BAC Information

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BAC

Clone NameB6Ng01-177F10
Chromosome5 (Build37)
Map Location 85,284,493 - 85,285,395
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC231368, Epha5, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177F10.bB6Ng01-177F10.g
ACCGA004637GA004638
length908959
definitionB6Ng01-177F10.b B6Ng01-177F10.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatatgtatgtgtatctatgtatactgtgtgtatgtatgtgtttt
attgcttgtatatgtacttttatgtattatcatttatgtatgcattacta
atttaatattattagttgtcagcaggacacacttggaagaatgtcaattt
aagaattcatcaagaaatggccaactcaatatgggtaattccacaacaca
atgatggctgtattagcaaagtagcccatgaaaagcaggaaggaatccaa
accagttaaaacactactttttccttattccttctttaatttctgcccca
atatctttttatgttttctttgtttcaaggttatccattaaatgcagtaa
ttactgagcttcgtagggtaagatattcttctttggagaacaatgttttc
tcacaccatttctagagagaaatttggtgcaagactatttcttctcttaa
agtcaaaattattctctaatttgttttttaaatgtctttattcctgagaa
gtgatctgcttaaaaatgaagatattcattgtgtattagcaataagtttt
attataattaattattgctcatgatcagtagcttgagattttaattaatt
ttaaagtgactatttgtttccgaattttcatatataaaatcgtttactat
cattatatttgaaacattccctatggagaagctcttctccaatgaattta
atacttttagcttttcttctttgtattttgttgtgatttctcttaagaca
tttatcatatatcagattctttttcaatctgatatatcaatgggttatag
cacatcaaaatctattaataattatctcatgatactttttatttcatatt
ttttatttttgctcatttagatattgtgctatatcaaatttcttgattaa
aatatatg

gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatggtttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
agaaaatgtggtacatctacacaatggagtactactcagctagtaaaaag
aatgaatttatgaaattcctaggcaaatggatggaactggagggcatcat
tctgagtgaggtaacacattcacaaaggaactcacacaatatgtactcac
tgataagtggatattagcccaaaacctaggatacccaagatataagatac
aatttgctaaacacatgaaactcaagaagaatgaagactgaagtgtggac
actatgcccctccttagaattgggaacaaaacacccatggaaggagttac
aaagacaaagtttggagctgagatgaaagaatggaccatgtagagactgc
catatccagggatccaccccataatcagcatccaaacgctgacaccattg
catatactagcaagattttatcgaaaggacccaggtgtagctgtctcttt
gtgagactataccggggcctagcaaacacagaagtggatgctcacagtca
gctaatggatggatcacagggctcccaatggaggagctagagaaagtacc
caaggagctaaagggatctgcaaccctataggtggaacaacattattgaa
ctaaccagtaccccggagctcttgactctagctgcatattgtatcaaaga
tggcctagtcctgccatcactggaaagagaggcccatgggacacacaact
ttataattgctccagtactagggaaacgcagggccaataaggggcagtgg
gagggggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_85284493_85285395
seq2: B6Ng01-177F10.b_49_956

seq1  GAATTCATATGTATGTGTATCTATGTATACTGTGTGTATGTATGTGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGTATGTGTATCTATGTATACTGTGTGTATGTATGTGTTTT  50

seq1  ATTGCTTGTATATGTACTTTTATGTATTATCATTTATGTATGCATTACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTGTATATGTACTTTTATGTATTATCATTTATGTATGCATTACTA  100

seq1  ATTTAATATTATTAGTTGTCAGCAGGACACACTTGGAAGAATGTCAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATATTATTAGTTGTCAGCAGGACACACTTGGAAGAATGTCAATTT  150

seq1  AAGAATTCATCAAGAAATGGCCAACTCAATATGGGTAATTCCACAACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTCATCAAGAAATGGCCAACTCAATATGGGTAATTCCACAACACA  200

seq1  ATGATGGCTGTATTAGCAAAGTAGCCCATGAAAAGCAGGAAGGAATCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGCTGTATTAGCAAAGTAGCCCATGAAAAGCAGGAAGGAATCCAA  250

seq1  ACCAGTTAAAACACTACTTTTTCCTTATTCCTTCTTTAATTTCTGCCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTAAAACACTACTTTTTCCTTATTCCTTCTTTAATTTCTGCCCCA  300

seq1  ATATCTTTTTATGTTTTCTTTGTTTCAAGGTTATCCATTAAATGCAGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTTTATGTTTTCTTTGTTTCAAGGTTATCCATTAAATGCAGTAA  350

seq1  TTACTGAGCTTCGTAGGGTAAGATATTCTTCTTTGGAGAACAATGTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAGCTTCGTAGGGTAAGATATTCTTCTTTGGAGAACAATGTTTTC  400

seq1  TCACACCATTTCTAGAGAGAAATTTGGTGCAAGACTATTTCTTCTCTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCATTTCTAGAGAGAAATTTGGTGCAAGACTATTTCTTCTCTTAA  450

seq1  AGTCAAAATTATTCTCTAATTTGTTTTTTAAATGTCTTTATTCCTGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAATTATTCTCTAATTTGTTTTTTAAATGTCTTTATTCCTGAGAA  500

seq1  GTGATCTGCTTAAAAATGAAGATATTCATTGTGTATTAGCAATAAGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTGCTTAAAAATGAAGATATTCATTGTGTATTAGCAATAAGTTTT  550

seq1  ATTATAATTAATTATTGCTCATGATCAGTAGCTTGAGATTTTAATTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATTAATTATTGCTCATGATCAGTAGCTTGAGATTTTAATTAATT  600

seq1  TTAAAGTGACTATTTGTTTCCGAATTTTCATATATAAAATCGTTTACTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTGACTATTTGTTTCCGAATTTTCATATATAAAATCGTTTACTAT  650

seq1  CATTATATTTGAAACATTCCCTATGGAGAAGCTCTTCTCCAATGAATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATATTTGAAACATTCCCTATGGAGAAGCTCTTCTCCAATGAATTTA  700

seq1  ATACTTTTAGCTTTTCTTCTTTGTATTTTGTTGTGATTTCTC-TAAGACA  749
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATACTTTTAGCTTTTCTTCTTTGTATTTTGTTGTGATTTCTCTTAAGACA  750

seq1  -TTATCATATATCAGATTC-TTTTCAATCTGATATATCAAT-GGTTATAG  796
       |||||||||||||||||| ||||||||||||||||||||| ||||||||
seq2  TTTATCATATATCAGATTCTTTTTCAATCTGATATATCAATGGGTTATAG  800

seq1  CACATCAAAATCTATTAATAATTATCTCATGATACTTTTTATTTCATATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAAAATCTATTAATAATTATCTCATGATACTTTTTATTTCATATT  850

seq1  TTTTATTTTTGCTCATTTAGATATTGTGTTATATCAATTTTCTTGATT-A  895
      |||||||||||||||||||||||||||| |||||||| |||||||||| |
seq2  TTTTATTTTTGCTCATTTAGATATTGTGCTATATCAAATTTCTTGATTAA  900

seq1  TATATATG  903
       |||||||
seq2  AATATATG  908


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