BAC Information

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BAC

Clone NameB6Ng01-177G05
Chromosome5 (Build37)
Map Location 40,701,921 - 40,702,550
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384174, Hs3st1, EG665839
Downstream geneLOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177G05.bB6Ng01-177G05.g
ACCGA004672GA004673
length9921,158
definitionB6Ng01-177G05.b B6Ng01-177G05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctattgattataatcaggatagatctgtgagaagagatcacacct
ggccaaaagttgtcctatagatgtaaatgtatgttattttcctctaagaa
gaaatgagagaacacatgtctcattgtgatgctcagaggcaacaatgtca
ctaaaatcctatggatggaactgtatacatcaaaaacaaggttcacatta
tgaaacatagctgctcctgtgtgctattcctttgacaatgaattgtcttc
tgattgggttctagtgtggttcatgctgtcagattgtaatgcatacaaac
aatgccaaattctcttaacctattttatgcaactcaaaattacatcccac
atgatcagtcttaggaaaaggatacaatgcatcttgttatgttcagagaa
agcagctaaaagtaagtatgttattgtaggaaaaggactgagaacctcaa
tgcttctacttacttttgtcagtaataaagtaacaaggtaggattgtctt
ctgctaaaagtagctgtaatgcaacatttaaattaagtttgacctgaccc
tattactgatgctatgctttgcttcagacagaagcctagcatggctgctc
tttgagagactctacaagcagctgactgaaacatatgtgcatatttacag
cccatcactggactgagtcagggaatcctatggaatagtcagagaaagaa
ctgaatgaactgaaggagatggcagccccagataaagacgaactgtgtca
actaaccttgacacctggtagctctaggggactaagtcaccaaccaaaga
tcatataatgtttggtctatgaccccaggaacctatgtagtagaggactg
acttccttgtcaggccacaataaaagaggatgcttctaatactgtaggca
cttgatgccctagaaaaacaaatgcccagacagcatcctctcataggcaa
agggaggtgggatgggcaagaactctgaaggggtaaaggagg
gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcaggaaatgcaaattaaaacaaccctgagatt
ccacctcataccggtcagaatggctaagatcaaaaattcaggtgacagca
gatgctggtgaggatgtggagaaagcggaacactcctccactgttggtgg
gattgcaagcctgtacaactactctggaaatcagtctggaggcttttcag
aaaattggacataatacgatgggaggatcatgcaatacctctcctgggca
tatatccagaagatgccccaaccggtaagaaggacacatgctctactatg
ttcatagcagcgttatttataatagccagaagctgggaagaacccagata
cccctcatcagaggaatggatacagaaaatgtggtacatttacaaaatgc
agtactacttagttattaaaaagaatgaatttatgaaattcctagctaaa
tggatggacctggagggcatcatcctgagtgaggtaacacaatcacaaag
aaactcacacaatgtgtagtcactgataagtggatattagccccaaaact
taggatacccaagatataagatacaaattgctaaacgcatgaaactcaag
gagaacgaagaccaatgtgtggacactgtgccccttcttagaattgggaa
caaaacacccatggaaggaattacagagacaaagtttgggagctgtgaag
aaaggatggaccatctagagactgccatatgcagggatccattccataat
cagcttccaaactctgacacattgcatacactagcaagattttgctgaag
gacccagatagagctgttctccttgtaagactatgccgggcctagcaaac
acagaagctattggaatggattacaggcccctagtggaggagctagagaa
agtaccaaggaagctatagggatcttgcaatctaagtggacaacattatg
aactaaccagtgctccgggagcctctgacctcatagcctggctatatgtt
tcaaaagatggctattcgccattcactggaaggaaggcatttgactgcca
cttatgtctctagacatggtaaccatggtctaaatggagattgcggtaca
ttggtatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_40701921_40702550
seq2: B6Ng01-177G05.b_51_680 (reverse)

seq1  TTCAGTCAGCTGCTTGTAGAGTCTCTCAAAGAGCAGCCATGCTAGGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCAGCTGCTTGTAGAGTCTCTCAAAGAGCAGCCATGCTAGGCTTC  50

seq1  TGTCTGAAGCAAAGCATAGCATCAGTAATAGGGTCAGGTCAAACTTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAAGCAAAGCATAGCATCAGTAATAGGGTCAGGTCAAACTTAATT  100

seq1  TAAATGTTGCATTACAGCTACTTTTAGCAGAAGACAATCCTACCTTGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTGCATTACAGCTACTTTTAGCAGAAGACAATCCTACCTTGTTA  150

seq1  CTTTATTACTGACAAAAGTAAGTAGAAGCATTGAGGTTCTCAGTCCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTACTGACAAAAGTAAGTAGAAGCATTGAGGTTCTCAGTCCTTTT  200

seq1  CCTACAATAACATACTTACTTTTAGCTGCTTTCTCTGAACATAACAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAATAACATACTTACTTTTAGCTGCTTTCTCTGAACATAACAAGAT  250

seq1  GCATTGTATCCTTTTCCTAAGACTGATCATGTGGGATGTAATTTTGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTATCCTTTTCCTAAGACTGATCATGTGGGATGTAATTTTGAGTT  300

seq1  GCATAAAATAGGTTAAGAGAATTTGGCATTGTTTGTATGCATTACAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAATAGGTTAAGAGAATTTGGCATTGTTTGTATGCATTACAATCT  350

seq1  GACAGCATGAACCACACTAGAACCCAATCAGAAGACAATTCATTGTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCATGAACCACACTAGAACCCAATCAGAAGACAATTCATTGTCAAA  400

seq1  GGAATAGCACACAGGAGCAGCTATGTTTCATAATGTGAACCTTGTTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGCACACAGGAGCAGCTATGTTTCATAATGTGAACCTTGTTTTTG  450

seq1  ATGTATACAGTTCCATCCATAGGATTTTAGTGACATTGTTGCCTCTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATACAGTTCCATCCATAGGATTTTAGTGACATTGTTGCCTCTGAGC  500

seq1  ATCACAATGAGACATGTGTTCTCTCATTTCTTCTTAGAGGAAAATAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAATGAGACATGTGTTCTCTCATTTCTTCTTAGAGGAAAATAACAT  550

seq1  ACATTTACATCTATAGGACAACTTTTGGCCAGGTGTGATCTCTTCTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTACATCTATAGGACAACTTTTGGCCAGGTGTGATCTCTTCTCACA  600

seq1  GATCTATCCTGATTATAATCAATAGAATTC  630
      ||||||||||||||||||||||||||||||
seq2  GATCTATCCTGATTATAATCAATAGAATTC  630