BAC Information

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BAC

Clone NameB6Ng01-176F24
Chromosome5 (Build37)
Map Location 58,504,139 - 58,505,250
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385, LOC100041396, LOC666499, EG625870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176F24.bB6Ng01-176F24.g
ACCGA003925GA003926
length7941,100
definitionB6Ng01-176F24.b B6Ng01-176F24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccagaacttgtatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatccaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatagtggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcagttagcaagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagaactttctacttctatcttgtgaaaaagtttgtgcagaactag
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactatttataactgcttctatttct
ttatgggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtcttttggatt
tcttcaggatctgttgttatgtctcccttttcattttctgattttgttaa
ttagtttttttgtctctgtgccctctagtgagtctagctaagggtttatc
ctatcttgtttgaatttctcaagaacctacttcctcgtttgggt
gaattccaacaacattgaacactttaaaataactatcaggggtgggagaa
gatgcacttctcatacaaactcatttattttaggttcctctaacttagct
caaaataacctaattaagtatgttcgtagtagctttgtgggttagtctgg
aaagaattccttttcagaagaagaaaaaaatatgtggatctttttagttt
atctacaaaacagcaaatttaatcatatcttgcccagtgggaaaggttca
taatgctacttcccatcggttggtagccctagggttaaatattcaatatg
atcatcattatatatgaattactatctagctaaaacctttgttttatgtt
tccaaagcaaaagcatgttaaatgctaactgttttaaaatgtgtcatggt
aagtgtctggacacactgtaaggagatattttatttcactgttttctcaa
attcatgaataatgtataaccggtcacacttcttagatcttcttagactg
agttctgaacctgactgcaattgcaaatgcatttaatcatagccagtccc
catgtgttctttggaagccatgtacgtatatcattttcagataattagtc
ctcattttgaatagacaacattttaaatagttaaatgacattctttaata
catcctaaagggtaaacgagtccctaaatgtattcacagcttttattcag
caaagcaacttctacttgacactttcttgaagacaagttcatgtcaagat
gttttctctttaaaatctctctcttgctcttaagctctgcattatcaagc
ccagttaacatgcagagcaggaatctgcctcttaacttctccccttcttt
ggaaggtaatttgctgcttggtaagaactttatgtcttttatagtttctg
ttctgttaagattcttacatcaatttctttaccaaaacgctaaatacttg
gagaggcacccaagaatgaattatattgtttaaagacaacgttaatagta
attctttcattttaccatctttttctgttcccaaatgcacaaaaaataga
atgagattaattccaaaaatggatttaatgcataaatagtatctattata

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58504139_58505250
seq2: B6Ng01-176F24.g_65_1164

seq1  GAATTCCAACAACATTGAACACTTTAAAATAACTATCAGGGGTGGGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACAACATTGAACACTTTAAAATAACTATCAGGGGTGGGAGAA  50

seq1  GATGCACTTCTCATACAAACTCATTTATTTTAGGTTCCTCTAACTTAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACTTCTCATACAAACTCATTTATTTTAGGTTCCTCTAACTTAGCT  100

seq1  CAAAATAACCTAATTAAGTATGTTCGTAGTAGCTTTGTGGGTTAGTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAACCTAATTAAGTATGTTCGTAGTAGCTTTGTGGGTTAGTCTGG  150

seq1  AAAGAATTCCTTTTCAGAAGAAGAAAAAAATATGTGGATCTTTTTAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTCCTTTTCAGAAGAAGAAAAAAATATGTGGATCTTTTTAGTTT  200

seq1  ATCTACAAAACAGCAAATTTAATCATATCTTGCCCAGTGGGAAAGGTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACAAAACAGCAAATTTAATCATATCTTGCCCAGTGGGAAAGGTTCA  250

seq1  TAATGCTACTTCCCATCGGTTGGTAGCCCTAGGGTTAAATATTCAATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTACTTCCCATCGGTTGGTAGCCCTAGGGTTAAATATTCAATATG  300

seq1  ATCATCATTATATATGAATTACTATCTAGCTAAAACCTTTGTTTTATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCATTATATATGAATTACTATCTAGCTAAAACCTTTGTTTTATGTT  350

seq1  TCCAAAGCAAAAGCATGTTAAATGCTAACTGTTTTAAAATGTGTCATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGCAAAAGCATGTTAAATGCTAACTGTTTTAAAATGTGTCATGGT  400

seq1  AAGTGTCTGGACACACTGTAAGGAGATATTTTATTTCACTGTTTTCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCTGGACACACTGTAAGGAGATATTTTATTTCACTGTTTTCTCAA  450

seq1  ATTCATGAATAATGTATAACCGGTCACACTTCTTAGATCTTCTTAGACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGAATAATGTATAACCGGTCACACTTCTTAGATCTTCTTAGACTG  500

seq1  AGTTCTGAACCTGACTGCAATTGCAAATGCATTTAATCATAGCCAGTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGAACCTGACTGCAATTGCAAATGCATTTAATCATAGCCAGTCCC  550

seq1  CATGTGTTCTTTGGAAGCCATGTACGTATATCATTTTCAGATAATTAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTTCTTTGGAAGCCATGTACGTATATCATTTTCAGATAATTAGTC  600

seq1  CTCATTTTGAATAGACAACATTTTAAATAGTTAAATGACATTCTTTAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTGAATAGACAACATTTTAAATAGTTAAATGACATTCTTTAATA  650

seq1  CATCCTAAAGGGTAAACGAGTCCCTAAATGTATTCACAGCTTTTATTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTAAAGGGTAAACGAGTCCCTAAATGTATTCACAGCTTTTATTCAG  700

seq1  CAAAGCAACTTCTACTTGACACTTTCTTGAAGACAAGTTCATGTCAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAACTTCTACTTGACACTTTCTTGAAGACAAGTTCATGTCAAGAT  750

seq1  GTTTTCTCTTTAAAATCTCTCTCTTGCTCTTAAGCTCTGCATTATCAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTCTTTAAAATCTCTCTCTTGCTCTTAAGCTCTGCATTATCAAGC  800

seq1  CCAGTTAACATGCAGAGCAGGAATCTGCCTCTTAACTTCTCCCCTTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTAACATGCAGAGCAGGAATCTGCCTCTTAACTTCTCCCCTTCTTT  850

seq1  GGAAGGTAATTTGCTGCTTGGTAAGAACTTTATGTCTTTTATAGTTTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTAATTTGCTGCTTGGTAAGAACTTTATGTCTTTTATAGTTTCTG  900

seq1  TTCTGTTAAGATTCTTTACATCAAATTTCTTTACCAAAACGCTAAAATAC  950
      |||||||||||||| ||||||| |||||||||||||||||||| ||||||
seq2  TTCTGTTAAGATTC-TTACATC-AATTTCTTTACCAAAACGCT-AAATAC  947

seq1  TTGGAGAGGCAACCCAAAGAATGAAATTATATTGTTTTAAAGACAAACGT  1000
      |||||||||||  || ||||||| |||||||||| ||||||||| |||||
seq2  TTGGAGAGGCA--CCCAAGAATG-AATTATATTG-TTTAAAGAC-AACGT  992

seq1  T-ATAGTTAATTTCTTTCATTTTACCATC-TTTTCTGTTCCCAAATGCAC  1048
      | |||||  | |||||||||||||||||| ||||||||||||||||||||
seq2  TAATAGT--AATTCTTTCATTTTACCATCTTTTTCTGTTCCCAAATGCAC  1040

seq1  CAAAAATAGAATGGAGATTTAAATTCCAAAAATATGATTTTAAAATGCAT  1098
       ||||||||||| ||||||  ||||||||||||  |||||   |||||||
seq2  AAAAAATAGAAT-GAGATT--AATTCCAAAAAT-GGATTT---AATGCAT  1083

seq1  AAATAGTA---ATTATA  1112
      ||||||||   ||||||
seq2  AAATAGTATCTATTATA  1100