BAC Information

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BAC

Clone NameB6Ng01-176D16
Chromosome5 (Build37)
Map Location 143,945,624 - 144,070,160
singlet/doubletdoublet
Overlap gene4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik
Upstream geneC330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak
Downstream geneZdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176D16.bB6Ng01-176D16.g
ACCGA003820GA003821
length1,121807
definitionB6Ng01-176D16.b B6Ng01-176D16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,069,035 - 144,070,160)(143,945,624 - 143,946,429)
sequence
gaattcaagttcaagggaattgttaacttaggtggtttttattttcactt
gtgtttttctgagccttgactttggccgtagggtcctggacactggggac
aggacatccgtcatggtgcagatgttgagaaggaggcagagtccaggaca
gccagagctatacagagaaaccctgtctcaaaaaaaaaaaaaagagagag
aaggagacagaggatgagtgtgacttgggcagtaggcatctgagcgtcag
acacgaaggctctaaactcgggggcccgtcccccactgtccgctcctgtc
cccaaggccagagctgctcctgactgcatgtctctctgcagatgacctca
tcccacctttggacttgcttgaaatgattgtcagctggattttcgaggac
ccgaggctgattctcatcacatttttaaatactcccatcgccgccaacct
gcccataggatttttagagctcacacccctcattgggctgatccggtggt
gcgtgaaggcccctctggcttacaaaaggaagaagccttgcctatccaat
ggccacatcagtcacaaggttgccaaggactcgggtgccagcacggacag
agactcgcacttgctgtactcaaagctccacctgagcgtcctgcaggtcc
tcatgacgctccagctgcacctcacagagaaaaacctgtacgggcgcctg
gggctcatcctgttcgaccacatggtcccgcttgtggaggagatcaacag
actagcagatgaactgaaccccctcaatgcctcccaggagatcgagcttg
ccctggaccgcttggcccaggccttgcaggtggctatgacgtcgggggcc
ctgctgtgcacgagaggtaagtgctgaccccgtgaccccgtgtcgtacgc
agaaaggatggggtctcggacagatactgcctttgcttctttagggactt
gctccccgtccctgggactataggactgttccccagagtcgtcctcatgg
gggtgctgctgtgctctagataccacatcttagatgtcacctggctcttt
cgcacaggtggctagagcatacaggagctttccttctgtaggactaggat
ttgcgtatgtgttgcgtgaac
gaattcagtatgaacagacttccatgttgcttgctgcatagacataggat
gttgtccagaaactggcaaaagaacctgaatggaataatgagccatgaac
caagacagcatcacagaccagagggaggaagggggaagaagctggaactc
agaaagaagggttccagtgtgtgccctcaccttggagggagtagaggaag
gtgacacagtagtgcatcaggagagccaggtttcagctgcagccaccaat
tattacagtgtgttacagtgtgtttggggccatattctggtgtttagttt
ctttaactaaaggaggggctcagagagtaattagtccccttgtctcacac
agcaactcctccttacaaggactgacattgccatgactgtaaaatgtgat
ttaaaacaatcaactctatggtcatgaagcaagccaagagggtgacactt
tgagctctgtgtgcacctgatgtgcgtatgtaacatatatatcaacattc
cattcattttagatagttctcatttgtgtatgagtgtgcaggcacatgcc
atgatgcctgtgtggtcaagagaacaacctttgggagtagtttctcttgc
tccacttgtttctcgggtgtgtcttgtattgttccagtgctggggcactc
tgggctagctggcctgcatgcttcctgaaggcagactcttggcccacaag
cttctggctgtctctcctcctccagtcttgctgtaggatagccaggattc
cagataagccaccacatctggtttgggttttttgttttgtttatgggttt
tgtttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_144069035_144070160
seq2: B6Ng01-176D16.b_43_1163 (reverse)

seq1  GTTCACCGCACACATACGCCAAAATCCTAGTCCTACAGAGGAAAAGCT-C  49
      ||||||   ||||||||||  |||||||||||||||||| | |||||| |
seq2  GTTCACGCAACACATACGC--AAATCCTAGTCCTACAGAAGGAAAGCTCC  48

seq1  TGTATGCTCTAGCCACCCTGTGCCGAAAAGAGCCAGGTGACATCT-AGAT  98
      ||||||||||||||| |||||||   ||||||||||||||||||| ||||
seq2  TGTATGCTCTAGCCA-CCTGTGC--GAAAGAGCCAGGTGACATCTAAGAT  95

seq1  GTGGTATCTAGAGCACAGCAGCA-CCCCATGAGGACGACTCTGGGGGACA  147
      ||||||||||||||||||||||| |||||||||||||||||||||| |||
seq2  GTGGTATCTAGAGCACAGCAGCACCCCCATGAGGACGACTCTGGGGAACA  145

seq1  GTCCCTTATAGTCCCAGGGACGGGGAGCAAGTCCCTAAAGAAGCAAAGGC  197
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCC--TATAGTCCCAGGGACGGGGAGCAAGTCCCTAAAGAAGCAAAGGC  193

seq1  AGTATCTGTCCGAGACCCCCATCCTTTCTGCGTACGACACGGGGTCACGG  247
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGTATCTGTCCGAGA-CCCCATCCTTTCTGCGTACGACACGGGGTCACGG  242

seq1  GGTCAGCACTTACCTCTCGTGCACAGCAGGGCCCCCGACGTCATAGCCAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGCACTTACCTCTCGTGCACAGCAGGGCCCCCGACGTCATAGCCAC  292

seq1  CTGCAAGGCCTGGGCCAAGCGGTCCAGGGCAAGCTCGATCTCCTGGGAGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGGCCTGGGCCAAGCGGTCCAGGGCAAGCTCGATCTCCTGGGAGG  342

seq1  CATTGAGGGGGTTCAGTTCATCTGCTAGTCTGTTGATCTCCTCCACAAGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGGGGGTTCAGTTCATCTGCTAGTCTGTTGATCTCCTCCACAAGC  392

seq1  GGGACCATGTGGTCGAACAGGATGAGCCCCAGGCGCCCGTACAGGTTTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCATGTGGTCGAACAGGATGAGCCCCAGGCGCCCGTACAGGTTTTT  442

seq1  CTCTGTGAGGTGCAGCTGGAGCGTCATGAGGACCTGCAGGACGCTCAGGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGAGGTGCAGCTGGAGCGTCATGAGGACCTGCAGGACGCTCAGGT  492

seq1  GGAGCTTTGAGTACAGCAAGTGCGAGTCTCTGTCCGTGCTGGCACCCGAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTTGAGTACAGCAAGTGCGAGTCTCTGTCCGTGCTGGCACCCGAG  542

seq1  TCCTTGGCAACCTTGTGACTGATGTGGCCATTGGATAGGCAAGGCTTCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGCAACCTTGTGACTGATGTGGCCATTGGATAGGCAAGGCTTCTT  592

seq1  CCTTTTGTAAGCCAGAGGGGCCTTCACGCACCACCGGATCAGCCCAATGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGTAAGCCAGAGGGGCCTTCACGCACCACCGGATCAGCCCAATGA  642

seq1  GGGGTGTGAGCTCTAAAAATCCTATGGGCAGGTTGGCGGCGATGGGAGTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTGAGCTCTAAAAATCCTATGGGCAGGTTGGCGGCGATGGGAGTA  692

seq1  TTTAAAAATGTGATGAGAATCAGCCTCGGGTCCTCGAAAATCCAGCTGAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATGTGATGAGAATCAGCCTCGGGTCCTCGAAAATCCAGCTGAC  742

seq1  AATCATTTCAAGCAAGTCCAAAGGTGGGATGAGGTCATCTGCAGAGAGAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTCAAGCAAGTCCAAAGGTGGGATGAGGTCATCTGCAGAGAGAC  792

seq1  ATGCAGTCAGGAGCAGCTCTGGCCTTGGGGACAGGAGCGGACAGTGGGGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTCAGGAGCAGCTCTGGCCTTGGGGACAGGAGCGGACAGTGGGGG  842

seq1  ACGGGCCCCCGAGTTTAGAGCCTTCGTGTCTGACGCTCAGATGCCTACTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGCCCCCGAGTTTAGAGCCTTCGTGTCTGACGCTCAGATGCCTACTG  892

seq1  CCCAAGTCACACTCATCCTCTGTCTCCTTCTCTCTCTTTTTTTTTTTTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTCACACTCATCCTCTGTCTCCTTCTCTCTCTTTTTTTTTTTTTT  942

seq1  GAGACAGGGTTTCTCTGTATAGCTCTGGCTGTCCTGGACTCTGCCTCCTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGTTTCTCTGTATAGCTCTGGCTGTCCTGGACTCTGCCTCCTT  992

seq1  CTCAACATCTGCACCATGACGGATGTCCTGTCCCCAGTGTCCAGGACCCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACATCTGCACCATGACGGATGTCCTGTCCCCAGTGTCCAGGACCCT  1042

seq1  ACGGCCAAAGTCAAGGCTCAGAAAAACACAAGTGAAAATAAAAACCACCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCCAAAGTCAAGGCTCAGAAAAACACAAGTGAAAATAAAAACCACCT  1092

seq1  AAGTTAACAATTCCCTTGAACTTGAATTC  1126
      |||||||||||||||||||||||||||||
seq2  AAGTTAACAATTCCCTTGAACTTGAATTC  1121

seq1: chr5_143945624_143946429
seq2: B6Ng01-176D16.g_62_868

seq1  GAATTCAGTATGAACAGACTTCCATGTTGCTTGCTGCATAGACATAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATGAACAGACTTCCATGTTGCTTGCTGCATAGACATAGGAT  50

seq1  GTTGTCCAGAAACTGGCAAAAGAACCTGAATGGAATAATGAGCCATGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCCAGAAACTGGCAAAAGAACCTGAATGGAATAATGAGCCATGAAC  100

seq1  CAAGACAGCATCACAGACCAGAGGGAGGAAGGGGGAAGAAGCTGGAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAGCATCACAGACCAGAGGGAGGAAGGGGGAAGAAGCTGGAACTC  150

seq1  AGAAAGAAGGGTTCCAGTGTGTGCCCTCACCTTGGAGGGAGTAGAGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAGGGTTCCAGTGTGTGCCCTCACCTTGGAGGGAGTAGAGGAAG  200

seq1  GTGACACAGTAGTGCATCAGGAGAGCCAGGTTTCAGCTGCAGCCACCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACACAGTAGTGCATCAGGAGAGCCAGGTTTCAGCTGCAGCCACCAAT  250

seq1  TATTACAGTGTGTTACAGTGTGTTTGGGGCCATATTCTGGTGTTTAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAGTGTGTTACAGTGTGTTTGGGGCCATATTCTGGTGTTTAGTTT  300

seq1  CTTTAACTAAAGGAGGGGCTCAGAGAGTAATTAGTCCCCTTGTCTCACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACTAAAGGAGGGGCTCAGAGAGTAATTAGTCCCCTTGTCTCACAC  350

seq1  AGCAACTCCTCCTTACAAGGACTGACATTGCCATGACTGTAAAATGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTCCTCCTTACAAGGACTGACATTGCCATGACTGTAAAATGTGAT  400

seq1  TTAAAACAATCAACTCTATGGTCATGAAGCAAGCCAAGAGGGTGACACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAATCAACTCTATGGTCATGAAGCAAGCCAAGAGGGTGACACTT  450

seq1  TGAGCTCTGTGTGCACCTGATGTGCGTATGTAACATATATATCAACATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCTGTGTGCACCTGATGTGCGTATGTAACATATATATCAACATTC  500

seq1  CATTCATTTTAGATAGTTCTCATTTGTGTATGAGTGTGCAGGCACATGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTTTAGATAGTTCTCATTTGTGTATGAGTGTGCAGGCACATGCC  550

seq1  ATGATGCCTGTGTGGTCAAGAGAACAACCTTTGGGAGTAGTTTCTCTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCCTGTGTGGTCAAGAGAACAACCTTTGGGAGTAGTTTCTCTTGC  600

seq1  TCCACTTGTTTCTCGGGTGTGTCTTGTATTGTTCCAGTGCTGGGGCACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTGTTTCTCGGGTGTGTCTTGTATTGTTCCAGTGCTGGGGCACTC  650

seq1  TGGGCTAGCTGGCCTGCATGCTTCCTGAAGGCAGACTCTTGGCCCACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTAGCTGGCCTGCATGCTTCCTGAAGGCAGACTCTTGGCCCACAAG  700

seq1  CTTCTGGCTGTCTCTCCTCCTCCAGTCTTGCTGTAGGATAGCCAGGATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCTGTCTCTCCTCCTCCAGTCTTGCTGTAGGATAGCCAGGATTC  750

seq1  CAGATAAGCCACCACATCTGGTTTGGGTTTTTTGTTTTG-TTATGGGTTT  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAGATAAGCCACCACATCTGGTTTGGGTTTTTTGTTTTGTTTATGGGTTT  800

seq1  TGTTTGT  806
      |||||||
seq2  TGTTTGT  807