BAC Information

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BAC

Clone NameB6Ng01-177C18
Chromosome5 (Build37)
Map Location 94,676,376 - 94,677,480
singlet/doubletsinglet
Overlap genenone
Upstream geneCcng2, LOC632115, EG330129, LOC100040885, LOC666064, LOC100040909, C87414, LOC666075, LOC666077, LOC666081, EG665802, LOC100040408, LOC100040981, EG622719, LOC100041003, BC061212, EG622744, LOC100041032
Downstream geneLOC100041042, LOC624421, AA792892, LOC665521, LOC665551, LOC100041102, LOC665560, LOC100041115, LOC624507, LOC621203, LOC100041153, LOC665499, LOC624698, LOC100041179, LOC624655, LOC100041166, LOC665469, LOC622894, EG666121, LOC666125, EG666133, LOC100041296, LOC100041253
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177C18.bB6Ng01-177C18.g
ACCGA004518GA004519
length1,1901,098
definitionB6Ng01-177C18.b B6Ng01-177C18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgatcgtgggcccactgtcgtacttctctggctgtgaaatga
gttccttggtcagaagcaatactgtgtggaataccatgacgatagataag
gcattctgtcagtccatgaatggtggttttagcagaggcattacgtgcag
gaaaggcaaatccataaccagaataagtatctactccagtaagaacaaaa
cgctgtcctttccacgaaggaagtggtccaatgtagtcaacctgccacca
ggttgctggctggtcacctcgaggaatggtgccatatctggggctcagtg
ttggtttctgctgttggcagatctggcaatcagcagcagctgtagccagg
tcagctttggtgagtggaagcccgtgttgctgagcccaagcataacctcc
atctcgaccaccatggccactttgttcatgtgcccattgagcaatgacag
ggatggctggggagagaggctgactgtccacagaacgggtcatcttatcc
acttgattattgaactcctcctcggctgaagtcaccttttggtgagcatt
tacatgggacacaaatatcttcacatcctttgcccatttggagagatcta
tccacatacttcttccccagatgtctttctcaccaattttccaattgtga
tctttccaagtccctgaccatccagccaatccattggctacagcccatga
atcagtgaataatcgtacatctggcaatttcttcttggaatcaaactgta
ataccatgtgcactgcccgaagttctgcccactgtgaagatttcccttca
cctgtgtctttcaaggttgtcccagaaaggggttgtaatgctgcagctgt
ccacttctgggtggtgcctgcataacgtgcagagccatcagtaaaccagg
ctctagtcttctcctcttcggtcagtcgatcatagggaacaccccatgag
gctataggcacatgttggcagcagatggcattgtaacagagtagaaccat
agcatttgagcactctcatgtactgctgtgctcagaccgctctgccgatc
acgtataatacacttcatttgataatagactggtgcctgtgcgcgtccca
ctttatgacttggcaagtctggatgtacccagctcatgatgtagtcagtc
gcaatgtacttggttcatatcacgatcgagtttcaaccta
gaattcaaacccaaatttgtgaggagcgggtgtggcggcagtcccaccgg
cgccagggactgcagctaagtcgtatgatttgcccctgacttcctcatat
aagccaaaaacatcttgagagctgcacaggtgttccaggataccggtgaa
tccattttgatggagatatgcccctgctgccctgattagctgaagctgca
tgcctggtgaggtggcgtggcctgctatgcatggatgggaactgagagta
taaaagagtgagaggcccagggtttggaagagatctaaacaagggagata
taaacaagggagatctaaacaagggagatctaaacaagaagaaacaggac
tgaataaacgtgtgcagaaggatcctgttgcagcatcattcttcctggcc
agttgagtgcgcgcaagacaaattcagttttagctttaactgaaagagtg
ttttctttgataatttgtaagtcttttaatttttgagacagcattttgct
atgttgcccagattggactggaactgaccatgtagctaagagtggttgga
acctgcagtccttctgtccctgtctcctgaatacttgagtcattggcatg
tgtcaccaaatccagccacagctcccaggagctgacattacaggctatta
ctcaagaatcttctctttcattttagtgtttctggctagtttgattgctt
ggttagttttttgttaagctgaaacatggtctcctatagtccaggctacc
ccagaaatatatatgtatcttagatgagtttgagcagcagagaccttctg
cctctacctcctaagtggtgggacacaagtgtcttaacagcatgtggtga
tgaagagtgttcaaatcatgctagacaagcccttccttcaactcactaca
tgtctagtatctacatttaaacttttatttcatttacttcttgtcagcat
tcaggaaacatagactcattaaagaaaaagtgaaattctcatgggtagag
aatatataggaaaatacattaatatctgagaggagttacctctcctgcct
aataagagaaactctggtggatgatttgtgtgtgaatgtgtataactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_94676376_94677480
seq2: B6Ng01-177C18.g_64_1161

seq1  GAATTCAAACCCAAATTTGTGAGGAGCGGGTGTGGCGGCAGTCCCACCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCCAAATTTGTGAGGAGCGGGTGTGGCGGCAGTCCCACCGG  50

seq1  CGCCAGGGACTGCAGCTAAGTCGTATGATTTGCCCCTGACTTCCTCATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGGGACTGCAGCTAAGTCGTATGATTTGCCCCTGACTTCCTCATAT  100

seq1  AAGCCAAAAACATCTTGAGAGCTGCACAGGTGTTCCAGGATACCGGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAAAACATCTTGAGAGCTGCACAGGTGTTCCAGGATACCGGTGAA  150

seq1  TCCATTTTGATGGAGATATGCCCCTGCTGCCCTGATTAGCTGAAGCTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTGATGGAGATATGCCCCTGCTGCCCTGATTAGCTGAAGCTGCA  200

seq1  TGCCTGGTGAGGTGGCGTGGCCTGCTATGCATGGATGGGAACTGAGAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGTGAGGTGGCGTGGCCTGCTATGCATGGATGGGAACTGAGAGTA  250

seq1  TAAAAGAGTGAGAGGCCCAGGGTTTGGAAGAGATCTAAACAAGGGAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAGTGAGAGGCCCAGGGTTTGGAAGAGATCTAAACAAGGGAGATA  300

seq1  TAAACAAGGGAGATCTAAACAAGGGAGATCTAAACAAGAAGAAACAGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAGGGAGATCTAAACAAGGGAGATCTAAACAAGAAGAAACAGGAC  350

seq1  TGAATAAACGTGTGCAGAAGGATCCTGTTGCAGCATCATTCTTCCTGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAACGTGTGCAGAAGGATCCTGTTGCAGCATCATTCTTCCTGGCC  400

seq1  AGTTGAGTGCGCGCAAGACAAATTCAGTTTTAGCTTTAACTGAAAGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGTGCGCGCAAGACAAATTCAGTTTTAGCTTTAACTGAAAGAGTG  450

seq1  TTTTCTTTGATAATTTGTAAGTCTTTTAATTTTTGAGACAGCATTTTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTGATAATTTGTAAGTCTTTTAATTTTTGAGACAGCATTTTGCT  500

seq1  ATGTTGCCCAGATTGGACTGGAACTGACCATGTAGCTAAGAGTGGTTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCCCAGATTGGACTGGAACTGACCATGTAGCTAAGAGTGGTTGGA  550

seq1  ACCTGCAGTCCTTCTGTCCCTGTCTCCTGAATACTTGAGTCATTGGCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAGTCCTTCTGTCCCTGTCTCCTGAATACTTGAGTCATTGGCATG  600

seq1  TGTCACCAAATCCAGCCACAGCTCCCAGGAGCTGACATTACAGGCTATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCAAATCCAGCCACAGCTCCCAGGAGCTGACATTACAGGCTATTA  650

seq1  CTCAAGAATCTTCTCTTTCATTTTAGTGTTTCTGGCTAGTTTGATTGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAATCTTCTCTTTCATTTTAGTGTTTCTGGCTAGTTTGATTGCTT  700

seq1  GGTTAGTTTTTTGTTAAGCTGAAACATGGTCTCCTATAGTCCAGGCTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTTTTTTGTTAAGCTGAAACATGGTCTCCTATAGTCCAGGCTACC  750

seq1  CCAGAAATATATATGTATCTTAGATGAGTTTGAGCAGCAGAGACCTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATATATATGTATCTTAGATGAGTTTGAGCAGCAGAGACCTTCTG  800

seq1  CCTCTACCTCCTAAGTGGTGGGACACAAGTGTCTTAACAGCATGTGGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACCTCCTAAGTGGTGGGACACAAGTGTCTTAACAGCATGTGGTGA  850

seq1  TGAAGAGTGTTCAAATCATGCTAGACAAG-CCTTCCTTCAACTCACTACA  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGAAGAGTGTTCAAATCATGCTAGACAAGCCCTTCCTTCAACTCACTACA  900

seq1  TGTCTAGTATCTACATTTAAACTTTTATTTCATTTACTTCTTGTCAGCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGTATCTACATTTAAACTTTTATTTCATTTACTTCTTGTCAGCAT  950

seq1  TCAGGAAACATAGACTCATTAAAG-AAAAGTGAAATTCTCATGGTTAAGA  998
      |||||||||||||||||||||||| ||||||||||||||||||| | |||
seq2  TCAGGAAACATAGACTCATTAAAGAAAAAGTGAAATTCTCATGGGT-AGA  999

seq1  GAAATATATAGAAAAATACATTAAATATCTTGAAGAGGAGTTTACCTCTC  1048
      | ||||||||| |||||||||| |||||||   ||||||| |||||||||
seq2  G-AATATATAGGAAAATACATT-AATATCT--GAGAGGAG-TTACCTCTC  1044

seq1  TTG-CTAATAAGAGAAAACTCTGTTGGGTTGGAATTTGTGTGTGATTGTG  1097
       || |||||||||| |||||||| ||| |    |||||||||||| ||||
seq2  CTGCCTAATAAGAG-AAACTCTGGTGGAT---GATTTGTGTGTGAATGTG  1090

seq1  TATAAGTG  1105
      ||||| ||
seq2  TATAACTG  1098