BAC Information

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BAC

Clone NameB6Ng01-176P16
Chromosome5 (Build37)
Map Location 12,417,501 - 12,515,413
singlet/doubletdoublet
Overlap geneSema3d, LOC668015
Upstream geneLOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626, EG668059
Downstream geneLOC100042917, LOC668069, LOC433845, LOC625989, LOC670717, Sema3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176P16.bB6Ng01-176P16.g
ACCGA004373GA004374
length1,0691,127
definitionB6Ng01-176P16.b B6Ng01-176P16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,417,501 - 12,418,582)(12,514,281 - 12,515,413)
sequence
gaattccagtacagcaatgccaagtgactataaacttcaggccataaatc
taacaagggctggaaaatacaggagcacaaagacaacatccaaatgactt
ttaggattaaagtaggaagttcactagtgcgttgtatacacagacatctc
cttagggcctgatgtgatgactgatcctgcttacagggacatgtctctta
ttttcacaaggatgagaaagaagcacttaggagactttgagaatctcttt
cagttcttagtaccttagcaggtcagtaattttagtaggcaaacaaaaat
gaaccaaatggcttaataaatattattgtcttgagaacctagattgaaaa
atcataactaatattctaattaattctgaaacaatgaattacttactaac
aaagtgtgtgtatctgtggggtgtggcacagctacttatgtttttgatca
gatggatgactgtgaacctcatgatctattcttcatagaactcaagaaag
tagttgttttttatcagatttactgagacttccacacagttaggttacac
tggaacacaaagtggtactcactgatgtggaaactgagatagcctgctca
gttgttcatgtactgtctgacagatgtccaactttatttttaactgaaca
tttagcatgtttcactatgcaccaaacaaaattacgtagtactacagagt
tgcctcctgtcctcagttatagattaacagcgtagacagctcattgctat
cttcaaccatagtctccaattactaaaattgagaatccaaaaggctcatg
acagcagacataactggaacacattgtaatataactatataagccctgaa
caataatgtttaatcgatatattttaagtttttgagtcttactaaaataa
atctctctcatgatataaagtgtaataatctctctttccagtgtgggtac
cgttgtggaaaggatcttgaaggagttgaggagagggaaagcatattata
catatgaaaaattcataaaaatgcatacactaaaaacctacatttaccaa
gaacagtatataaggaggg
gaattctgcctgacatggatggcagaaattaccatagttttgcaagcact
aatcttttaactgttaaataacatagaacatgtaacatccatgactttgc
gttattcagtcattactgacttttattgagtgtggttcttttacaagttt
tggaagaaaattatttttgagggaaagtcaaagccaactgtttattgtat
gaagaaatctaattatggaaaagaagagcgagtatcaagtagtgctctgt
tctgtgatttaaacaataaacataattacaagctaaaaataaatacaagt
tttgagaatactgcatttctttcttttagattacactaaggtcttgtctt
agaagactgttgttagcattttatgatagaaattctttcctgattggctg
ccaattttgggtaaaaatagctatcatttaattagtgcatggttgttgaa
ttcaacaatttaaacccatagcaatagacacctgggctttattataacaa
actccccaccccctggcatttaaaacatatgtcgtaatagggacagagtt
tgaaactacgagattttagacctaaactcctagcatgacaccatgagaag
atgacaaaatcttagcctactgaacataacatgtttctttctcccacaag
cctcttttgcacacggtaatcatacctatcccagtatgctttattgtcag
ggttttcaaattgtctttgatttcttcttatgttgtcttccaattgtttt
aacatctccttccatgtgggacaatttacagacaacagagagtttcaaca
gaaactttaaattaaaattccctctaatatggtaaaaaagaaatttaaaa
caaaagttcccagctactccagaagaaaacaaaacacatgcctccaaggt
tcattacttgttttcatgtcccaccgcgtgacatttctgtagattcaccc
tagagtctaccaggactcaactcatttgagtatcaccctgacctgtcctg
tgtccctgcctctgtatgcatctaagtttatctgatggggagtgagactg
attgaggctttactgagactgcccggaggattcttgcctggtttattctg
catcctgataatggtactctaagaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12417501_12418582
seq2: B6Ng01-176P16.b_44_1112

seq1  GAATTCCAGTACAGCAATGCCAAGTGACTATAAACTTCAGGCCATAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTACAGCAATGCCAAGTGACTATAAACTTCAGGCCATAAATC  50

seq1  TAACAAGGGCTGGAAAATACAGGAGCACAAAGACAACATCCAAATGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGGGCTGGAAAATACAGGAGCACAAAGACAACATCCAAATGACTT  100

seq1  TTAGGATTAAAGTAGGAAGTTCACTAGTGCGTTGTATACACAGACATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATTAAAGTAGGAAGTTCACTAGTGCGTTGTATACACAGACATCTC  150

seq1  CTTAGGGCCTGATGTGATGACTGATCCTGCTTACAGGGACATGTCTCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGGCCTGATGTGATGACTGATCCTGCTTACAGGGACATGTCTCTTA  200

seq1  TTTTCACAAGGATGAGAAAGAAGCACTTAGGAGACTTTGAGAATCTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAAGGATGAGAAAGAAGCACTTAGGAGACTTTGAGAATCTCTTT  250

seq1  CAGTTCTTAGTACCTTAGCAGGTCAGTAATTTTAGTAGGCAAACAAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTTAGTACCTTAGCAGGTCAGTAATTTTAGTAGGCAAACAAAAAT  300

seq1  GAACCAAATGGCTTAATAAATATTATTGTCTTGAGAACCTAGATTGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAAATGGCTTAATAAATATTATTGTCTTGAGAACCTAGATTGAAAA  350

seq1  ATCATAACTAATATTCTAATTAATTCTGAAACAATGAATTACTTACTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAACTAATATTCTAATTAATTCTGAAACAATGAATTACTTACTAAC  400

seq1  AAAGTGTGTGTATCTGTGGGGTGTGGCACAGCTACTTATGTTTTTGATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTGTGTATCTGTGGGGTGTGGCACAGCTACTTATGTTTTTGATCA  450

seq1  GATGGATGACTGTGAACCTCATGATCTATTCTTCATAGAACTCAAGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATGACTGTGAACCTCATGATCTATTCTTCATAGAACTCAAGAAAG  500

seq1  TAGTTGTTTTTTATCAGATTTACTGAGACTTCCACACAGTTAGGTTACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTTTTTTATCAGATTTACTGAGACTTCCACACAGTTAGGTTACAC  550

seq1  TGGAACACAAAGTGGTACTCACTGATGTGGAAACTGAGATAGCCTGCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACACAAAGTGGTACTCACTGATGTGGAAACTGAGATAGCCTGCTCA  600

seq1  GTTGTTCATGTACTGTCTGACAGATGTCCAACTTTATTTTTAACTGAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCATGTACTGTCTGACAGATGTCCAACTTTATTTTTAACTGAACA  650

seq1  TTTAGCATGTTTCACTATGCACCAAACAAAATTACGTAGTACTACAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCATGTTTCACTATGCACCAAACAAAATTACGTAGTACTACAGAGT  700

seq1  TGCCTCCTGTCCTCAGTTATAGATTAACAGCGTAGACAGCTCATTGCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCTGTCCTCAGTTATAGATTAACAGCGTAGACAGCTCATTGCTAT  750

seq1  CTTCAACCATAGTCTCCAATTACTAAAATTGAGAATCCAAAAGGCTCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACCATAGTCTCCAATTACTAAAATTGAGAATCCAAAAGGCTCATG  800

seq1  ACAGCAGACATAACTGGAACACATTGTAATATAACTATATAAGCCCTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGACATAACTGGAACACATTGTAATATAACTATATAAGCCCTGAA  850

seq1  CAATAATGTTTAATCGATATATTTTAAGTTTTTGAGTCTTACTAAAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATGTTTAATCGATATATTTTAAGTTTTTGAGTCTTACTAAAATAA  900

seq1  ATCTCTCTCATGATATAAAGTGTAATAATCTCTCTTTCCAGTGTGGGTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCTCATGATATAAAGTGTAATAATCTCTCTTTCCAGTGTGGGTAC  950

seq1  CGTTGTGGAAAGGATCTTGAAGGAGTTGAGGAAGAGGGAAAGCATAATTA  1000
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  CGTTGTGGAAAGGATCTTGAAGGAGTTGAGG-AGAGGGAAAGCAT-ATTA  998

seq1  TAACATATGAAAAAATTCAATAAAAAATTGCATACACTAAAAAAACCCTT  1050
      | ||||||| |||||||| |||||||  |||||||||||||||   ||| 
seq2  T-ACATATG-AAAAATTC-ATAAAAA--TGCATACACTAAAAA---CCT-  1039

seq1  AACATTAACCAAGAAACAGTATATAGGGAGGG  1082
       ||||| |||||| ||||||||||| ||||||
seq2  -ACATTTACCAAG-AACAGTATATAAGGAGGG  1069

seq1: chr5_12514281_12515413
seq2: B6Ng01-176P16.g_65_1191 (reverse)

seq1  ACTTCTTA-AATA-CATTATCAGGATACAGAATAACACA-GCAGAAACCC  47
      |||||||| | || |||||||||||| ||||||||  || |||  || ||
seq2  ACTTCTTAGAGTACCATTATCAGGATGCAGAATAAACCAGGCAAGAATCC  50

seq1  TCTGTGCAGTTCTCAGTAAAGCTTAAACCGGTCTCACTCCCCATCAATAT  97
      || | |||| |||||||||||| | || | ||||||||||||||| | ||
seq2  TCCGGGCAG-TCTCAGTAAAGCCTCAATCAGTCTCACTCCCCATC-AGAT  98

seq1  AAACTTTAGATGCATACAGAGGCAGGGACACAGGGACAGGTCAGGGTGAT  147
      |||| ||||||||||||||||||||||||||| |||||||||||||||| 
seq2  AAAC-TTAGATGCATACAGAGGCAGGGACACA-GGACAGGTCAGGGTGA-  145

seq1  TACTCAAATGGAGTTGAGTTCCTGGTAGACTCTAGGGTGAATCTACAG-A  196
      ||||||||| |||||||| ||||||||||||||||||||||||||||| |
seq2  TACTCAAAT-GAGTTGAG-TCCTGGTAGACTCTAGGGTGAATCTACAGAA  193

seq1  ATGTCACCGCGTGGGACATGAAAACAAGTAATGAACCTTGGAGGCATGTG  246
      |||||||   ||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACGCGGTGGGACATGAAAACAAGTAATGAACCTTGGAGGCATGTG  243

seq1  TTTTTGTTTTCTTTCTGGAGTAGCTGGGAACTTTTGTTTTAAATTTTCTT  296
       |||||||||| ||||||||||||||||||||||||||||||| ||||||
seq2  -TTTTGTTTTC-TTCTGGAGTAGCTGGGAACTTTTGTTTTAAA-TTTCTT  290

seq1  TTTTACCATATTAGAGGGAATTTTAATTTAAAGTTTCTGTTGAAACTCTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCATATTAGAGGGAATTTTAATTTAAAGTTTCTGTTGAAACTCTC  340

seq1  TGTTGTCTGTAAATTGTCCCACATGGAAGGAGATGTTAAAACAATTGGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCTGTAAATTGTCCCACATGGAAGGAGATGTTAAAACAATTGGAA  390

seq1  GACAACATAAGAAGAAATCAAAGACAATTTGAAAACCCTGACAATAAAGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACATAAGAAGAAATCAAAGACAATTTGAAAACCCTGACAATAAAGC  440

seq1  ATACTGGGATAGGTATGATTACCGTGTGCAAAAGAGGCTTGTGGGAGAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGGATAGGTATGATTACCGTGTGCAAAAGAGGCTTGTGGGAGAAA  490

seq1  GAAACATGTTATGTTCAGTAGGCTAAGATTTTGTCATCTTCTCATGGTGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATGTTATGTTCAGTAGGCTAAGATTTTGTCATCTTCTCATGGTGT  540

seq1  CATGCTAGGAGTTTAGGTCTAAAATCTCGTAGTTTCAAACTCTGTCCCTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTAGGAGTTTAGGTCTAAAATCTCGTAGTTTCAAACTCTGTCCCTA  590

seq1  TTACGACATATGTTTTAAATGCCAGGGGGTGGGGAGTTTGTTATAATAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGACATATGTTTTAAATGCCAGGGGGTGGGGAGTTTGTTATAATAAA  640

seq1  GCCCAGGTGTCTATTGCTATGGGTTTAAATTGTTGAATTCAACAACCATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGTGTCTATTGCTATGGGTTTAAATTGTTGAATTCAACAACCATG  690

seq1  CACTAATTAAATGATAGCTATTTTTACCCAAAATTGGCAGCCAATCAGGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATTAAATGATAGCTATTTTTACCCAAAATTGGCAGCCAATCAGGA  740

seq1  AAGAATTTCTATCATAAAATGCTAACAACAGTCTTCTAAGACAAGACCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTCTATCATAAAATGCTAACAACAGTCTTCTAAGACAAGACCTT  790

seq1  AGTGTAATCTAAAAGAAAGAAATGCAGTATTCTCAAAACTTGTATTTATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAATCTAAAAGAAAGAAATGCAGTATTCTCAAAACTTGTATTTATT  840

seq1  TTTAGCTTGTAATTATGTTTATTGTTTAAATCACAGAACAGAGCACTACT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTTGTAATTATGTTTATTGTTTAAATCACAGAACAGAGCACTACT  890

seq1  TGATACTCGCTCTTCTTTTCCATAATTAGATTTCTTCATACAATAAACAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTCGCTCTTCTTTTCCATAATTAGATTTCTTCATACAATAAACAG  940

seq1  TTGGCTTTGACTTTCCCTCAAAAATAATTTTCTTCCAAAACTTGTAAAAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTGACTTTCCCTCAAAAATAATTTTCTTCCAAAACTTGTAAAAG  990

seq1  AACCACACTCAATAAAAGTCAGTAATGACTGAATAACGCAAAGTCATGGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACTCAATAAAAGTCAGTAATGACTGAATAACGCAAAGTCATGGA  1040

seq1  TGTTACATGTTCTATGTTATTTAACAGTTAAAAGATTAGTGCTTGCAAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACATGTTCTATGTTATTTAACAGTTAAAAGATTAGTGCTTGCAAAA  1090

seq1  CTATGGTAATTTCTGCCATCCATGTCAGGCAGAATTC  1133
      |||||||||||||||||||||||||||||||||||||
seq2  CTATGGTAATTTCTGCCATCCATGTCAGGCAGAATTC  1127