BAC Information

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BAC

Clone NameB6Ng01-178H13
Chromosome5 (Build37)
Map Location 95,061,931 - 95,062,971
singlet/doubletsinglet
Overlap genenone
Upstream geneC87414, LOC666075, LOC666077, LOC666081, EG665802, LOC100040408, LOC100040981, EG622719, LOC100041003, BC061212, EG622744, LOC100041032, LOC100041042, LOC624421, AA792892, LOC665521, LOC665551, LOC100041102, LOC665560, LOC100041115, LOC624507
Downstream geneLOC621203, LOC100041153, LOC665499, LOC624698, LOC100041179, LOC624655, LOC100041166, LOC665469, LOC622894, EG666121, LOC666125, EG666133, LOC100041296, LOC100041253, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178H13.bB6Ng01-178H13.g
ACCGA005450GA005451
length6991,041
definitionB6Ng01-178H13.b B6Ng01-178H13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgaaattcctaggcaaatggatggaactggagggtatcatcca
gagtgaagtaacccattcacaatggaactcgcacaatatgtactcactga
taagtggatattagcccaaaacctaggatacccaagatataagatacaac
ttgccaaacacataaaattcaagaagaacgaagaccaaagtgtggacact
ttaccctttcttggaaatgggaacaaaaaacccatggaaggagttacaga
gacaaaatttggagctgtgacgaaaggatggaccatctagtgattgccat
atgcagggatccatcccataatcagcttccaaatgctgacaccattgcac
acactagcaagattttgctgaaaggacccagatatagctctctcttgtga
gactatgccggggcctagcaaacacagaagtggatggtcacagtcagcta
ttggttgggtcactcggcccccaatggaggagctagagaaattacccaag
gagctaaagggaactgcgaccctataggtggaacaacattatgaactaac
cagtaccccggagctcttgtctttagctgcatatgtatcaaaagatggcc
tagtcggccatcactgcaaagagagacccattggatttgcaaactttata
tgccccagtacaggggaacgccagggccaaaaagcggaatggggggggg
gaattctcacctgagaaatagcgaatggcagagaagcaccttaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaactctgaga
ttccacctcaaaccagtcaggatggctgagatcaaaaattcattttccat
tctttacgctgccattttttcctattgatgctgtcttttgccttacagag
gatattcagtttcatgaagcccatttattgttgatcttaatgcataagct
atggttgttctgtgcagtaattagtcaacttttacaataactttgagagc
cctgacaccattaatgatattcttcaaccagtagcatttaggagtggagg
atatcaaactatttacagtactagtgttttgttttcctctaatctaattg
tgactgtgccccttttcttttctcttgaagtaaaaagtatttcatatgca
agagccaccatgagctatagcctaaaaaggaagctcctgttactcgaaac
tagggatcactgagcaagagtgagggagagtgactggcatttctttcttt
tcctttctttccttttctttttttgatattatatttattagatatttttt
atttacatttcaaatgttaccccctttcctagtttctcctccaaaaatcc
cctatctcctacccctccccatggtcaagagcccacccactcccattgct
tgtcctggcaatcccctatattgaggcagagagtcttcccaggaccaagg
gtctctcctcccattgatgactgactaggcaatcctctgctacaaatata
gctagagcctcaagttccaccatgtgttttctttggttggtggtatagct
ccaagtagctctaagtgtactggttagttcatattgatgttccttctatg
aggcttcagtccccttcagctccctggctgttttcctctggctcatccag
tggcgacctttgtgctccgtccatagaaactatgagcattcacttctgta
ttttgccaggcactggcagagcctcgcagagacagctatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_95061931_95062971
seq2: B6Ng01-178H13.g_64_1104

seq1  GAATTCTCACCTGAGAAATAGCGAATGGCAGAGAAGCACCTTAAAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGAAATAGCGAATGGCAGAGAAGCACCTTAAAAAAAT  50

seq1  GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACTCTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACTCTGAGA  100

seq1  TTCCACCTCAAACCAGTCAGGATGGCTGAGATCAAAAATTCATTTTCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCTCAAACCAGTCAGGATGGCTGAGATCAAAAATTCATTTTCCAT  150

seq1  TCTTTACGCTGCCATTTTTTCCTATTGATGCTGTCTTTTGCCTTACAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACGCTGCCATTTTTTCCTATTGATGCTGTCTTTTGCCTTACAGAG  200

seq1  GATATTCAGTTTCATGAAGCCCATTTATTGTTGATCTTAATGCATAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCAGTTTCATGAAGCCCATTTATTGTTGATCTTAATGCATAAGCT  250

seq1  ATGGTTGTTCTGTGCAGTAATTAGTCAACTTTTACAATAACTTTGAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTTCTGTGCAGTAATTAGTCAACTTTTACAATAACTTTGAGAGC  300

seq1  CCTGACACCATTAATGATATTCTTCAACCAGTAGCATTTAGGAGTGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACACCATTAATGATATTCTTCAACCAGTAGCATTTAGGAGTGGAGG  350

seq1  ATATCAAACTATTTACAGTACTAGTGTTTTGTTTTCCTCTAATCTAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAACTATTTACAGTACTAGTGTTTTGTTTTCCTCTAATCTAATTG  400

seq1  TGACTGTGCCCCTTTTCTTTTCTCTTGAAGTAAAAAGTATTTCATATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTGCCCCTTTTCTTTTCTCTTGAAGTAAAAAGTATTTCATATGCA  450

seq1  AGAGCCACCATGAGCTATAGCCTAAAAAGGAAGCTCCTGTTACTCGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCACCATGAGCTATAGCCTAAAAAGGAAGCTCCTGTTACTCGAAAC  500

seq1  TAGGGATCACTGAGCAAGAGTGAGGGAGAGTGACTGGCATTTCTTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATCACTGAGCAAGAGTGAGGGAGAGTGACTGGCATTTCTTTCTTT  550

seq1  TCCTTTCTTTCCTTTTCTTTTTTTGATATTATATTTATTAGATATTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTTTCCTTTTCTTTTTTTGATATTATATTTATTAGATATTTTTT  600

seq1  ATTTACATTTCAAATGTTACCCCCTTTCCTAGTTTCTCCTCCAAAAATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATTTCAAATGTTACCCCCTTTCCTAGTTTCTCCTCCAAAAATCC  650

seq1  CCTATCTCCTACCCCTCCCCATGGTCAAGAGCCCACCCACTCCCATTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTCCTACCCCTCCCCATGGTCAAGAGCCCACCCACTCCCATTGCT  700

seq1  TGTCCTGGCAATCCCCTATATTGAGGCAGAGAGTCTTCCCAGGACCAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGCAATCCCCTATATTGAGGCAGAGAGTCTTCCCAGGACCAAGG  750

seq1  GTCTCTCCTCCCATTGATGACTGACTAGGCAATCCTCTGCTACAAATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCTCCCATTGATGACTGACTAGGCAATCCTCTGCTACAAATATA  800

seq1  GCTAGAGCCTCAAGTTCCACCATGTGTTTTCTTTGGTTGGTGGTATAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGCCTCAAGTTCCACCATGTGTTTTCTTTGGTTGGTGGTATAGCT  850

seq1  CCAAGTAGCTCTAAGTGTACTGGTTAGTTCATATTGATGTTCCTTCTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTAGCTCTAAGTGTACTGGTTAGTTCATATTGATGTTCCTTCTATG  900

seq1  AGGCTTCAGTCCCCTTCAGCTCCCTGGCTGTTTT-CTCTGGCTCATCCAG  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGGCTTCAGTCCCCTTCAGCTCCCTGGCTGTTTTCCTCTGGCTCATCCAG  950

seq1  TGGCGACC-TTGTGCTCCGTCCAATAGAAAACTATGAGCATTCACTTCTG  998
      |||||||| ||||||||||||| |||| ||||||||||||||||||||||
seq2  TGGCGACCTTTGTGCTCCGTCC-ATAG-AAACTATGAGCATTCACTTCTG  998

seq1  TA-TTTGCCAGGCACTGGCAGAGCCTCGCAGGAGACAGCTATAT  1041
      || ||||||||||||||||||||||||||| |||||||||||||
seq2  TATTTTGCCAGGCACTGGCAGAGCCTCGCA-GAGACAGCTATAT  1041