcttaactgctcgtgaaaata
catggacaaaatcataaaatgccattgtaacaggacatgataaacacctt
ttacaattatttgtctgttatggaataaagaactgagcttcctgctttgc
caatcttctcctgaacggcactcagaaggctgaggctgaaggataaattg
catccattttggcagggatttctgtggagtaactcagggagtaaagttct
tggttggcattcacattttaagttatacatgactgcatgatctagacaga
tggaggaacgcctgtctttctagaacatgtgagtctgagtagagcgtcag
aaatccaatgtcatctttggctataatagaaagtgtgaggcaagtctggt
ctgtactaaaatattctcaaaacaacttaaaaagtgtgtcagggagggac
atgcaatccatgattctaagaaagttggaggtggtttcagaatgcaagga
tcattggacatggaaagatgcttagtgtttactgggcatagagaaaatct
ctaggattaggagagaaccctgatatttgcagaatacctaaattcaatgc
ccagcaggtgtggtggtggtggtagtggcttgaaaccatctgtatcttca
gtgctctttctttcctggatttaataagcacagtgctcatgcacacagac
acgcacatacacaaagagaaagacagagatggagacagagacctcatctt
atcaaatcccttccctcaagactcagggaatcctgtagaaaagaacaaag
aagggtgattagagccagatgggatagtggaccaccaaaggcaggtcagg
ccttcttaaaccacagggagcatctaatacacacatga
gaattcaattcctaaaggtaaaattggggacattttaaactacgtttgga
cgcctgcaatatcgccagtctttttgaggataattcattcattcccaaaa
gaaatttttctaagtaaagaataatgaacatttcccgaggaacacagtgt
gccaagaattttccgggtgtttccatttttcttgatgccccttgaaagct
ctaggaatcagagactattgccactgttttgtaggtaagggcagtgagac
acgaagagttttgataatataaggtagaccagaccgtaatgcagttaaaa
agcagaattgaaatccaatcccatttttctccttacagatagtgccaatt
tttctcttgatgactatatcccactttggggacagtccctatggaagctg
tgaattcttgcatcttttttatcacattatgtactctgtctttgggaact
tcctcagcatatatacagagcagaagatgctaaaatctccagagggtata
atgctgtaggcatgtggggactgtgggggccagagatggatgggtttgaa
agttgtacaaaaatgctctgcagtgggaaaaccctgacccatgtccagcc
tagtctctgagcaagcccacagagttttcagctgggttgcagtcttgttt
tggtcctatattttcttaccatgcctcctttcctcgcttttggaatggtt
ttatttatttctctgccactgtgttttagaaatatgtaaattgctttttt
atttcatagtgggttcagttaagaactcttcttgagtttcagaagagact
ttcgactttcaagcagtcttgagactgtgaaagactatggagacttttga
agatagattaattaatgcatttggcattattgtatagctacatgcctgtg
ggggccagggagtggaattgtggtggcttgaatcagaatggtcccttagc
tcatatatttgaaagcttggtctttagttggtgaaacttgttttggggaa
gaattgggagtgttgccttttgttagaggagtgtgttaactggggggtgg
gtcctgagttcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_96267734_96268714
seq2: B6Ng01-175L13.b_49_1036

seq1  GAATTCCAAGTCGCAGAAATCATCCTGCCTTGGCCTTCCTGCTGGGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTCGCAGAAATCATCCTGCCTTGGCCTTCCTGCTGGGAGGA  50

seq1  CTACTATGTGAACCAAGTCACCTGACTGTGTTTTCTTCATTTGTGACTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTATGTGAACCAAGTCACCTGACTGTGTTTTCTTCATTTGTGACTAG  100

seq1  CATTGTACAGAAGGTAAGTCACCTGGGAGTCTTAACTGCTCGTGAAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTACAGAAGGTAAGTCACCTGGGAGTCTTAACTGCTCGTGAAAATA  150

seq1  CATGGACAAAATCATAAAATGCCATTGTAACAGGACATGATAAACACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACAAAATCATAAAATGCCATTGTAACAGGACATGATAAACACCTT  200

seq1  TTACAATTATTTGTCTGTTATGGAATAAAGAACTGAGCTTCCTGCTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATTATTTGTCTGTTATGGAATAAAGAACTGAGCTTCCTGCTTTGC  250

seq1  CAATCTTCTCCTGAACGGCACTCAGAAGGCTGAGGCTGAAGGATAAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTCTCCTGAACGGCACTCAGAAGGCTGAGGCTGAAGGATAAATTG  300

seq1  CATCCATTTTGGCAGGGATTTCTGTGGAGTAACTCAGGGAGTAAAGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATTTTGGCAGGGATTTCTGTGGAGTAACTCAGGGAGTAAAGTTCT  350

seq1  TGGTTGGCATTCACATTTTAAGTTATACATGACTGCATGATCTAGACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGCATTCACATTTTAAGTTATACATGACTGCATGATCTAGACAGA  400

seq1  TGGAGGAACGCCTGTCTTTCTAGAACATGTGAGTCTGAGTAGAGCGTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAACGCCTGTCTTTCTAGAACATGTGAGTCTGAGTAGAGCGTCAG  450

seq1  AAATCCAATGTCATCTTTGGCTATAATAGAAAGTGTGAGGCAAGTCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAATGTCATCTTTGGCTATAATAGAAAGTGTGAGGCAAGTCTGGT  500

seq1  CTGTACTAAAATATTCTCAAAACAACTTAAAAAGTGTGTCAGGGAGGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTAAAATATTCTCAAAACAACTTAAAAAGTGTGTCAGGGAGGGAC  550

seq1  ATGCAATCCATGATTCTAAGAAAGTTGGAGGTGGTTTCAGAATGCAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATCCATGATTCTAAGAAAGTTGGAGGTGGTTTCAGAATGCAAGGA  600

seq1  TCATTGGACATGGAAAGATGCTTAGTGTTTACTGGGCATAGAGAAAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGACATGGAAAGATGCTTAGTGTTTACTGGGCATAGAGAAAATCT  650

seq1  CTAGGATTAGGAGAGAACCCTGATATTTGCAGAATACCTAAATTCAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATTAGGAGAGAACCCTGATATTTGCAGAATACCTAAATTCAATGC  700

seq1  CCAGCAGGTGTGGTGGTGGTGGTAGTGGCTTGAAACCATCTGTATCTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGGTGTGGTGGTGGTGGTAGTGGCTTGAAACCATCTGTATCTTCA  750

seq1  GTGCTCTTTCTTTCCTGGATTTAATAAGCACAGTGCTCATGCACACAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTTTCTTTCCTGGATTTAATAAGCACAGTGCTCATGCACACAGAC  800

seq1  ACGCACATACACAAAGAGAAAGACAGAGATGGAGACAGAGACCTCATCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCACATACACAAAGAGAAAGACAGAGATGGAGACAGAGACCTCATCTT  850

seq1  ATCAAAT-CCTTCCCTCAAGACTCAGGGAATCCTGTAGAAAAGAACAAAG  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATCCCTTCCCTCAAGACTCAGGGAATCCTGTAGAAAAGAACAAAG  900

seq1  AAGGGGTGA-TAGAGCCAGAGGGGATAGTGGA-CACC-AAGGCA-GTCAG  945
      || |||||| |||||||||| ||||||||||| |||| |||||| |||||
seq2  AA-GGGTGATTAGAGCCAGATGGGATAGTGGACCACCAAAGGCAGGTCAG  949

seq1  GCCTTCTTAAA-CACA-GGAGCA-CTAATACACACATGA  981
      ||||||||||| |||| |||||| |||||||||||||||
seq2  GCCTTCTTAAACCACAGGGAGCATCTAATACACACATGA  988

seq1: chr5_96408092_96409153
seq2: B6Ng01-175L13.g_66_1129 (reverse)

seq1  TTTGAAACCTCAGGGCCCA-CCCCCAG-TAACACACTTCCTCTAAC-AAA  47
      ||||||  |||||| |||| ||||||| |||||||| ||||||||| |||
seq2  TTTGAA--CTCAGGACCCACCCCCCAGTTAACACAC-TCCTCTAACAAAA  47

seq1  GGCACACCTCCCAATTCTT-CCCAAAAC-AGTTCCACCAACTAAGGACCA  95
      ||||   |||||||||||| |||||||| |||| |||||||||| |||||
seq2  GGCAACACTCCCAATTCTTCCCCAAAACAAGTTTCACCAACTAAAGACCA  97

seq1  AGCTTTCAAATATATGAGCCTAAGGGACCATTCTGATTCAAGCCACCAC-  144
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  AGCTTTCAAATATATGAG-CTAAGGGACCATTCTGATTCAAGCCACCACA  146

seq1  ATTCCACTCCCTGGCCCCCACAGGCATGTAGCTATACAATAATGCCAAAT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACTCCCTGGCCCCCACAGGCATGTAGCTATACAATAATGCCAAAT  196

seq1  GCATTAATTAATCTATCTTCAAAAGTCTCCATAGTCTTTCACAGTCTCAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAATTAATCTATCTTCAAAAGTCTCCATAGTCTTTCACAGTCTCAA  246

seq1  GACTGCTTGAAAGTCGAAAGTCTCTTCTGAAACTCAAGAAGAGTTCTTAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTTGAAAGTCGAAAGTCTCTTCTGAAACTCAAGAAGAGTTCTTAA  296

seq1  CTGAACCCACTATGAAATAAAAAAGCAATTTACATATTTCTAAAACACAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCCACTATGAAATAAAAAAGCAATTTACATATTTCTAAAACACAG  346

seq1  TGGCAGAGAAATAAATAAAACCATTCCAAAAGCGAGGAAAGGAGGCATGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAGAAATAAATAAAACCATTCCAAAAGCGAGGAAAGGAGGCATGG  396

seq1  TAAGAAAATATAGGACCAAAACAAGACTGCAACCCAGCTGAAAACTCTGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAATATAGGACCAAAACAAGACTGCAACCCAGCTGAAAACTCTGT  446

seq1  GGGCTTGCTCAGAGACTAGGCTGGACATGGGTCAGGGTTTTCCCACTGCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGCTCAGAGACTAGGCTGGACATGGGTCAGGGTTTTCCCACTGCA  496

seq1  GAGCATTTTTGTACAACTTTCAAACCCATCCATCTCTGGCCCCCACAGTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTTTTGTACAACTTTCAAACCCATCCATCTCTGGCCCCCACAGTC  546

seq1  CCCACATGCCTACAGCATTATACCCTCTGGAGATTTTAGCATCTTCTGCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATGCCTACAGCATTATACCCTCTGGAGATTTTAGCATCTTCTGCT  596

seq1  CTGTATATATGCTGAGGAAGTTCCCAAAGACAGAGTACATAATGTGATAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATATATGCTGAGGAAGTTCCCAAAGACAGAGTACATAATGTGATAA  646

seq1  AAAAGATGCAAGAATTCACAGCTTCCATAGGGACTGTCCCCAAAGTGGGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGCAAGAATTCACAGCTTCCATAGGGACTGTCCCCAAAGTGGGA  696

seq1  TATAGTCATCAAGAGAAAAATTGGCACTATCTGTAAGGAGAAAAATGGGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCATCAAGAGAAAAATTGGCACTATCTGTAAGGAGAAAAATGGGA  746

seq1  TTGGATTTCAATTCTGCTTTTTAACTGCATTACGGTCTGGTCTACCTTAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTTCAATTCTGCTTTTTAACTGCATTACGGTCTGGTCTACCTTAT  796

seq1  ATTATCAAAACTCTTCGTGTCTCACTGCCCTTACCTACAAAACAGTGGCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAAAACTCTTCGTGTCTCACTGCCCTTACCTACAAAACAGTGGCA  846

seq1  ATAGTCTCTGATTCCTAGAGCTTTCAAGGGGCATCAAGAAAAATGGAAAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTCTGATTCCTAGAGCTTTCAAGGGGCATCAAGAAAAATGGAAAC  896

seq1  ACCCGGAAAATTCTTGGCACACTGTGTTCCTCGGGAAATGTTCATTATTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGAAAATTCTTGGCACACTGTGTTCCTCGGGAAATGTTCATTATTC  946

seq1  TTTACTTAGAAAAATTTCTTTTGGGAATGAATGAATTATCCTCAAAAAGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTAGAAAAATTTCTTTTGGGAATGAATGAATTATCCTCAAAAAGA  996

seq1  CTGGCGATATTGCAGGCGTCCAAACGTAGTTTAAAATGTCCCCAATTTTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGATATTGCAGGCGTCCAAACGTAGTTTAAAATGTCCCCAATTTTA  1046

seq1  CCTTTAGGAATTGAATTC  1062
      ||||||||||||||||||
seq2  CCTTTAGGAATTGAATTC  1064