BAC Information

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BAC

Clone NameB6Ng01-177C13
Chromosome5 (Build37)
Map Location 136,300,599 - 136,494,400
singlet/doubletdoublet
Overlap gene2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2
Upstream geneWbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2
Downstream geneUpk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1, Mylc2pl, Emid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177C13.bB6Ng01-177C13.g
ACCGA004508GA004509
length1,038981
definitionB6Ng01-177C13.b B6Ng01-177C13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,493,363 - 136,494,400)(136,300,599 - 136,301,564)
sequence
gaattccaggaggagagccacacccaccatgcatgtgtgggtttcatggg
ctctgagcttccatctttacactgaataaccaagagctataaccacagag
cctcctccccatcttgcctttcaatgttctacacagacagaacctgacag
tcccaggcagaccgaggctcaggtcaaaggaaatccaaggtcccacatcc
tggacatcaaggctgaatgtgctacactcagctccaatttgcacaaacaa
tgacatgccaggttccactacagagcttctatgcttatatagagtggtag
gtacaatgaatataaagcccaatataaaaatcttaagacctctcatgact
tacaggtgcagaaaaaagacaaagcaggcgccggagctttcactgaaaga
tccacagtagtactagagaaaaagaaaaattcaggggccagccagatgcc
ttagcaagggaaagagccttgccgccaggcctgatgaccagagctggatc
cctgggaaccataggaggagagaactgatctccacgagttgccctctgaa
ctccacacttgtgccatggcacaatgtatgtttgtgcatgtgtgtatgtg
gagacacacataaatgtaatgaaaaatattttaaaacagctgagcacggt
ggtgcatgccttccaccccagccctcaggaggcaggggcaggtgaaactg
taaatctgaggccagcctagactacacagtgaactctgagacagccagag
ctacacagtgagatcctgtctcacaaaataagttaattaacgaactaaaa
tttggtaaaaagaaccctggacctgcaatatataacacgctaatctcaca
caggtcagtggctgacaaggacccatggcaagaatgggaacaaggcagag
catcagttccactcacacggcgatggcagtggggaaaggggggccctcag
agcagcattgagagcacagcagatgctgctgggtgtggtggctcatgtct
gtaatcccagcagtccggagactgagaggatggagttc
gaattcaagttggaaaccctaggatggggttggtgcttggctagaagaca
agacattcccatctcattcagaaactaggctgacatcaggccttgggaag
agatggccatggagtttacacaaatgtcaaagggaaacagactggatgtt
gggagcaaggacaacttccactgaagtccctgaagatgacagtagtgaga
tagaagaagtgagccccaccactacaaacacgggctagctgtatattaca
aacacaggcaagctgcgcgtattacagttggttgtttgtttattgagtgt
gtaccatggcacaaacatgtggcagtgagaagacagtgtgggggtcagtt
ctctcccccaactatgtaaatcttaggtcttgaggcttggaggcaagcag
ctttacccactgagccattcccctgcccgagattggatttttgcccctct
tgtttattttgacacaaggtctcatgcaacacaggcaggtcttgaactca
ctgtgtagccaaaggtgacattgaactatagatcctcctacctccacatc
ccagtgctgagctggtcacagatggctgcccggtgtgacagcccacccca
gacagacactaaggacaggaagatagatgaactcaactactctcagagag
accactggcaggccggggattggagcgtgtctgtaatcctagcacacgag
aggctaagacagaagaatcacaagtctagtccagtatgggaagttaggtg
tggtggcacacacatctagtcctcctcctatttgagaggcagaggctggt
ggagttctgtgaaggtctgaggccagcctgggtccacggagtggagttct
agggaatccagggctacctggtaagacactatcttcaaaaaatattggct
ggggataagggcttagctggttcggagccgcaccaaggccctgggccttg
gaccttggagcactgaagaacctgggccatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_136493363_136494400
seq2: B6Ng01-177C13.b_48_1085 (reverse)

seq1  GAACTCAATCCTCTCAGTCTCCGGACTGCTGGGATTACAGACATGAGCCA  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCATCCTCTCAGTCTCCGGACTGCTGGGATTACAGACATGAGCCA  50

seq1  CCACACCCAGCAGCATCTGCTGTGCTCTCAATGCTGCTCTGAGGGGCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCACACCCAGCAGCATCTGCTGTGCTCTCAATGCTGCTCTGAGGGCCCCC  100

seq1  CCTTCCCCACTGCCATCGCCGTGTGAGTGGAACTGATGCTCTGCCTTGTT  150
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCCACTGCCATCGCCGTGTGAGTGGAACTGATGCTCTGCCTTGTT  150

seq1  CCCATTCTTGCCATGGGTCCTTGTCAGCCACTGACCTGTGTGAGATTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCTTGCCATGGGTCCTTGTCAGCCACTGACCTGTGTGAGATTAGC  200

seq1  GTGTTATATATTGCAGGTCCAGGGTTCTTTTTACCAAATTTTAGTTCGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTATATATTGCAGGTCCAGGGTTCTTTTTACCAAATTTTAGTTCGTT  250

seq1  AATTAACTTATTTTGTGAGACAGGATCTCACTGTGTAGCTCTGGCTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACTTATTTTGTGAGACAGGATCTCACTGTGTAGCTCTGGCTGTCT  300

seq1  CAGAGTTCACTGTGTAGTCTAGGCTGGCCTCAGATTTACAGTTTCACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTCACTGTGTAGTCTAGGCTGGCCTCAGATTTACAGTTTCACCTG  350

seq1  CCCCTGCCTCCTGAGGGCTGGGGTGGAAGGCATGCACCACCGTGCTCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCCTCCTGAGGGCTGGGGTGGAAGGCATGCACCACCGTGCTCAGC  400

seq1  TGTTTTAAAATATTTTTCATTACATTTATGTGTGTCTCCACATACACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAAATATTTTTCATTACATTTATGTGTGTCTCCACATACACACA  450

seq1  TGCACAAACATACATTGTGCCATGGCACAAGTGTGGAGTTCAGAGGGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAAACATACATTGTGCCATGGCACAAGTGTGGAGTTCAGAGGGCAA  500

seq1  CTCGTGGAGATCAGTTCTCTCCTCCTATGGTTCCCAGGGATCCAGCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTGGAGATCAGTTCTCTCCTCCTATGGTTCCCAGGGATCCAGCTCTG  550

seq1  GTCATCAGGCCTGGCGGCAAGGCTCTTTCCCTTGCTAAGGCATCTGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCAGGCCTGGCGGCAAGGCTCTTTCCCTTGCTAAGGCATCTGGCTG  600

seq1  GCCCCTGAATTTTTCTTTTTCTCTAGTACTACTGTGGATCTTTCAGTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGAATTTTTCTTTTTCTCTAGTACTACTGTGGATCTTTCAGTGAA  650

seq1  AGCTCCGGCGCCTGCTTTGTCTTTTTTCTGCACCTGTAAGTCATGAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCGGCGCCTGCTTTGTCTTTTTTCTGCACCTGTAAGTCATGAGAGG  700

seq1  TCTTAAGATTTTTATATTGGGCTTTATATTCATTGTACCTACCACTCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGATTTTTATATTGGGCTTTATATTCATTGTACCTACCACTCTAT  750

seq1  ATAAGCATAGAAGCTCTGTAGTGGAACCTGGCATGTCATTGTTTGTGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCATAGAAGCTCTGTAGTGGAACCTGGCATGTCATTGTTTGTGCAA  800

seq1  ATTGGAGCTGAGTGTAGCACATTCAGCCTTGATGTCCAGGATGTGGGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGCTGAGTGTAGCACATTCAGCCTTGATGTCCAGGATGTGGGACC  850

seq1  TTGGATTTCCTTTGACCTGAGCCTCGGTCTGCCTGGGACTGTCAGGTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTTCCTTTGACCTGAGCCTCGGTCTGCCTGGGACTGTCAGGTTCT  900

seq1  GTCTGTGTAGAACATTGAAAGGCAAGATGGGGAGGAGGCTCTGTGGTTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGTAGAACATTGAAAGGCAAGATGGGGAGGAGGCTCTGTGGTTAT  950

seq1  AGCTCTTGGTTATTCAGTGTAAAGATGGAAGCTCAGAGCCCATGAAACCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTGGTTATTCAGTGTAAAGATGGAAGCTCAGAGCCCATGAAACCC  1000

seq1  ACACATGCATGGTGGGTGTGGCTCTCCTCCTGGAATTC  1038
      ||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCATGGTGGGTGTGGCTCTCCTCCTGGAATTC  1038

seq1: chr5_136300599_136301564
seq2: B6Ng01-177C13.g_64_1044

seq1  GAATTCAAGTTGGAAACCCTAGGATGGGGTTGGTGCTTGGCTAGAAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTTGGAAACCCTAGGATGGGGTTGGTGCTTGGCTAGAAGACA  50

seq1  AGACATTCCCATCTCATTCAGAAACTAGGCTGACATCAGGCCTTGGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTCCCATCTCATTCAGAAACTAGGCTGACATCAGGCCTTGGGAAG  100

seq1  AGATGGCCATGGAGTTTACACAAATGTCAAAGGGAAACAGACTGGATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCCATGGAGTTTACACAAATGTCAAAGGGAAACAGACTGGATGTT  150

seq1  GGGAGCAAGGACAACTTCCACTGAAGTCCCTGAAGATGACAGTAGTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCAAGGACAACTTCCACTGAAGTCCCTGAAGATGACAGTAGTGAGA  200

seq1  TAGAAGAAGTGAGCCCCACCACTACAAACACGGGCTAGCTGTATATTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAAGTGAGCCCCACCACTACAAACACGGGCTAGCTGTATATTACA  250

seq1  AACACAGGCAAGCTGCGCGTATTACAGTTGGTTGTTTGTTTATTGAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGGCAAGCTGCGCGTATTACAGTTGGTTGTTTGTTTATTGAGTGT  300

seq1  GTACCATGGCACAAACATGTGGCAGTGAGAAGACAGTGTGGGGGTCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATGGCACAAACATGTGGCAGTGAGAAGACAGTGTGGGGGTCAGTT  350

seq1  CTCTCCCCCAACTATGTAAATCTTAGGTCTTGAGGCTTGGAGGCAAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCCCAACTATGTAAATCTTAGGTCTTGAGGCTTGGAGGCAAGCAG  400

seq1  CTTTACCCACTGAGCCATTCCCCTGCCCGAGATTGGATTTTTGCCCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCCACTGAGCCATTCCCCTGCCCGAGATTGGATTTTTGCCCCTCT  450

seq1  TGTTTATTTTGACACAAGGTCTCATGCAACACAGGCAGGTCTTGAACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTTTGACACAAGGTCTCATGCAACACAGGCAGGTCTTGAACTCA  500

seq1  CTGTGTAGCCAAAGGTGACATTGAACTATAGATCCTCCTACCTCCACATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAGCCAAAGGTGACATTGAACTATAGATCCTCCTACCTCCACATC  550

seq1  CCAGTGCTGAGCTGGTCACAGATGGCTGCCCGGTGTGACAGCCCACCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCTGAGCTGGTCACAGATGGCTGCCCGGTGTGACAGCCCACCCCA  600

seq1  GACAGACACTAAGGACAGGAAGATAGATGAACTCAACTACTCTCAGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACACTAAGGACAGGAAGATAGATGAACTCAACTACTCTCAGAGAG  650

seq1  ACCACTGGCAGGCCGGGGATTGGAGCGTGTCTGTAATCCTAGCACACGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGGCAGGCCGGGGATTGGAGCGTGTCTGTAATCCTAGCACACGAG  700

seq1  AGGCTAAGACAGAAGAATCACAAGTCTAGTCCAGTATGGGAAGTTAGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAAGACAGAAGAATCACAAGTCTAGTCCAGTATGGGAAGTTAGGTG  750

seq1  TGGTGGCACACACATCTAGTCCTCCTCCTATTTGAGAGGCAGAGGCTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCACACACATCTAGTCCTCCTCCTATTTGAGAGGCAGAGGCTGGT  800

seq1  GGAGTTCTGTG-AGGTCTGAGGCCAGCCT-GGTCCACGGAGT-GAGTTCT  847
      ||||||||||| ||||||||||||||||| |||||||||||| |||||||
seq2  GGAGTTCTGTGAAGGTCTGAGGCCAGCCTGGGTCCACGGAGTGGAGTTCT  850

seq1  AGGGAATCCAGGGCTACCTGGTAAGACACTATCT--CAAAAATA-TGGCT  894
      ||||||||||||||||||||||||||||||||||   ||||||| |||||
seq2  AGGGAATCCAGGGCTACCTGGTAAGACACTATCTTCAAAAAATATTGGCT  900

seq1  GGGGAT-AGGGCTTAGCTGGT--CGAG-CGCA-CAAAGCCCTGGGC--TT  937
      |||||| ||||||||||||||   ||| |||| ||| |||||||||  | 
seq2  GGGGATAAGGGCTTAGCTGGTTCGGAGCCGCACCAAGGCCCTGGGCCTTG  950

seq1  GACCTT-GAGCACTGAAGACACT-GGCCATG  966
      |||||| ||||||||||||  || |||||||
seq2  GACCTTGGAGCACTGAAGAACCTGGGCCATG  981