BAC Information

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BAC

Clone NameB6Ng01-176B15
Chromosome5 (Build37)
Map Location 48,505,758 - 48,653,267
singlet/doubletdoublet
Overlap geneSlit2
Upstream geneLOC100040865, LOC100040876
Downstream gene4933428G09Rik, Kcnip4, LOC100041668
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176B15.bB6Ng01-176B15.g
ACCGA003729GA003730
length1,1541,108
definitionB6Ng01-176B15.b B6Ng01-176B15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,505,758 - 48,506,915)(48,652,170 - 48,653,267)
sequence
gaattctccaacacagtaggaatgacctcaaccacagtcagtgaattctt
aggggctgcagtagggaggaggagaactgtcaccattcagagccatgtgt
tgaatttgatctgtgagttaatagcaggcaggctgaaagaagtttcaggg
aaaaaaaaatctgtgtgaatttataaccattaaagaaaatagtttcacaa
aattattgcataagccccatttcacgatagcatttattattaaaaggcga
tgtctctcactcttttctaataatgtatatacaccttacttaaatttttc
ccttaagaggtgtcaaattgaataaaacccctatttaaaggctttgctgg
attactctttcatgcccacgggtgtgctctgtaatgctacatttctctaa
gtactaatcttatcttttcaaatcggaaaatttttaaagcactatgctct
cttgtaaatagacttttgcacacatatccttctagcagccttcaaactgg
aggaccacatgcagagagagtcccaaaccttcccaaagtatttctgcttc
tacttttttttttcatgtttcccaaatctgaatccattaaaagccaacag
agcccttctgtgtgaccgtccctcctggctgtcatcacactgtgcataga
gataatacagccagaaggcattttgataaaaacagctttcaagatctatt
cttttgaaggcatttgtatactcattacacaattctcttttgtatccata
gggagttctgtaaataaaacaccaaggtcgtgtgctccagtagctgatgg
cagtcatttcagacagagcaatttcattctgtatatatcttgatgctaga
cagccactcatgaaaaagataatctcaaggctttgttcgtggtgttggca
ggctgatttggccaataaactgtaatggctcagagactccctttgttgga
aatattgctttctttttgcatatacacctgttactttgccccaaacagtt
tctttgctaagtagcgtggagatgtgtttatctcagatgatggccattca
tgtgtaccgtttaaatacccttctgtaggactgcttttatcctgccacac
tgtagcatgtacacatgggtactgctagatggtgtagtggagttattccc
tgct

gaattcatcccatttagttatcttctctgttgccaagttttcaaatcctt
tttaacccaggggactcagtccaacgtaataaaggtagcatctctctgct
ctatgccttaagcagtcttcagatcaatatttttcttgagcctttgccca
aattaaggcaaagcaacatttgtaatggctacaagtaaaaagagtaatgg
tgtttaggttcatcttcagagccaggtggtttatgacagagagtcagggt
agggtccttcatgacaacttttatgaatgccacattttgtcaaacaatgg
gtttagttaagttttgaattcttaaaatagagtgaaaagaatgaaacctg
acatagttggataaggggggttgcatccaactctcagaggagtgaacatg
gaactgaattctgtaggaaggctcacaagagtttggaactgaagtggagc
aggtaagagaaacagtcaaaaattgttatgactcatcagaataaaaagta
ggaaactgaaagccaatgcagcaggacatgctccaaactgagttggatgt
gttgcaacgctatgcaaattatcacagaaagacatacaaggaccttaaca
aacatgtgatctcttatcttgcctttgttaaaccagaaagagtatataga
ctcctggtttctgtacccagaataatatagagaactttaatagtcttgca
atgcttgggatcccaacttctctggtaaaatcaaataaagtggcttacca
atgtctcaaaaaatatgtgagttctaagccttttctatcacctgaacagt
gacggagatagaaagcatcttagggatgactaagaaactttcttatttat
atactaaacttcctacaggcatataaatatctggtccagtagatcttaga
tttacagggctttgtataaagggttttaaatctatggccacaagctagtg
gaagatattctgacatgtgaataaagatgaacagaagaatgtgtattgca
aacctgtgtacaacaaaatatctttctgggccaaagtgtgtcaaatacac
cttgcctatatttgtaatgaagaaaaaaaaacaggtaaatgatcaattct
ggactctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_48505758_48506915
seq2: B6Ng01-176B15.b_47_1200

seq1  GAATTCTCCAACACAGTAGGAATGACCTCAACCACAGTCAGTGAATTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAACACAGTAGGAATGACCTCAACCACAGTCAGTGAATTCTT  50

seq1  AGGGGCTGCAGTAGGGAGGAGGAGAACTGTCACCATTCAGAGCCATGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGCAGTAGGGAGGAGGAGAACTGTCACCATTCAGAGCCATGTGT  100

seq1  TGAATTTGATCTGTGAGTTAATAGCAGGCAGGCTGAAAGAAGTTTCAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTGATCTGTGAGTTAATAGCAGGCAGGCTGAAAGAAGTTTCAGGG  150

seq1  AAAAAAAAATCTGTGTGAATTTATAACCATTAAAGAAAATAGTTTCACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATCTGTGTGAATTTATAACCATTAAAGAAAATAGTTTCACAA  200

seq1  AATTATTGCATAAGCCCCATTTCACGATAGCATTTATTATTAAAAGGCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTGCATAAGCCCCATTTCACGATAGCATTTATTATTAAAAGGCGA  250

seq1  TGTCTCTCACTCTTTTCTAATAATGTATATACACCTTACTTAAATTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCACTCTTTTCTAATAATGTATATACACCTTACTTAAATTTTTC  300

seq1  CCTTAAGAGGTGTCAAATTGAATAAAACCCCTATTTAAAGGCTTTGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGAGGTGTCAAATTGAATAAAACCCCTATTTAAAGGCTTTGCTGG  350

seq1  ATTACTCTTTCATGCCCACGGGTGTGCTCTGTAATGCTACATTTCTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCTTTCATGCCCACGGGTGTGCTCTGTAATGCTACATTTCTCTAA  400

seq1  GTACTAATCTTATCTTTTCAAATCGGAAAATTTTTAAAGCACTATGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAATCTTATCTTTTCAAATCGGAAAATTTTTAAAGCACTATGCTCT  450

seq1  CTTGTAAATAGACTTTTGCACACATATCCTTCTAGCAGCCTTCAAACTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAATAGACTTTTGCACACATATCCTTCTAGCAGCCTTCAAACTGG  500

seq1  AGGACCACATGCAGAGAGAGTCCCAAACCTTCCCAAAGTATTTCTGCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCACATGCAGAGAGAGTCCCAAACCTTCCCAAAGTATTTCTGCTTC  550

seq1  TACTTTTTTTTTTCATGTTTCCCAAATCTGAATCCATTAAAAGCCAACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTTTTTTCATGTTTCCCAAATCTGAATCCATTAAAAGCCAACAG  600

seq1  AGCCCTTCTGTGTGACCGTCCCTCCTGGCTGTCATCACACTGTGCATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTCTGTGTGACCGTCCCTCCTGGCTGTCATCACACTGTGCATAGA  650

seq1  GATAATACAGCCAGAAGGCATTTTGATAAAAACAGCTTTCAAGATCTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATACAGCCAGAAGGCATTTTGATAAAAACAGCTTTCAAGATCTATT  700

seq1  CTTTTGAAGGCATTTGTATACTCATTACACAATTCTCTTTTGTATCCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAAGGCATTTGTATACTCATTACACAATTCTCTTTTGTATCCATA  750

seq1  GGGAGTTCTGTAAATAAAACACCAAGGTCGTGTGCTCCAGTAGCTGATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTCTGTAAATAAAACACCAAGGTCGTGTGCTCCAGTAGCTGATGG  800

seq1  CAGTCATTTCAGACAGAGCAATTTCATTCTGTATATATCTTGATGCTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATTTCAGACAGAGCAATTTCATTCTGTATATATCTTGATGCTAGA  850

seq1  CAGCCACTCATGAAAAAGATAATCTCAAGGCTTTGTTCGTGGTGTTGGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACTCATGAAAAAGATAATCTCAAGGCTTTGTTCGTGGTGTTGGCA  900

seq1  GGCTGATTTGGCCAATAAACTGTAATGGCTCAGAGACTCCCTT--GTGGA  948
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  GGCTGATTTGGCCAATAAACTGTAATGGCTCAGAGACTCCCTTTGTTGGA  950

seq1  AATATTGCTTTCTTTTTGCATATACACCTGTTAC-TTGCCCCAAACAGTT  997
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATATTGCTTTCTTTTTGCATATACACCTGTTACTTTGCCCCAAACAGTT  1000

seq1  TCTTTGCTAAGGTAGCGTGGAGATGTGTTTATCTCAAGATGATGGCCATT  1047
      |||||||||| |||||||||||||||||||||||| ||||||||||||||
seq2  TCTTTGCTAA-GTAGCGTGGAGATGTGTTTATCTC-AGATGATGGCCATT  1048

seq1  CATGTGTTACCGTTTTAATTACC-TCTGTAGGACTGCTTTTTATCTTGCA  1096
      |||||| |||||||| |||  || ||||||||||||| ||||||| ||| 
seq2  CATGTG-TACCGTTTAAATACCCTTCTGTAGGACTGC-TTTTATCCTGC-  1095

seq1  CACA-GGAAGCATGTACACATGGGTACTTTGCTAGATGGTGTAAGTTGGA  1145
      ||||  | |||||||||||||||||||  ||||||||||||||   ||||
seq2  CACACTGTAGCATGTACACATGGGTAC--TGCTAGATGGTGTA--GTGGA  1141

seq1  GGTTATT-CCTGCT  1158
       |||||| ||||||
seq2  -GTTATTCCCTGCT  1154


seq1: chr5_48652170_48653267
seq2: B6Ng01-176B15.g_67_1174 (reverse)

seq1  AAGAGT-CAGAATTTGATCATTTA-CTGTTTTTTTTT-TTCATTAACAAA  47
      |||||| ||||| ||||||||||| |||||||||||| |||||||   ||
seq2  AAGAGTCCAGAA-TTGATCATTTACCTGTTTTTTTTTCTTCATTA--CAA  47

seq1  ATATA-GCAA-GTGTATTTGAACACACCTTGG-CCAGAAAGATA-TTTGT  93
      ||||| |||| ||||||||| |||||| |||| ||||||||||| |||||
seq2  ATATAGGCAAGGTGTATTTG-ACACACTTTGGCCCAGAAAGATATTTTGT  96

seq1  TGTTACACAGGTTTGC-ATACACAT--CTCTG-TCATCTTTA-TCACATG  138
      || ||||||||||||| ||||||||   |||| ||||||||| |||||||
seq2  TG-TACACAGGTTTGCAATACACATTCTTCTGTTCATCTTTATTCACATG  145

seq1  TCAG-ATATCTTCCACTAGCTTGTGGCCATAGATTTAAAA-CCTTTATAC  186
      |||| ||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCAGAATATCTTCCACTAGCTTGTGGCCATAGATTTAAAACCCTTTATAC  195

seq1  AAAG-CCTGTAAATCTAAGATCTACTGGACCAGATATTTATATGCCTGTA  235
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCTGTAAATCTAAGATCTACTGGACCAGATATTTATATGCCTGTA  245

seq1  GGAAGTTTAGTATATAAATAAGAAAGTTTCTTAGTCATCCCTAAGATGCT  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTTAGTATATAAATAAGAAAGTTTCTTAGTCATCCCTAAGATGCT  295

seq1  TTCTATCTCCGTCACTGTTCAGGTGATAGAAAAGGCTTAGAACTCACATA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCTCCGTCACTGTTCAGGTGATAGAAAAGGCTTAGAACTCACATA  345

seq1  TTTTTTGAGACATTGGTAAGCCACTTTATTTGATTTTACCAGAGAAGTTG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAGACATTGGTAAGCCACTTTATTTGATTTTACCAGAGAAGTTG  395

seq1  GGATCCCAAGCATTGCAAGACTATTAAAGTTCTCTATATTATTCTGGGTA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCCAAGCATTGCAAGACTATTAAAGTTCTCTATATTATTCTGGGTA  445

seq1  CAGAAACCAGGAGTCTATATACTCTTTCTGGTTTAACAAAGGCAAGATAA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCAGGAGTCTATATACTCTTTCTGGTTTAACAAAGGCAAGATAA  495

seq1  GAGATCACATGTTTGTTAAGGTCCTTGTATGTCTTTCTGTGATAATTTGC  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCACATGTTTGTTAAGGTCCTTGTATGTCTTTCTGTGATAATTTGC  545

seq1  ATAGCGTTGCAACACATCCAACTCAGTTTGGAGCATGTCCTGCTGCATTG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCGTTGCAACACATCCAACTCAGTTTGGAGCATGTCCTGCTGCATTG  595

seq1  GCTTTCAGTTTCCTACTTTTTATTCTGATGAGTCATAACAATTTTTGACT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAGTTTCCTACTTTTTATTCTGATGAGTCATAACAATTTTTGACT  645

seq1  GTTTCTCTTACCTGCTCCACTTCAGTTCCAAACTCTTGTGAGCCTTCCTA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTTACCTGCTCCACTTCAGTTCCAAACTCTTGTGAGCCTTCCTA  695

seq1  CAGAATTCAGTTCCATGTTCACTCCTCTGAGAGTTGGATGCAACCCCCCT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTCAGTTCCATGTTCACTCCTCTGAGAGTTGGATGCAACCCCCCT  745

seq1  TATCCAACTATGTCAGGTTTCATTCTTTTCACTCTATTTTAAGAATTCAA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAACTATGTCAGGTTTCATTCTTTTCACTCTATTTTAAGAATTCAA  795

seq1  AACTTAACTAAACCCATTGTTTGACAAAATGTGGCATTCATAAAAGTTGT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAACTAAACCCATTGTTTGACAAAATGTGGCATTCATAAAAGTTGT  845

seq1  CATGAAGGACCCTACCCTGACTCTCTGTCATAAACCACCTGGCTCTGAAG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGGACCCTACCCTGACTCTCTGTCATAAACCACCTGGCTCTGAAG  895

seq1  ATGAACCTAAACACCATTACTCTTTTTACTTGTAGCCATTACAAATGTTG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCTAAACACCATTACTCTTTTTACTTGTAGCCATTACAAATGTTG  945

seq1  CTTTGCCTTAATTTGGGCAAAGGCTCAAGAAAAATATTGATCTGAAGACT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCTTAATTTGGGCAAAGGCTCAAGAAAAATATTGATCTGAAGACT  995

seq1  GCTTAAGGCATAGAGCAGAGAGATGCTACCTTTATTACGTTGGACTGAGT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAGGCATAGAGCAGAGAGATGCTACCTTTATTACGTTGGACTGAGT  1045

seq1  CCCCTGGGTTAAAAAGGATTTGAAAACTTGGCAACAGAGAAGATAACTAA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGGTTAAAAAGGATTTGAAAACTTGGCAACAGAGAAGATAACTAA  1095

seq1  ATGGGATGAATTC  1098
      |||||||||||||
seq2  ATGGGATGAATTC  1108


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