BAC Information

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BAC

Clone NameB6Ng01-177F13
Chromosome5 (Build37)
Map Location 23,102,110 - 23,103,231
singlet/doubletsinglet
Overlap geneSrpk2
Upstream geneLOC100042067, LOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254
Downstream genePus7, Rint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177F13.bB6Ng01-177F13.g
ACCGA004643GA004644
length1,0991,190
definitionB6Ng01-177F13.b B6Ng01-177F13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaatgctgataccaaaattagccagtgacatattgagatatata
acaagactgagctaaatttaagatgttcctctctgaagtcttcaccagct
cccagtctacttattcaatagcttcttaccctagatactgtatatacacc
attttacttaagtaccacagtgactcagctactgtgcattaactcatctg
ctaaactccaactcagtggttacctaattgcccaaggtaaacgatgcaat
acagtagccaagctcggctgaaatgtggtttggctccacaacatctgata
atgaccacgattagttgcctgtaccacccaccactgtcttcagcacccac
tttatacgcatcatctccttagatgtacctactcctaagggagacagacg
tcagcatctctattttcatatgaagagactaagacttgtagaggtcatgg
aacttgcaggagtggcctctgaaggtcatgactcaaagcccatttggtct
ccacaatttatcatactcttttcagtgctaatggttaccttttcaaaaca
aacaaacaaaaaaaaaagattctgtgtgtacaggaagaccagatcaaacc
tgattttttattgggataaaaacttggagctggagatcacacagagagca
cttgctagttctgcaaaggatcccggttcgattcccagcaatcagtgtgg
ttcataaccctctgtaactccagttccaggggcccagtgccctcttctga
ccttcatgggcatcaagcagaactgtggtgaacatacaaaacactaacaa
aatgaaattaatgaatctaatttttaaaaaaatagtaagccgggcgtggt
ggcgcacgcctttaatcccagcactggcaagacagaagcaggtggatttc
tgagttcgagggccagcctggtctacaaagtgagtgccaggaacagccca
gggctatatagagaaaccctgtctcgaaacaaacaaaaaacaaaacaaca
acacaacaaaaaagagtagctatattaattttccttctcgaggtttgctt
tagtcctatagtctaactgccacttgcacgactgcagtcattctgagag
gaattccagagtaggtgaccttaatcttgctccatctctaggaatcgttc
agaaccattgttggggcctaggggcttgccactggaagtctggaaactgt
tgctgccccatcgtccttgcctcaggccaggtggtagtgcagcttctgag
gcctggatatgcctagttcttaaaaacagattgaggcccagtctcctgaa
ctgcctatttgaagcctgtcatggagttagcctagccttctcaaagcaag
gtaaataactcaaagtagcttcaggaagtcctgaaactgaccagatccac
taggcccctccctgccagaataaagtataggagccaaggagtctcagaca
agctgagctgcaaagactgagaccagaccagcctcctgaaagaagcagaa
accagctgagctgcctggaagaggtatagagcagaggttcctggaaagga
ccccgccagcctctgggctgcctgcaggctgtgcagtgttcccagctttg
taaggggtcatctgtgctaaggtgagccttagtgatgcagctgtctgagt
catttctgattctgtaagtcacccgctggttcaccaagttggacctcggt
agacaagtaaatgtgagctgaatctctagcatgaccatgtcacagcagca
ggagcgtcaaggcattccagactgccttgataacagcaggaagtgaggac
caagaggagcacaaaaataacaccctcatgggcagtcagacaactcaaca
gagttaatttgtgctaattagaacatccaaaggatactgcactattaggt
tgttgttgcaggatttaactggactgtggtctggctgcagagtaaatagg
aaggatcatccagaggactgagggcagcaagtacctcagcatcagacagc
agagggaagacttaattgcaaaggaagaacgtaaagaggggaaagaaaac
agtagaccaccgattttccccagcaatgttgaacacatcaagtgccaatg
catctgattgaaaagatccctttgcgggaagagttcaatctaaatctcac
agtagaaattggacatccatggtactacagtagcatccaatcgatacagg
atttctcaatgccaagcctgtcagtaccatgatgcttcaggcatgcagga
aagtctgaagccatacagttcttttactacacatgagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_23102110_23103231
seq2: B6Ng01-177F13.b_45_1143

seq1  GAATTCTAATGCTGATACCAAAATTAGCCAGTGACATATTGAGATATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATGCTGATACCAAAATTAGCCAGTGACATATTGAGATATATA  50

seq1  ACAAGACTGAGCTAAATTTAAGATGTTCCTCTCTGAAGTCTTCACCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACTGAGCTAAATTTAAGATGTTCCTCTCTGAAGTCTTCACCAGCT  100

seq1  CCCAGTCTACTTATTCAATAGCTTCTTACCCTAGATACTGTATATACACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCTACTTATTCAATAGCTTCTTACCCTAGATACTGTATATACACC  150

seq1  ATTTTACTTAAGTACCACAGTGACTCAGCTACTGTGCATTAACTCATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTTAAGTACCACAGTGACTCAGCTACTGTGCATTAACTCATCTG  200

seq1  CTAAACTCCAACTCAGTGGTTACCTAATTGCCCAAGGTAAACGATGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTCCAACTCAGTGGTTACCTAATTGCCCAAGGTAAACGATGCAAT  250

seq1  ACAGTAGCCAAGCTCGGCTGAAATGTGGTTTGGCTCCACAACATCTGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGCCAAGCTCGGCTGAAATGTGGTTTGGCTCCACAACATCTGATA  300

seq1  ATGACCACGATTAGTTGCCTGTACCACCCACCACTGTCTTCAGCACCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCACGATTAGTTGCCTGTACCACCCACCACTGTCTTCAGCACCCAC  350

seq1  TTTATACGCATCATCTCCTTAGATGTACCTACTCCTAAGGGAGACAGACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACGCATCATCTCCTTAGATGTACCTACTCCTAAGGGAGACAGACG  400

seq1  TCAGCATCTCTATTTTCATATGAAGAGACTAAGACTTGTAGAGGTCATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATCTCTATTTTCATATGAAGAGACTAAGACTTGTAGAGGTCATGG  450

seq1  AACTTGCAGGAGTGGCCTCTGAAGGTCATGACTCAAAGCCCATTTGGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCAGGAGTGGCCTCTGAAGGTCATGACTCAAAGCCCATTTGGTCT  500

seq1  CCACAATTTATCATACTCTTTTCAGTGCTAATGGTTACCTTTTCAAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATTTATCATACTCTTTTCAGTGCTAATGGTTACCTTTTCAAAACA  550

seq1  AACAAACAAAAAAAAAAGATTCTGTGTGTACAGGAAGACCAGATCAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAAAAAAAAAGATTCTGTGTGTACAGGAAGACCAGATCAAACC  600

seq1  TGATTTTTTATTGGGATAAAAACTTGGAGCTGGAGATCACACAGAGAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTTATTGGGATAAAAACTTGGAGCTGGAGATCACACAGAGAGCA  650

seq1  CTTGCTAGTTCTGCAAAGGATCCCGGTTCGATTCCCAGCAATCAGTGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTAGTTCTGCAAAGGATCCCGGTTCGATTCCCAGCAATCAGTGTGG  700

seq1  TTCATAACCCTCTGTAACTCCAGTTCCAGGGGCCCAGTGCCCTCTTCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAACCCTCTGTAACTCCAGTTCCAGGGGCCCAGTGCCCTCTTCTGA  750

seq1  CCTTCATGGGCATCAAGCAGAACTGTGGTGAACATACAAAACACTAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATGGGCATCAAGCAGAACTGTGGTGAACATACAAAACACTAACAA  800

seq1  AATGAAATTAATGAATCTAATTTTTAAAAAAATAGTAAGCCGGGCGTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATTAATGAATCTAATTTTTAAAAAAATAGTAAGCCGGGCGTGGT  850

seq1  GGCGCACGCCTTTAATCCCAGCACTGGCAAGACAGAAGCAGGTGGATTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCACGCCTTTAATCCCAGCACTGGCAAGACAGAAGCAGGTGGATTTC  900

seq1  TGAGTTCGA-GGCCAGCCTGGTCTACAAAGTGAGTGCCAGG-ACAG-CCA  947
      ||||||||| ||||||||||||||||||||||||||||||| |||| |||
seq2  TGAGTTCGAGGGCCAGCCTGGTCTACAAAGTGAGTGCCAGGAACAGCCCA  950

seq1  GGGCTATATAGAGAAACCCTGTCTCGAAAACAAAAACAAAAAAAACAAAA  997
      ||||||||||||||||||||||||||       ||||||| |    ||||
seq2  GGGCTATATAGAGAAACCCTGTCTCG-------AAACAAACA----AAAA  989

seq1  ACAAAACAAACAAACAAACAAAAAAAAAGAGTAGCTATAATTAAATTTTC  1047
      ||||||| ||||   | |||| |||||||||||||||||  | |||||||
seq2  ACAAAAC-AACA---ACACAACAAAAAAGAGTAGCTATA--TTAATTTTC  1033

seq1  CCTTCCTCGAGGTTTTGCTTTAAGTTCTGGTTAGTCTTAACTGCCAACTT  1097
      |  | ||||||| |||||||| ||| ||   ||||| |||||||| ||||
seq2  C--TTCTCGAGG-TTTGCTTT-AGTCCT--ATAGTC-TAACTGCC-ACTT  1075

seq1  GGCACGGCCTGCAGTCA-TCTGAGAG  1122
       |||| | ||||||||| ||||||||
seq2  -GCAC-GACTGCAGTCATTCTGAGAG  1099