BAC Information

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BAC

Clone NameB6Ng01-178C13
Chromosome5 (Build37)
Map Location 108,683,613 - 108,823,953
singlet/doubletdoublet
Overlap geneDr1, Pigg, Pde6b
Upstream geneTgfbr3, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614
Downstream geneAtp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178C13.bB6Ng01-178C13.g
ACCGA005229GA005230
length982894
definitionB6Ng01-178C13.b B6Ng01-178C13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,822,876 - 108,823,953)(108,683,613 - 108,684,508)
sequence
gaattctggctttgagtgccctacttttccaattatcaagttataatagt
aggtctggggaccaggggattggggattactgcctcttggctttcttgct
tcaaggttcgtatgtctgagattatttatatgagaaatcatttctctaat
tgtatttgtataagtcaaatttgataaaatgaaacttacctaacaaatct
ttttggaaaaaaaaatcagtgtagctaaaagaattacttctaaagaaaaa
atatctgttattatactataactgctcactaccttttaattttcttgctt
tcaattcttgaggtcaacaattactcttttctaaagatctacagagctag
agcagtaccgcttgatgcaaatttcaaatatagagtcttgaaaatggtct
gatgtcacaggtaaagcagaaatggcaaaagagtatgaaaaaactacagt
cagaataagaccatatcataagactctgacccttacttttctttgtgaga
aggatgatgatattgttaagatatacatacaagccaggcgtggtggcaca
cacctttaataccagcagtcaggaggcaggggcaggtggatttctgagtt
caaggctagcctggtctacaaagtgagttccaggacagccagggctacac
agaaaaatcttgtcttgaaaaacaaaacaaaacaaaacaaaacaaaacaa
aacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaaccagcccc
acaaaacaagggaaaggctcagttaccatagtaagtcccacaaactcctc
tgtggtcatctgatttgtttcattggttaccctttgagcttaggtttgtg
taatagatgccaaacaacattttgcttcactcatagacctgctcagcagt
tatgagagaagcctcatcctgtagcagatgggaataaatacagagaccca
tagacagtgtgcagggggaggagagggggaga
gaattccaggacagccagagctatacagagaaaccctgtctcgaaaaaaa
aaaaaaaaaaaaagtgtatccggagccatcaagatgttcaaaacatgtat
ctaaaaatacttatttggtggcctagcacaaaaccagctctctctctctc
tctctccctctctctctctctctctctctctctctctctccttctttccc
ttgttctcaaaaataagcatggaacctggggtggaaacagagagaattga
gtcttttttatattcctgggatgagggagagaagggaagagaaagagaaa
gtccttgtcttaaaaaaaaaaaaaaaaaaaaacccagagagagacagtag
taattatcagattgctcttcaagatttctaatgtgggccaggtgcagtgg
tgcagacttttgatcccaatacttcgcaggcagaggaaggtggatctctg
tgagtttgagtccagccaggtttatgtagtgaatcctaattgcaatcaat
caatcaatcaatcaatcaatcatgtgggataaagggaagtcagtagtagg
tagttagatccaaagcttttatgttcaaaggactcacagaaagatactac
tgtgattacaaaagagcaaagctataaaaaatgtggaaggtacatatata
gagagaagctgaggggctaatgccagcaggggactcgggaggagaaaggt
gagaaccatgattacaattatgatttaggttttaaattgaccccacaggg
ccttgtgttgttctcttggttcccagatggagacactattttggaaggtt
atagaaactagagatagagaaggttgctgggggaggagaacaacgctagt
gggatttctccctagcagctttctcttaccatggtataaacgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_108822876_108823953
seq2: B6Ng01-178C13.b_43_1024 (reverse)

seq1  TCTCCCCCTCCCTCTTCCTCGCCCCCTCCTTCTCCCCCTCTCCACCTCCC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCTCTCCCTCTCTCCCTCCTTCTCCCCCTCTCTCCCCCCTCTCCCTCTCC  100
                                                   |||||
seq2  ---------------------------------------------TCTCC  5

seq1  CCCTTCTCCTCCCCCTGCACACTGTCTATGGGTCTCTGTATTTATTCCCA  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCC-TCTCCTCCCCCTGCACACTGTCTATGGGTCTCTGTATTTATTCCCA  54

seq1  TCTGCTACAGGATGAGGCTTCTCTCATAACTGCTGAGCAGGTCTATGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTACAGGATGAGGCTTCTCTCATAACTGCTGAGCAGGTCTATGAGT  104

seq1  GAAGCAAAATGTTGTTTGGCATCTATTACACAAACCTAAGCTCAAAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAAATGTTGTTTGGCATCTATTACACAAACCTAAGCTCAAAGGGT  154

seq1  AACCAATGAAACAAATCAGATGACCACAGAGGAGTTTGTGGGACTTACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATGAAACAAATCAGATGACCACAGAGGAGTTTGTGGGACTTACTA  204

seq1  TGGTAACTGAGCCTTTCCCTTGTTTTGTGGGGCTGGTTTTGTTTTGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAACTGAGCCTTTCCCTTGTTTTGTGGGGCTGGTTTTGTTTTGTTTT  254

seq1  GTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTT  304

seq1  GTTTTGTTTTTCAAGACAAGATTTTTCTGTGTAGCCCTGGCTGTCCTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTTCAAGACAAGATTTTTCTGTGTAGCCCTGGCTGTCCTGGA  354

seq1  ACTCACTTTGTAGACCAGGCTAGCCTTGAACTCAGAAATCCACCTGCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTTTGTAGACCAGGCTAGCCTTGAACTCAGAAATCCACCTGCCCC  404

seq1  TGCCTCCTGACTGCTGGTATTAAAGGTGTGTGCCACCACGCCTGGCTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCTGACTGCTGGTATTAAAGGTGTGTGCCACCACGCCTGGCTTGT  454

seq1  ATGTATATCTTAACAATATCATCATCCTTCTCACAAAGAAAAGTAAGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATCTTAACAATATCATCATCCTTCTCACAAAGAAAAGTAAGGGT  504

seq1  CAGAGTCTTATGATATGGTCTTATTCTGACTGTAGTTTTTTCATACTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCTTATGATATGGTCTTATTCTGACTGTAGTTTTTTCATACTCTT  554

seq1  TTGCCATTTCTGCTTTACCTGTGACATCAGACCATTTTCAAGACTCTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATTTCTGCTTTACCTGTGACATCAGACCATTTTCAAGACTCTATA  604

seq1  TTTGAAATTTGCATCAAGCGGTACTGCTCTAGCTCTGTAGATCTTTAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATTTGCATCAAGCGGTACTGCTCTAGCTCTGTAGATCTTTAGAA  654

seq1  AAGAGTAATTGTTGACCTCAAGAATTGAAAGCAAGAAAATTAAAAGGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAATTGTTGACCTCAAGAATTGAAAGCAAGAAAATTAAAAGGTAG  704

seq1  TGAGCAGTTATAGTATAATAACAGATATTTTTTCTTTAGAAGTAATTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGTTATAGTATAATAACAGATATTTTTTCTTTAGAAGTAATTCTT  754

seq1  TTAGCTACACTGATTTTTTTTTCCAAAAAGATTTGTTAGGTAAGTTTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTACACTGATTTTTTTTTCCAAAAAGATTTGTTAGGTAAGTTTCAT  804

seq1  TTTATCAAATTTGACTTATACAAATACAATTAGAGAAATGATTTCTCATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAAATTTGACTTATACAAATACAATTAGAGAAATGATTTCTCATA  854

seq1  TAAATAATCTCAGACATACGAACCTTGAAGCAAGAAAGCCAAGAGGCAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATCTCAGACATACGAACCTTGAAGCAAGAAAGCCAAGAGGCAGT  904

seq1  AATCCCCAATCCCCTGGTCCCCAGACCTACTATTATAACTTGATAATTGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCAATCCCCTGGTCCCCAGACCTACTATTATAACTTGATAATTGG  954

seq1  AAAAGTAGGGCACTCAAAGCCAGAATTC  1078
      ||||||||||||||||||||||||||||
seq2  AAAAGTAGGGCACTCAAAGCCAGAATTC  982

seq1: chr5_108683613_108684508
seq2: B6Ng01-178C13.g_66_959

seq1  GAATTCCAGGACAGCCAGAGCTATACAGAGAAACCCTGTCTCGAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGAGCTATACAGAGAAACCCTGTCTCGAAAAAAA  50

seq1  AAAAAAAAAAAAAGTGTATCCGGAGCCATCAAGATGTTCAAAACATGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAGTGTATCCGGAGCCATCAAGATGTTCAAAACATGTAT  100

seq1  CTAAAAATACTTATTTGGTGGCCTAGCACAAAACCAGCTCTCTCTCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATACTTATTTGGTGGCCTAGCACAAAACCAGCTCTCTCTCTCTC  150

seq1  TCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTCTTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTCTTTCCC  200

seq1  TTGTTCTCAAAAATAAGCATGGAACCTGGGGTGGAAACAGAGAGAATTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTCAAAAATAAGCATGGAACCTGGGGTGGAAACAGAGAGAATTGA  250

seq1  GTCTTTTTTATATTCCTGGGATGAGGGAGAGAAGGGAAGAGAAAGAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTTTATATTCCTGGGATGAGGGAGAGAAGGGAAGAGAAAGAGAAA  300

seq1  GTCCTTGTCTTAAAAAAAAAAAAAAAAAAAAACCCAGAGAGAGACAGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGTCTTAAAAAAAAAAAAAAAAAAAAACCCAGAGAGAGACAGTAG  350

seq1  TAATTATCAGATTGCTCTTCAAGATTTCTAATGTGGGCCAGGTGCAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATCAGATTGCTCTTCAAGATTTCTAATGTGGGCCAGGTGCAGTGG  400

seq1  TGCAGACTTTTGATCCCAATACTTCGCAGGCAGAGGAAGGTGGATCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACTTTTGATCCCAATACTTCGCAGGCAGAGGAAGGTGGATCTCTG  450

seq1  TGAGTTTGAGTCCAGCCAGGTTTATGTAGTGAATCCTAATTGCAATCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTGAGTCCAGCCAGGTTTATGTAGTGAATCCTAATTGCAATCAAT  500

seq1  CAATCAATCAATCAATCAATCATGTGGGATAAAGGGAAGTCAGTAGTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAATCAATCAATCAATCATGTGGGATAAAGGGAAGTCAGTAGTAGG  550

seq1  TAGTTAGATCCAAAGCTTTTATGTTCAAAGGACTCACAGAAAGATACTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGATCCAAAGCTTTTATGTTCAAAGGACTCACAGAAAGATACTAC  600

seq1  TGTGATTACAAAAGAGCAAAGCTATAAAAAATGTGGAAGGTACATATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTACAAAAGAGCAAAGCTATAAAAAATGTGGAAGGTACATATATA  650

seq1  GAGAGAAGCTGAGGGGCTAATGCCAGCAGGGGACTCGGGAGGAGAAAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAGCTGAGGGGCTAATGCCAGCAGGGGACTCGGGAGGAGAAAGGT  700

seq1  GAGAACCATGATTACAATTATGATTTAGGTTTTAAATTGACCCCACAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCATGATTACAATTATGATTTAGGTTTTAAATTGACCCCACAGGG  750

seq1  CCTTGTGTTGTTCTCTTGGTTCCCAGATGGAGACACTATTTTGGAAGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGTTGTTCTCTTGGTTCCCAGATGGAGACACTATTTTGGAAGGTT  800

seq1  ATAGAAACTAGAGATAGAGGAAGGTTGCTGGGGGAGGAGAACAACGCTAG  850
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATAGAAACTAGAGATAGA-GAAGGTTGCTGGGGGAGGAGAACAACGCTAG  849

seq1  TGGGTATTTCATCCCTAGCAG-TTTCGCTTACCATGTAATAAACGGC  896
      |||| ||||| |||||||||| |||| |||||||||  ||||||| |
seq2  TGGG-ATTTC-TCCCTAGCAGCTTTCTCTTACCATGGTATAAACGTC  894