BAC Information

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BAC

Clone NameB6Ng01-175N13
Chromosome5 (Build37)
Map Location 82,147,024 - 82,148,219
singlet/doubletsinglet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175N13.bB6Ng01-175N13.g
ACCGA003542GA003543
length1,196641
definitionB6Ng01-175N13.b B6Ng01-175N13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttctatttattacctttgcataatgaacagaaataatgcaat
ttcatgtatagatccttctttatacaaaaataagcatggaaaataaagac
ttagatgagaaacttgctgaagggatcataactcagtgaatgttgctgca
aagaatactcaggggacttataaaacatagaaacaagacagacaaagaaa
attcttgaagaaaaccgtcttcctatgagaagatgggaagacagtctctg
aggagcatgataaaatactcaacaagatacagtttcaggaacttcaataa
ttcttttctcacttgttagaaatttttacgtaaacatcatttttctcttt
tctccgacgtttctattcatacgggaagtgacagatattttcataagagt
tacagaaaatttatgatttttcttttaatttgatctcacccaatctgctt
ctaaatgtcagaaaggacagctcggcgagaatgaaaggatgaaaaaggat
agctcagatgatgtctaggagtctatgaacagcactctgaccatgcatag
ctcaaatatgtcaacacatgcaaacatccaaagaatgtaagtctgcagac
atgaaacacggagatgagacgtttgcctcatggttttaaaaagaactcaa
tctggagtacagtaacacttggtatgagtgtcttgaaagtaccaagttat
taacacagtatatagatttttcagtactcttcactgaggtgacaccctct
tcctacatgagttagacactgaattactttgattctctccagtttcttct
ttaaagaaacatttttaagacgtgtatccctgcatcattctagcatatgt
gaacaatgagacagtaagtattaagaacctgttttacattctacgcacag
ttacattttagtattataaaactgccttttcaacctagtttgttctgaaa
tattcagaatactgctaaatgtgatcttttttcaacaaataaggacattt
actttcatgtcttcatcatagatgaacatgggttggaaactgtaaggcgg
cactgaagttctatagaattccaaaaaactctatttttcctgaataatgt
agtttggagtcttcctaaggttctgattgctctacattttggaaacagtc
agcaggcacgatgttcacctccaagcttaatgggagacacaaaggg

gaattccctgtcttccttctatcaaagctgacactcccgtccccactcct
actgccatacctattcccatgaatgcagccagggttaaagtaattggttc
tctttttgaccgccggcccgcatagctttcttctaaactggatgcagggt
gataatatacacggggtaacagctggatcatgacacaaaaatcatgagat
gaattaaaaaccttagttgatacacagggagtaagtcctgtattgcaagc
ccaccatccaaccggggaaggtacaagatagtaatcagcttccgttctgg
acacggactgaatttgtccgcataggtgtttgtgagtggaaggtggggta
cctatacagagacctggattcctcgcggatacttcagtcagggtcagttt
ttgtcctgtaccccaagagcaggaagtatggctgctggttctgttgaaat
ctccattgaaggcgattccttcataataaggcggacccgaggacaggcat
agccagcagtcctcagtagcgcttggatcagttctgttaagggcataaaa
ggctcctctcactaggttaaacatcctctgtcttgaaggaatctcggggg
taatagttagaggtacctgaggagtgggaggttgggtgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82147024_82148219
seq2: B6Ng01-175N13.b_46_1241 (reverse)

seq1  CCCTT--TGTCTCCCA-TAAGCCTGTGAGGTGACCTTCGTGCTTGCTGAC  47
      |||||  ||||||||| ||||| || ||||||| | |||||| |||||||
seq2  CCCTTTGTGTCTCCCATTAAGCTTG-GAGGTGAACATCGTGCCTGCTGAC  49

seq1  TTGTTTCCCAAAATGTAGAGACATTCCAGGAACTTAGG-AGACTCCAAAC  96
       ||||| |||||||||||||  ||  ||| | |||||| |||||||||||
seq2  -TGTTT-CCAAAATGTAGAGCAAT--CAGAACCTTAGGAAGACTCCAAAC  95

seq1  TACATTTATCAG--AAAATAGAGTTTTTTGGAATTCTATAG-ACTTCAGT  143
      ||||||  ||||  ||||||||||||||||||||||||||| ||||||||
seq2  TACATTATTCAGGAAAAATAGAGTTTTTTGGAATTCTATAGAACTTCAGT  145

seq1  GCCGCC-TACAG-TTCCAACCCATGTTTCATCTTATGATGAAGACATGAG  191
      |||||| ||||| |||||||||||| |||||| |||||||||||||||| 
seq2  GCCGCCTTACAGTTTCCAACCCATG-TTCATC-TATGATGAAGACATGA-  192

seq1  AAGTAAATGTCCTTATTTGTTGAAAAAAGATCACATTTTAGCAGTATTCT  241
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAGTAAATGTCCTTATTTGTTGAAAAAAGATCACA-TTTAGCAGTATTCT  241

seq1  GAATATTTCAGAACAAACTAGGTTGAAAAGGCAGTTTTATAATACTAAAA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTCAGAACAAACTAGGTTGAAAAGGCAGTTTTATAATACTAAAA  291

seq1  TGTAACTGTGCGTAGAATGTAAAACAGGTTCTTAATACTTACTGTCTCAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTGTGCGTAGAATGTAAAACAGGTTCTTAATACTTACTGTCTCAT  341

seq1  TGTTCACATATGCTAGAATGATGCAGGGATACACGTCTTAAAAATGTTTC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACATATGCTAGAATGATGCAGGGATACACGTCTTAAAAATGTTTC  391

seq1  TTTAAAGAAGAAACTGGAGAGAATCAAAGTAATTCAGTGTCTAACTCATG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGAAGAAACTGGAGAGAATCAAAGTAATTCAGTGTCTAACTCATG  441

seq1  TAGGAAGAGGGTGTCACCTCAGTGAAGAGTACTGAAAAATCTATATACTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGAGGGTGTCACCTCAGTGAAGAGTACTGAAAAATCTATATACTG  491

seq1  TGTTAATAACTTGGTACTTTCAAGACACTCATACCAAGTGTTACTGTACT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATAACTTGGTACTTTCAAGACACTCATACCAAGTGTTACTGTACT  541

seq1  CCAGATTGAGTTCTTTTTAAAACCATGAGGCAAACGTCTCATCTCCGTGT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTGAGTTCTTTTTAAAACCATGAGGCAAACGTCTCATCTCCGTGT  591

seq1  TTCATGTCTGCAGACTTACATTCTTTGGATGTTTGCATGTGTTGACATAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTCTGCAGACTTACATTCTTTGGATGTTTGCATGTGTTGACATAT  641

seq1  TTGAGCTATGCATGGTCAGAGTGCTGTTCATAGACTCCTAGACATCATCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTATGCATGGTCAGAGTGCTGTTCATAGACTCCTAGACATCATCT  691

seq1  GAGCTATCCTTTTTCATCCTTTCATTCTCGCCGAGCTGTCCTTTCTGACA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATCCTTTTTCATCCTTTCATTCTCGCCGAGCTGTCCTTTCTGACA  741

seq1  TTTAGAAGCAGATTGGGTGAGATCAAATTAAAAGAAAAATCATAAATTTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAGCAGATTGGGTGAGATCAAATTAAAAGAAAAATCATAAATTTT  791

seq1  CTGTAACTCTTATGAAAATATCTGTCACTTCCCGTATGAATAGAAACGTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACTCTTATGAAAATATCTGTCACTTCCCGTATGAATAGAAACGTC  841

seq1  GGAGAAAAGAGAAAAATGATGTTTACGTAAAAATTTCTAACAAGTGAGAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAAGAGAAAAATGATGTTTACGTAAAAATTTCTAACAAGTGAGAA  891

seq1  AAGAATTATTGAAGTTCCTGAAACTGTATCTTGTTGAGTATTTTATCATG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTATTGAAGTTCCTGAAACTGTATCTTGTTGAGTATTTTATCATG  941

seq1  CTCCTCAGAGACTGTCTTCCCATCTTCTCATAGGAAGACGGTTTTCTTCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGAGACTGTCTTCCCATCTTCTCATAGGAAGACGGTTTTCTTCA  991

seq1  AGAATTTTCTTTGTCTGTCTTGTTTCTATGTTTTATAAGTCCCCTGAGTA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTCTTTGTCTGTCTTGTTTCTATGTTTTATAAGTCCCCTGAGTA  1041

seq1  TTCTTTGCAGCAACATTCACTGAGTTATGATCCCTTCAGCAAGTTTCTCA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGCAGCAACATTCACTGAGTTATGATCCCTTCAGCAAGTTTCTCA  1091

seq1  TCTAAGTCTTTATTTTCCATGCTTATTTTTGTATAAAGAAGGATCTATAC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTCTTTATTTTCCATGCTTATTTTTGTATAAAGAAGGATCTATAC  1141

seq1  ATGAAATTGCATTATTTCTGTTCATTATGCAAAGGTAATAAATAGAAATG  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTGCATTATTTCTGTTCATTATGCAAAGGTAATAAATAGAAATG  1191

seq1  AATTC  1196
      |||||
seq2  AATTC  1196


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