BAC Information

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BAC

Clone NameB6Ng01-177M16
Chromosome5 (Build37)
Map Location 45,805,785 - 45,968,985
singlet/doubletdoublet
Overlap geneQdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik
Upstream geneLdb2, LOC100041481, LOC100040737
Downstream gene9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576, EG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177M16.bB6Ng01-177M16.g
ACCGA004963GA004964
length1,1351,132
definitionB6Ng01-177M16.b B6Ng01-177M16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,967,837 - 45,968,985)(45,805,785 - 45,806,409)
sequence
gaattcactctgtagccaaatttgtgctcaagagacttgaccccttgact
ttggatcaaaataaacctcttttctttataacttagtcatcggcactgtg
ttattagcaacaataaacagacttaggatagagtggctccttcacctttc
ttccccttccttcatgcctgcctttcccacctttgttcatttgaagtgga
ggaggtttggccaagtagcccaggctgccctccaactctggccttagctt
cctatgatttcagttgtgcaccacaactcactcccagctgtttctttcct
tacattgccaataactgtggacattgtaggcaaaaagccaggaaaaaaga
ctcagtcctgcttgtgtcctattagctgtgggatttgctccctgtaaaac
ctacggctgggtatataagagttctgtggaaactgaattcaggaaagcac
tctgaagttgacaaatcctcagtgcatgaatccccttcccaggggtgatg
tgactcatgtatgtgaaagcattggtctctttacttgtatccttgatctt
gtggttgcttttcccctctccctgaggagagagaacatgcatgcttctat
tgaaatcccatattgctttgtgccctcctgtcctctgcactttggtgact
tagctattttctcccagtagcccacgtgaccctgaatccatgaggaaatt
tattaatgctaaaagttactgctgacatcagttgacatctccacctgccg
gggttttatttttcactctagggccatttgtcaaggcaccgtggaaactg
tgattgattgtatttaccagaaaggtgtgttgcataacattaacaagtgc
ctttcctttatgccaaaagtcatgttttcactggctggtacagtgtgact
agtgtcttggcagatttagtttccagaccagtgagcataataaactagaa
tttgttcaaatttctgtgatgagaaactaataagtgaaattattatgaga
agagagggcaatgttttgcttaggatttaggtggcaccttatttatttca
cttctttgttagcaaggtacttatatattgtcttagagcaagcgctctca
cagaattcctaagaagatatgcatgggtgactgaa

gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggattgggcgaagtg
ggtgttctgggttctgatgatggtgagtggtcctggcttctgttagtagg
attcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaagagattgttcctctgttgattttgttaccctcta
tcagcaggcgtgggagacaagctctcttctctgagtttcagtggtcagag
cagtctctgtaggcaagctctcctctttcagggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccagaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagt
cgaagatgtcgccgcctgagaagctctgtggctcttgtccggaaggaggc
cggccgtctggagctgaggatggcgctgcctcagaagctctgtggctctt
gccgggaaggtggctggttgtctggagctgaagatggcgccacccagaag
ctctgcgactctcgcccgtcccagaaatggctggcactctgtattccaca
cggtcacccgtgcagcctgccctccgcggagtcccggagccaagaaggct
cccgccggcgcctgtgccacaaacctctcagccgggcagacccccgtgct
ctcaccaggaaaggtggccggctgtctggagctgaagatggcgccgccca
gaagctctgcgactctcgcccgtcccagaaatggctggcactctgtattc
cacacggttcacccgtgcagcctgccctccgcggagtcccggagccaaga
aggctcccgccggcgcctgtgccacaaacctctcagggccgggcagaccc
ccgtgctcttcaccaggaagtttgcggctgtctggagcttcgccaagtga
tttttttaaaaggaaatgaaaataatactgcaggcccctggagctgtctg
gaaggccatgcctctatgtcattccactggaagaacattaaaggtatggt
taggctggaactgggaaaaagagctgggagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_45967837_45968985
seq2: B6Ng01-177M16.b_45_1179 (reverse)

seq1  TTCAGTCAACCCATGC-TATCTTCTTTGGGATTTCCTGTTTGAGAGCGCT  49
      ||||||| |||||||| ||||||||| || |||  |||  ||||||||||
seq2  TTCAGTC-ACCCATGCATATCTTCTTAGGAATT--CTG--TGAGAGCGCT  45

seq1  TGCTTCTTAAAGACAATATATAAGTTACCCTTTGCTACCAAAGAAGTTGA  99
      ||| |||  ||||||||||||||| ||||  |||||| |||||||| |||
seq2  TGC-TCT--AAGACAATATATAAG-TACC--TTGCTAACAAAGAAG-TGA  88

seq1  AATAAATTAAGGTGCCACCTAAATCCCTTAGCAAAACATTGCCCTCTC-T  148
      |||||| ||||||||||||||||| ||| ||||||||||||||||||| |
seq2  AATAAA-TAAGGTGCCACCTAAAT-CCTAAGCAAAACATTGCCCTCTCTT  136

seq1  CTCATAATAATTTCACTTATTAGTTTCTCATTCACAGAAATTTTGAACAA  198
      |||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  CTCATAATAATTTCACTTATTAGTTTCTCA-TCACAGAAA-TTTGAACAA  184

seq1  ATTCTAGTTTATTATGCTCACTGGTCTGGAAACTAAATCTGCCAAGACAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGTTTATTATGCTCACTGGTCTGGAAACTAAATCTGCCAAGACAC  234

seq1  TAGTCACACTGTACCAGCCAGTGAAAACATGACTTTTGGCATAAAGGAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACACTGTACCAGCCAGTGAAAACATGACTTTTGGCATAAAGGAAA  284

seq1  GGCACTTGTTAATGTTATGCAACACACCTTTCTGGTAAATACAATCAATC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTGTTAATGTTATGCAACACACCTTTCTGGTAAATACAATCAATC  334

seq1  ACAGTTTCCACGGTGCCTTGACAAATGGCCCTAGAGTGAAAAATAAAACC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTCCACGGTGCCTTGACAAATGGCCCTAGAGTGAAAAATAAAACC  384

seq1  CCGGCAGGTGGAGATGTCAACTGATGTCAGCAGTAACTTTTAGCATTAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCAGGTGGAGATGTCAACTGATGTCAGCAGTAACTTTTAGCATTAAT  434

seq1  AAATTTCCTCATGGATTCAGGGTCACGTGGGCTACTGGGAGAAAATAGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCTCATGGATTCAGGGTCACGTGGGCTACTGGGAGAAAATAGCT  484

seq1  AAGTCACCAAAGTGCAGAGGACAGGAGGGCACAAAGCAATATGGGATTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACCAAAGTGCAGAGGACAGGAGGGCACAAAGCAATATGGGATTTC  534

seq1  AATAGAAGCATGCATGTTCTCTCTCCTCAGGGAGAGGGGAAAAGCAACCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAGCATGCATGTTCTCTCTCCTCAGGGAGAGGGGAAAAGCAACCA  584

seq1  CAAGATCAAGGATACAAGTAAAGAGACCAATGCTTTCACATACATGAGTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCAAGGATACAAGTAAAGAGACCAATGCTTTCACATACATGAGTC  634

seq1  ACATCACCCCTGGGAAGGGGATTCATGCACTGAGGATTTGTCAACTTCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACCCCTGGGAAGGGGATTCATGCACTGAGGATTTGTCAACTTCAG  684

seq1  AGTGCTTTCCTGAATTCAGTTTCCACAGAACTCTTATATACCCAGCCGTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTCCTGAATTCAGTTTCCACAGAACTCTTATATACCCAGCCGTA  734

seq1  GGTTTTACAGGGAGCAAATCCCACAGCTAATAGGACACAAGCAGGACTGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTACAGGGAGCAAATCCCACAGCTAATAGGACACAAGCAGGACTGA  784

seq1  GTCTTTTTTCCTGGCTTTTTGCCTACAATGTCCACAGTTATTGGCAATGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTTTCCTGGCTTTTTGCCTACAATGTCCACAGTTATTGGCAATGT  834

seq1  AAGGAAAGAAACAGCTGGGAGTGAGTTGTGGTGCACAACTGAAATCATAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGAAACAGCTGGGAGTGAGTTGTGGTGCACAACTGAAATCATAG  884

seq1  GAAGCTAAGGCCAGAGTTGGAGGGCAGCCTGGGCTACTTGGCCAAACCTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAAGGCCAGAGTTGGAGGGCAGCCTGGGCTACTTGGCCAAACCTC  934

seq1  CTCCACTTCAAATGAACAAAGGTGGGAAAGGCAGGCATGAAGGAAGGGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTTCAAATGAACAAAGGTGGGAAAGGCAGGCATGAAGGAAGGGGA  984

seq1  AGAAAGGTGAAGGAGCCACTCTATCCTAAGTCTGTTTATTGTTGCTAATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTGAAGGAGCCACTCTATCCTAAGTCTGTTTATTGTTGCTAATA  1034

seq1  ACACAGTGCCGATGACTAAGTTATAAAGAAAAGAGGTTTATTTTGATCCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTGCCGATGACTAAGTTATAAAGAAAAGAGGTTTATTTTGATCCA  1084

seq1  AAGTCAAGGGGTCAAGTCTCTTGAGCACAAATTTGGCTACAGAGTGAATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAAGGGGTCAAGTCTCTTGAGCACAAATTTGGCTACAGAGTGAATT  1134

seq1  C  1149
      |
seq2  C  1135


seq1: chr5_45805785_45806409
seq2: B6Ng01-177M16.g_561_1195

seq1  GGCCGGCCGTCTGGAGCTGAGGATGGCGCTGCCTCAGAAGCTCTGTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGGCCGTCTGGAGCTGAGGATGGCGCTGCCTCAGAAGCTCTGTGGCT  50

seq1  CTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAAGATGGCGCCACCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAAGATGGCGCCACCCAG  100

seq1  AAGCTCTGCGACTCTCGCCCGTCCCAGAAATGGCTGGCACTCTGTATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTGCGACTCTCGCCCGTCCCAGAAATGGCTGGCACTCTGTATTCC  150

seq1  ACACGGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCCGGAGCCAAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCCGGAGCCAAGAAG  200

seq1  GCTCCCGCCGGCGCCTGTGCCACAAACCTCTCAGGCCGGGCAGACCCCCG  250
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCTCCCGCCGGCGCCTGTGCCACAAACCTCTCA-GCCGGGCAGACCCCCG  249

seq1  TGCTCTCACCAGG-AAGGTGGCCGGCTGTCTGGAGCTGAAGATGGCGCCG  299
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCACCAGGAAAGGTGGCCGGCTGTCTGGAGCTGAAGATGGCGCCG  299

seq1  CCCAGAAGCTCTGCGACTCTCGCCCGTCCCAGAAATGGCTGGCACTCTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGCTCTGCGACTCTCGCCCGTCCCAGAAATGGCTGGCACTCTGT  349

seq1  ATTCCACACGG-TCACCCGTGCAGCCTGCCCTCCGCGGAGTCCCGGAGCC  398
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACACGGTTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCCGGAGCC  399

seq1  AAGAAGGCTCCCGCCGGCGCCTGTGCCACAAACCTCTCA-GGCCGGGCAG  447
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGAAGGCTCCCGCCGGCGCCTGTGCCACAAACCTCTCAGGGCCGGGCAG  449

seq1  ACCCCCGTGCTC-TCACCAGGAAGGTGGCCGGCTGTCTGGAGC-TCG-CA  494
      |||||||||||| ||||||||||| | | |||||||||||||| ||| ||
seq2  ACCCCCGTGCTCTTCACCAGGAAGTTTG-CGGCTGTCTGGAGCTTCGCCA  498

seq1  GGTGATTTTTTTAAAAAGGAAAATGAAATAATAACTGCAGGCCCCT-GAG  543
       ||||||||||| |||||||||   ||||||| ||||||||||||| |||
seq2  AGTGATTTTTTT-AAAAGGAAATGAAAATAAT-ACTGCAGGCCCCTGGAG  546

seq1  CTGTCTGGAA-GCCATGCCTCTATGTCA-TCCACT-GAAGACCATT-AAT  589
      |||||||||| ||||||||||||||||| |||||| ||||| |||| || 
seq2  CTGTCTGGAAGGCCATGCCTCTATGTCATTCCACTGGAAGAACATTAAAG  596

seq1  GTAT-GTTAGGCTGG-ACTGGG-AGAAGAGCTGGGAGAC  625
      |||| |||||||||| |||||| | ||||||||||||||
seq2  GTATGGTTAGGCTGGAACTGGGAAAAAGAGCTGGGAGAC  635


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