BAC Information

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BAC

Clone NameB6Ng01-176K10
Chromosome5 (Build37)
Map Location 145,866,075 - 146,025,267
singlet/doubletdoublet
Overlap geneArpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655
Upstream geneLmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1, 4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik
Downstream geneLOC677270, EG666311, EG622127, LOC100039566, Cyp3a16, LOC100041375, LOC667065, Cyp3a41, Cyp3a44, Cyp3a11, Cyp3a25, LOC667098, LOC667104, LOC100041449, LOC433961, EG622306, 1700001J03Rik, LOC667121, Rnf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176K10.bB6Ng01-176K10.g
ACCGA004135GA004136
length550529
definitionB6Ng01-176K10.b B6Ng01-176K10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,866,075 - 145,866,630)(146,024,733 - 146,025,267)
sequence
taggccagccaaggctgcacagtatagctagtctttgctactttgtgagt
tctttttcccatcctttatcccccatttcaccccctttcactagatagga
gagaaagaaggatggaggggagggagagagagtttagattcaaggatctc
tatctttcttcttgttccttctttgagcacaactattaagccacaatcaa
caccctgaaagaccaccaaccccacccacccatcaaggctctagcattta
tacactctgaaatgttcccagaattccaaatgtcatacagtcgcagaaac
tatctgcagttgacaaaaccatatctgctagagaacgaggcaaatcaccg
tcagctgctgtgatcgggctgaagcagccctgtatctgtactgagattaa
aaggaaaagacattgtgtgtttttaaagaaaccaaaattccagagttctc
attacagcacggtgaaccctgcctcaaaacaagagctgagctgccgcctc
tttattcttatgccctgcaaggtgcgtttgcacccagaactcagaagtgt

actttgtagaccagtctggccttgaactcagaaatccacctgcctctgcc
tcccaagtgctgggattaaggcgtgcaccaccaccacctggataagttgt
tctttgttgttgttgttgttgttattttagtttgtgacaaggttctctgt
gtagccctggctagcctggaacttgctgtgttgatcaggctggcctctac
ctcctgagtgctggaatcaaaggcatgcaccgccacatccaatataacta
gtaagatgtgaaatgccagtatcatggagctggggctaagttggaaaaaa
ggcttacctatatgtataaggccctaggttcaatctctagcacctcacag
accatgcacggttacaaataccttaatccttaggagataaagaccggagg
atcagaaatttaaggttacctaatgttatgtagtaaattagaggccagcc
tgtactacatgagatcctgtttcaaaaaaaaaaaaaaaaaagccccaggg
ctagagatgtggtttactccctttcaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_145866075_145866630
seq2: B6Ng01-176K10.b_41_596

seq1  GAATTCTAGGCCAGCCAAGGCTGCACAGTATAGCTAGTCTTTGCTACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGCCAGCCAAGGCTGCACAGTATAGCTAGTCTTTGCTACTTT  50

seq1  GTGAGTTCTTTTTCCCATCCTTTATCCCCCATTTCACCCCCTTTCACTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCTTTTTCCCATCCTTTATCCCCCATTTCACCCCCTTTCACTAG  100

seq1  ATAGGAGAGAAAGAAGGATGGAGGGGAGGGAGAGAGAGTTTAGATTCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGAGAAAGAAGGATGGAGGGGAGGGAGAGAGAGTTTAGATTCAAG  150

seq1  GATCTCTATCTTTCTTCTTGTTCCTTCTTTGAGCACAACTATTAAGCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTATCTTTCTTCTTGTTCCTTCTTTGAGCACAACTATTAAGCCAC  200

seq1  AATCAACACCCTGAAAGACCACCAACCCCACCCACCCATCAAGGCTCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACACCCTGAAAGACCACCAACCCCACCCACCCATCAAGGCTCTAG  250

seq1  CATTTATACACTCTGAAATGTTCCCAGAATTCCAAATGTCATACAGTCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATACACTCTGAAATGTTCCCAGAATTCCAAATGTCATACAGTCGC  300

seq1  AGAAACTATCTGCAGTTGACAAAACCATATCTGCTAGAGAACGAGGCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTATCTGCAGTTGACAAAACCATATCTGCTAGAGAACGAGGCAAA  350

seq1  TCACCGTCAGCTGCTGTGATCGGGCTGAAGCAGCCCTGTATCTGTACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCGTCAGCTGCTGTGATCGGGCTGAAGCAGCCCTGTATCTGTACTGA  400

seq1  GATTAAAAGGAAAAGACATTGTGTGTTTTTAAAGAAACCAAAATTCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAAGGAAAAGACATTGTGTGTTTTTAAAGAAACCAAAATTCCAGA  450

seq1  GTTCTCATTACAGCACGGTGAACCCTGCCTCAAAACAAGAGCTGAGCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCATTACAGCACGGTGAACCCTGCCTCAAAACAAGAGCTGAGCTGC  500

seq1  CGCCTCTTTATTCTTATGCCCTGCAAGGTGCGTTTGCACCCAGAACTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCTTTATTCTTATGCCCTGCAAGGTGCGTTTGCACCCAGAACTCAG  550

seq1  AAGTGT  556
      ||||||
seq2  AAGTGT  556

seq1: chr5_146024733_146025267
seq2: B6Ng01-176K10.g_65_599 (reverse)

seq1  CCCTGAAAGGGAGTAAACCACATCTCTAGCCCTGGGGCTTTTTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAAGGGAGTAAACCACATCTCTAGCCCTGGGGCTTTTTTTTTTTT  50

seq1  TTTTTTGAAACAGGATCTCATGTAGTACAGGCTGGCCTCTAATTTACTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAAACAGGATCTCATGTAGTACAGGCTGGCCTCTAATTTACTAC  100

seq1  ATAACATTAGGTAACCTTAAATTTCTGATCCTCCGGTCTTTATCTCCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTAGGTAACCTTAAATTTCTGATCCTCCGGTCTTTATCTCCTAA  150

seq1  GGATTAAGGTATTTGTAACCGTGCATGGTCTGTGAGGTGCTAGAGATTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAGGTATTTGTAACCGTGCATGGTCTGTGAGGTGCTAGAGATTGA  200

seq1  ACCTAGGGCCTTATACATATAGGTAAGCCTTTTTTCCAACTTAGCCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGGCCTTATACATATAGGTAAGCCTTTTTTCCAACTTAGCCCCAG  250

seq1  CTCCATGATACTGGCATTTCACATCTTACTAGTTATATTGGATGTGGCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGATACTGGCATTTCACATCTTACTAGTTATATTGGATGTGGCGG  300

seq1  TGCATGCCTTTGATTCCAGCACTCAGGAGGTAGAGGCCAGCCTGATCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCCTTTGATTCCAGCACTCAGGAGGTAGAGGCCAGCCTGATCAAC  350

seq1  ACAGCAAGTTCCAGGCTAGCCAGGGCTACACAGAGAACCTTGTCACAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAGTTCCAGGCTAGCCAGGGCTACACAGAGAACCTTGTCACAAAC  400

seq1  TAAAATAACAACAACAACAACAACAAAGAACAACTTATCCAGGTGGTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAACAACAACAACAACAACAAAGAACAACTTATCCAGGTGGTGGT  450

seq1  GGTGCACGCCTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCACGCCTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCT  500

seq1  GAGTTCAAGGCCAGACTGGTCTACAAAGTGAATTC  535
      |||||||||||||||||||||||||||||||||||
seq2  GAGTTCAAGGCCAGACTGGTCTACAAAGTGAATTC  535