BAC Information

Click to search

BAC

Clone NameB6Ng01-176P18
Chromosome5 (Build37)
Map Location 130,619,638 - 130,773,204
singlet/doubletdoublet
Overlap geneKctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1
Upstream geneGpr133, LOC100039355, Sfrs8, Mmp17, EG620248, Zfp11, 1700016K13Rik, Mrps17, Gbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1
Downstream geneA330070K13Rik, Caln1, Wbscr17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176P18.bB6Ng01-176P18.g
ACCGA004377GA004378
length1,1201,141
definitionB6Ng01-176P18.b B6Ng01-176P18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,772,093 - 130,773,204)(130,619,638 - 130,620,777)
sequence
gaattctacaccacagctgggcagtggtagtgcacgcttttaatcccagc
actcgggaggcagaggcaggcggatttctgagttcaaggccagcgcctga
tctacagagtgaattccaggacaaccagggctacacagagaaaccctgtc
tcggggttaaaaaaaaaaaagaaaaaagaaaaagctacactgtaactcct
gtgtctgagaactccatcactatttagaatgatggagaaggagactactt
tggaatacaaccttaaacccaaccctccctcactgtcataaagtccagag
gctgtgtggacaccatgacgacacagtctagctttagatttctgagtgaa
gtatgatcacacagggcgagtaggatcattctgcaggcaaaggcaagcct
ggacctgagtttagtccccaggacccaggtggcggccagcctcagctcaa
cagtgacatctggaccagggtcaggccagccgtccactcttcgctgtctt
gtctgtaagacaataatgacgctgccaccttacctgatctcctcagggaa
ctgcgcattggtgacaaggaagctggagatgccgtgctggtggagcagct
tcaaaagcctgttgatttctgggtacatgatcggctcacccacgagtgac
agcgcacagtgcttgacctccatcccctcttcaaagcgctccgccttgag
gcctggcacgcctgagagagcagtggtgaaagtcagagcaggcacaaacc
cggagagcatggcttccatgactactaatgatgctttgatttcagaggga
aaaccctgtttttatcacttaaacaggagctcaacctgtggctcaacagg
ctcgaaactcttagtaatcctcctgtttcagcgcacacacacacacacac
acacacacacacacacacacacacacacacgcaattgctgagattactgg
gagtggacccaccaccacccacccttaaaacccaattcttcttcttttta
aaaaaatgtttttcattttggtgggtgtctgcatgccaccacattcgtgc
agtgctctagagaccaggaagagggcattccacctcacctgcaactgagc
tatgcctaagtgagcctgcc
gaattctcagaaatccttctaacctctcaagtcgctgcaattaaaggtat
ttgcaaccaaggttttccttcctgtgtgagtccacggaaaaagcgctagc
acagcagccatgtccttgccagccattggtgttgcagtgctcaatttcta
ttacacagcaggtgccctcagccctccacaacacatcctcaaggacagcc
tgcttaggccttttttcactggcccgctgctatggagacaaaccagccag
tcctgggccctttcccaggacacatggaccgggatgataaagtggagtgg
cctggagcttcgcgcctgctagtcagaaagccaatgaaagcaggaccacg
gtgctgcccctatgagcgggcttcctgccaatcaggggcggaggccagcg
aggacacagccaatagcaggagcaattgggtggtctgtcctttcgggaac
cgcgccgggggaccagcgctgtcgttgaacgtcggaagtgcagaacgcgt
gccctttaggtggcctataagaatgggactgatcggcaagccgttgtcag
ttgtcactctagtttgagacctcgatggttggatcagacctttaaccgtc
atagcggagctaatcggacactgccagtagtaggaggcgaccgggtgagg
ccagagatgctacctgcgctgtggttgctatgcgcagagagccgcttccc
tagataagtggcctggaccaagggaggtagcgctcccgttagttagatag
ccaatcagaatggaacaaacccaaccagacgtgtttaccctataattgga
caatgctcttgccaatcatagcaggagttcatgaaacctcggccaatagc
aagaagcgcctggttccgatttgcagcgcagggtccacgcggtggttgct
gatcgaggtcgtcagtgggcgatcacctcccctcgggccaaaccttggag
cagacagcgtcgctcgcgcttgtcagccagagccaatcagattgggtagg
cctgtagcactacgcttaggccgaattgttgttctgtgattggggcggaa
cctcctgacatcaaggcggagctagccgaagattcgggtccaatgggctt
gggagcagccaaggtcagaacagcgacttactgtaagcgcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_130772093_130773204
seq2: B6Ng01-176P18.b_52_1171 (reverse)

seq1  GGCAGCAGCTCAC-TAGCCATTAGCTTCAGTTCCAGGTGA-GTGG-ATGC  47
      |||||  |||||| ||| || |||| |||||| ||||||| |||| ||||
seq2  GGCAG--GCTCACTTAGGCA-TAGC-TCAGTTGCAGGTGAGGTGGAATGC  46

seq1  CCTC-TCCTGGTCTCCTGGGGCACTGCACGAATGTGGT-GCATGCAGACA  95
      |||| ||||||||| || | |||||||||||||||||| |||||||||||
seq2  CCTCTTCCTGGTCT-CTAGAGCACTGCACGAATGTGGTGGCATGCAGACA  95

seq1  CCCA-CAAAATG-AAAACATTTTTTTAAAAAGAAG-AGAATTGGGTTTTA  142
      |||| ||||||| |||||||||||||||||||||| ||||||||||||||
seq2  CCCACCAAAATGAAAAACATTTTTTTAAAAAGAAGAAGAATTGGGTTTTA  145

seq1  A-GGTGGGT-GTGGT-GGTCCACT-CCAGTAATCTCAGCAATGGC--GTG  186
      | ||||||| ||||| |||||||| ||||||||||||||||| ||  |||
seq2  AGGGTGGGTGGTGGTGGGTCCACTCCCAGTAATCTCAGCAATTGCGTGTG  195

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCTGAAA  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCTGAAA  245

seq1  CAGGAGGATTACTAAGAGTTTCGAGCCTGTTTGAGCCACAGGTTGAGCTC  286
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGGAGGATTACTAAGAGTTTCGAGCCTG-TTGAGCCACAGGTTGAGCTC  294

seq1  CTGTTTAAGTGATAAAAACAGGGTTTTCCCTCTGAAATCAAAGCATCATT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAAGTGATAAAAACAGGGTTTTCCCTCTGAAATCAAAGCATCATT  344

seq1  AGTAGTCATGGAAGCCATGCTCTCCGGGTTTGTGCCTGCTCTGACTTTCA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCATGGAAGCCATGCTCTCCGGGTTTGTGCCTGCTCTGACTTTCA  394

seq1  CCACTGCTCTCTCAGGCGTGCCAGGCCTCAAGGCGGAGCGCTTTGAAGAG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCTCTCTCAGGCGTGCCAGGCCTCAAGGCGGAGCGCTTTGAAGAG  444

seq1  GGGATGGAGGTCAAGCACTGTGCGCTGTCACTCGTGGGTGAGCCGATCAT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGAGGTCAAGCACTGTGCGCTGTCACTCGTGGGTGAGCCGATCAT  494

seq1  GTACCCAGAAATCAACAGGCTTTTGAAGCTGCTCCACCAGCACGGCATCT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCAGAAATCAACAGGCTTTTGAAGCTGCTCCACCAGCACGGCATCT  544

seq1  CCAGCTTCCTTGTCACCAATGCGCAGTTCCCTGAGGAGATCAGGTAAGGT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTCCTTGTCACCAATGCGCAGTTCCCTGAGGAGATCAGGTAAGGT  594

seq1  GGCAGCGTCATTATTGTCTTACAGACAAGACAGCGAAGAGTGGACGGCTG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCGTCATTATTGTCTTACAGACAAGACAGCGAAGAGTGGACGGCTG  644

seq1  GCCTGACCCTGGTCCAGATGTCACTGTTGAGCTGAGGCTGGCCGCCACCT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGACCCTGGTCCAGATGTCACTGTTGAGCTGAGGCTGGCCGCCACCT  694

seq1  GGGTCCTGGGGACTAAACTCAGGTCCAGGCTTGCCTTTGCCTGCAGAATG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTGGGGACTAAACTCAGGTCCAGGCTTGCCTTTGCCTGCAGAATG  744

seq1  ATCCTACTCGCCCTGTGTGATCATACTTCACTCAGAAATCTAAAGCTAGA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTACTCGCCCTGTGTGATCATACTTCACTCAGAAATCTAAAGCTAGA  794

seq1  CTGTGTCGTCATGGTGTCCACACAGCCTCTGGACTTTATGACAGTGAGGG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCGTCATGGTGTCCACACAGCCTCTGGACTTTATGACAGTGAGGG  844

seq1  AGGGTTGGGTTTAAGGTTGTATTCCAAAGTAGTCTCCTTCTCCATCATTC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGGGTTTAAGGTTGTATTCCAAAGTAGTCTCCTTCTCCATCATTC  894

seq1  TAAATAGTGATGGAGTTCTCAGACACAGGAGTTACAGTGTAGCTTTTTCT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGTGATGGAGTTCTCAGACACAGGAGTTACAGTGTAGCTTTTTCT  944

seq1  TTTTTCTTTTTTTTTTTTAACCCCGAGACAGGGTTTCTCTGTGTAGCCCT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTTTTTTTTTAACCCCGAGACAGGGTTTCTCTGTGTAGCCCT  994

seq1  GGTTGTCCTGGAATTCACTCTGTAGATCAGGCGCTGGCCTTGAACTCAGA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTCCTGGAATTCACTCTGTAGATCAGGCGCTGGCCTTGAACTCAGA  1044

seq1  AATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAAGCGTGCACTAC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAAGCGTGCACTAC  1094

seq1  CACTGCCCAGCTGTGGTGTAGAATTC  1112
      ||||||||||||||||||||||||||
seq2  CACTGCCCAGCTGTGGTGTAGAATTC  1120

seq1: chr5_130619638_130620777
seq2: B6Ng01-176P18.g_68_1208

seq1  GAATTCTCAGAAATCCTTCTAACCTCTCAAGTCGCTGCAATTAAAGGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAAATCCTTCTAACCTCTCAAGTCGCTGCAATTAAAGGTAT  50

seq1  TTGCAACCAAGGTTTTCCTTCCTGTGTGAGTCCACGGAAAAAGCGCTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACCAAGGTTTTCCTTCCTGTGTGAGTCCACGGAAAAAGCGCTAGC  100

seq1  ACAGCAGCCATGTCCTTGCCAGCCATTGGTGTTGCAGTGCTCAATTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGCCATGTCCTTGCCAGCCATTGGTGTTGCAGTGCTCAATTTCTA  150

seq1  TTACACAGCAGGTGCCCTCAGCCCTCCACAACACATCCTCAAGGACAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAGCAGGTGCCCTCAGCCCTCCACAACACATCCTCAAGGACAGCC  200

seq1  TGCTTAGGCCTTTTTTCACTGGCCCGCTGCTATGGAGACAAACCAGCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGGCCTTTTTTCACTGGCCCGCTGCTATGGAGACAAACCAGCCAG  250

seq1  TCCTGGGCCCTTTCCCAGGACACATGGACCGGGATGATAAAGTGGAGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGCCCTTTCCCAGGACACATGGACCGGGATGATAAAGTGGAGTGG  300

seq1  CCTGGAGCTTCGCGCCTGCTAGTCAGAAAGCCAATGAAAGCAGGACCACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGCTTCGCGCCTGCTAGTCAGAAAGCCAATGAAAGCAGGACCACG  350

seq1  GTGCTGCCCCTATGAGCGGGCTTCCTGCCAATCAGGGGCGGAGGCCAGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCCCCTATGAGCGGGCTTCCTGCCAATCAGGGGCGGAGGCCAGCG  400

seq1  AGGACACAGCCAATAGCAGGAGCAATTGGGTGGTCTGTCCTTTCGGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACAGCCAATAGCAGGAGCAATTGGGTGGTCTGTCCTTTCGGGAAC  450

seq1  CGCGCCGGGGGACCAGCGCTGTCGTTGAACGTCGGAAGTGCAGAACGCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCCGGGGGACCAGCGCTGTCGTTGAACGTCGGAAGTGCAGAACGCGT  500

seq1  GCCCTTTAGGTGGCCTATAAGAATGGGACTGATCGGCAAGCCGTTGTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTAGGTGGCCTATAAGAATGGGACTGATCGGCAAGCCGTTGTCAG  550

seq1  TTGTCACTCTAGTTTGAGACCTCGATGGTTGGATCAGACCTTTAACCGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACTCTAGTTTGAGACCTCGATGGTTGGATCAGACCTTTAACCGTC  600

seq1  ATAGCGGAGCTAATCGGACACTGCCAGTAGTAGGAGGCGACCGGGTGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCGGAGCTAATCGGACACTGCCAGTAGTAGGAGGCGACCGGGTGAGG  650

seq1  CCAGAGATGCTACCTGCGCTGTGGTTGCTATGCGCAGAGAGCCGCTTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGATGCTACCTGCGCTGTGGTTGCTATGCGCAGAGAGCCGCTTCCC  700

seq1  TAGATAAGTGGCCTGGACCAAGGGAGGTAGCGCTCCCGTTAGTTAGATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAGTGGCCTGGACCAAGGGAGGTAGCGCTCCCGTTAGTTAGATAG  750

seq1  CCAATCAGAATGGAACAAACCCAACCAGACGTGTTTACCCTATAATTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAGAATGGAACAAACCCAACCAGACGTGTTTACCCTATAATTGGA  800

seq1  CAATGCTCTTGCCAATCATAGCAGGAGTTCATGAAACCTCGGCCAATAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTCTTGCCAATCATAGCAGGAGTTCATGAAACCTCGGCCAATAGC  850

seq1  AAGAAGCGCCTGGTTCCGATTTGCAGCGCAGGGTCCACGCGGTGGTTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCGCCTGGTTCCGATTTGCAGCGCAGGGTCCACGCGGTGGTTGCT  900

seq1  GATCGAGGTCGTCAGTGGGCGATCACCTCCCCTC-GGCCAAACCCTGGAG  949
      |||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  GATCGAGGTCGTCAGTGGGCGATCACCTCCCCTCGGGCCAAACCTTGGAG  950

seq1  CAGACAGGCGTCGCTCGCGCTTGTCAGCCAAGAGCCAATCAGAATTGGGT  999
      |||||| |||||||||||||||||||||| |||||||||||| |||||||
seq2  CAGACA-GCGTCGCTCGCGCTTGTCAGCC-AGAGCCAATCAG-ATTGGGT  997

seq1  AGGCCTGTAGCCACTACGGCTTAAGGCCGAATTGTTTGTTCTGTGATTGG  1049
      |||||||||| |||||| |||| ||||||||||| |||||||||||||||
seq2  AGGCCTGTAG-CACTAC-GCTT-AGGCCGAATTG-TTGTTCTGTGATTGG  1043

seq1  G--CGAACCTCCTGACAATCAGGGCGGAGCCAG-CGAAGATTCGG--CCA  1094
      |   |||||||||||| |||| |||||||| || |||||||||||  |||
seq2  GGCGGAACCTCCTGAC-ATCAAGGCGGAGCTAGCCGAAGATTCGGGTCCA  1092

seq1  ATGG--CTGGAGGCAGCC-AGGTCAGACCAGCGACTAACTGTAGGCGCG  1140
      ||||   |||  |||||| |||||||| |||||||| |||||| |||||
seq2  ATGGGCTTGGGAGCAGCCAAGGTCAGAACAGCGACTTACTGTAAGCGCG  1141