BAC Information

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BAC

Clone NameB6Ng01-178N08
Chromosome5 (Build37)
Map Location 68,234,608 - 68,355,483
singlet/doubletdoublet
Overlap geneAtp8a1, EG330097
Upstream gene3732412D22Rik, LOC624662, Phox2b, Tmem33, Slc30a9, EG666938, C330024D21Rik, D830007B15Rik, LOC100042458
Downstream geneEG666977, AY616753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178N08.bB6Ng01-178N08.g
ACCGA005711GA005712
length2181,013
definitionB6Ng01-178N08.b B6Ng01-178N08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,234,608 - 68,234,831)(68,354,477 - 68,355,483)
sequence
ctcagaatgcacttcagaaccagaaccccaggaggcacctgggtgggtcc
acacccacagtttcttcagggcaccacctaagaagcttcgttttcaggca
ctgggatctcatttcgtaaagtgaaaataaaaaacaacaacaaaagctat
tgatcgagaaccctctcttcaaaaacaaagtagagagtgagtgtgtgtgt
gtgtgtgtgtgtgtgtgt
gaattcactgctggttcacatccacatgactcctatctaggccaactatt
ccattcacccagactatttctctgttcttgtacaccagtagagctatatc
aggtttgctaccatgctattacccttgaacttagcaataagatggtattc
tcctatttttatgcaatttcccaaacaccaatgaaaattgcttttgaatc
ttctaataacattttctattctattttcaatttagatgttaaacactacc
cctttggctttcctaccagggaatgagttctcctagccaattacaggttg
tccaccaacactggttgactaagagcattcaatccataaatactgagtaa
aaaccaccccaacttaaaagatttcttaaacactaacattgagtttaaac
cacagcagaatgaactctgtagttaacgacagagcctgctggcccaagaa
gagaaaggcactctcaaaaactcctactttgaaagtaagtcctatccttt
cattaaaaattaaaaataggttggagtctgatggtcagagtttgatatct
gggacccacatagaagaagaagaaagctgactccctcggcttgtcttctg
gcttccacaatcacactatagaatgtgaagccatgtgtgtgtgcacctgc
acataaataaaataaatagatgttgtttaattaaccaacattggctagga
ggcagaaaattcgtttcatcagggatttggcccctggtaggacattcata
ttccagtagatggtcctacacccatgaatgtacagggagcattgtgagga
ctcaaaggatttttacttttaaggtcatgaagttgggaggacaagtagtg
gagtggagaaagggaatttaaaggaagtgagagacaattgtttaaacatt
atatgtatatcttcagtaaaaaataaaagtataaataaccatttacttta
ctgtatttatatcacatcaatatgcattacttgttaatagctattgttcc
ttttgtaatatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_68234608_68234831
seq2: B6Ng01-178N08.b_45_268

seq1  GAATTCCTCAGAATGCACTTCAGAACCAGAACCCCAGGAGGCACCTGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGAATGCACTTCAGAACCAGAACCCCAGGAGGCACCTGGGT  50

seq1  GGGTCCACACCCACAGTTTCTTCAGGGCACCACCTAAGAAGCTTCGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCACACCCACAGTTTCTTCAGGGCACCACCTAAGAAGCTTCGTTTT  100

seq1  CAGGCACTGGGATCTCATTTCGTAAAGTGAAAATAAAAAACAACAACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACTGGGATCTCATTTCGTAAAGTGAAAATAAAAAACAACAACAAA  150

seq1  AGCTATTGATCGAGAACCCTCTCTTCAAAAACAAAGTAGAGAGTGAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTGATCGAGAACCCTCTCTTCAAAAACAAAGTAGAGAGTGAGTGT  200

seq1  GTGTGTGTGTGTGTGTGTGTGTGT  224
      ||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGT  224

seq1: chr5_68354477_68355483
seq2: B6Ng01-178N08.g_66_1078 (reverse)

seq1  TGATATTAC-AAAGGAAC-ATAGCTATT-ACAAGTAATGGCTATTGATGT  47
      ||||||||| |||||||| ||||||||| ||||||||||  |||||||||
seq2  TGATATTACAAAAGGAACAATAGCTATTAACAAGTAATGCATATTGATGT  50

seq1  GATATAAATACAGTAAAGT-AATTGTTATTTATACTTT--ATTTTTACTG  94
      ||||||||||||||||||| ||| ||||||||||||||   |||||||||
seq2  GATATAAATACAGTAAAGTAAATGGTTATTTATACTTTTATTTTTTACTG  100

seq1  -AGATATACATATATGTTTTAAACAATTGTTCTCTCACTTCCTTTAAATT  143
       |||||||||||||   |||||||||||| ||||||||||||||||||||
seq2  AAGATATACATATAATGTTTAAACAATTG-TCTCTCACTTCCTTTAAATT  149

seq1  -CCTTTCTCCACTCCACTACTTTGTCCTCCCAACTTCATGACCTTAAAAG  192
       ||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCCTTTCTCCACTCCACTAC-TTGTCCTCCCAACTTCATGACCTTAAAAG  198

seq1  TAAAAATCCTTTGAGTCCTCACAATGCTCCCTGTACATTCATGGGTGTAG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCCTTTGAGTCCTCACAATGCTCCCTGTACATTCATGGGTGTAG  248

seq1  GACCATCTACTGGAATATGAATGTCCTACCAGGGGCCAAATCCCTGATGA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCTACTGGAATATGAATGTCCTACCAGGGGCCAAATCCCTGATGA  298

seq1  AACGAATTTTCTGCCTCCTAGCCAATGTTGGTTAATTAAACAACATCTAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAATTTTCTGCCTCCTAGCCAATGTTGGTTAATTAAACAACATCTAT  348

seq1  TTATTTTATTTATGTGCAGGTGCACACACACATGGCTTCACATTCTATAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATTTATGTGCAGGTGCACACACACATGGCTTCACATTCTATAG  398

seq1  TGTGATTGTGGAAGCCAGAAGACAAGCCGAGGGAGTCAGCTTTCTTCTTC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTGTGGAAGCCAGAAGACAAGCCGAGGGAGTCAGCTTTCTTCTTC  448

seq1  TTCTATGTGGGTCCCAGATATCAAACTCTGACCATCAGACTCCAACCTAT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGTGGGTCCCAGATATCAAACTCTGACCATCAGACTCCAACCTAT  498

seq1  TTTTAATTTTTAATGAAAGGATAGGACTTACTTTCAAAGTAGGAGTTTTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTTTAATGAAAGGATAGGACTTACTTTCAAAGTAGGAGTTTTT  548

seq1  GAGAGTGCCTTTCTCTTCTTGGGCCAGCAGGCTCTGTCGTTAACTACAGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGCCTTTCTCTTCTTGGGCCAGCAGGCTCTGTCGTTAACTACAGA  598

seq1  GTTCATTCTGCTGTGGTTTAAACTCAATGTTAGTGTTTAAGAAATCTTTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTCTGCTGTGGTTTAAACTCAATGTTAGTGTTTAAGAAATCTTTT  648

seq1  AAGTTGGGGTGGTTTTTACTCAGTATTTATGGATTGAATGCTCTTAGTCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGGGTGGTTTTTACTCAGTATTTATGGATTGAATGCTCTTAGTCA  698

seq1  ACCAGTGTTGGTGGACAACCTGTAATTGGCTAGGAGAACTCATTCCCTGG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGTTGGTGGACAACCTGTAATTGGCTAGGAGAACTCATTCCCTGG  748

seq1  TAGGAAAGCCAAAGGGGTAGTGTTTAACATCTAAATTGAAAATAGAATAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAGCCAAAGGGGTAGTGTTTAACATCTAAATTGAAAATAGAATAG  798

seq1  AAAATGTTATTAGAAGATTCAAAAGCAATTTTCATTGGTGTTTGGGAAAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTATTAGAAGATTCAAAAGCAATTTTCATTGGTGTTTGGGAAAT  848

seq1  TGCATAAAAATAGGAGAATACCATCTTATTGCTAAGTTCAAGGGTAATAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAAAATAGGAGAATACCATCTTATTGCTAAGTTCAAGGGTAATAG  898

seq1  CATGGTAGCAAACCTGATATAGCTCTACTGGTGTACAAGAACAGAGAAAT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTAGCAAACCTGATATAGCTCTACTGGTGTACAAGAACAGAGAAAT  948

seq1  AGTCTGGGTGAATGGAATAGTTGGCCTAGATAGGAGTCATGTGGATGTGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGGTGAATGGAATAGTTGGCCTAGATAGGAGTCATGTGGATGTGA  998

seq1  ACCAGCAGTGAATTC  1007
      |||||||||||||||
seq2  ACCAGCAGTGAATTC  1013