BAC Information

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BAC

Clone NameB6Ng01-178O08
Chromosome5 (Build37)
Map Location 45,935,359 - 46,017,531
singlet/doubletdoublet
Overlap gene9630031F12Rik
Upstream geneLdb2, LOC100041481, LOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28
Downstream gene9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576, EG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178O08.bB6Ng01-178O08.g
ACCGA005759GA005760
length8751,119
definitionB6Ng01-178O08.b B6Ng01-178O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,016,866 - 46,017,531)(45,935,359 - 45,936,499)
sequence
gaattcctcagtgtagaaggcactaagatcctgatggaaatagatcttgt
ggcaactttcccaggaagaatgttgagggagagaagagaatgctaccaaa
aactgaactatgaggattgctaggcaatgataaagaacctgggaaggaac
ccaggactcagagtgaaggtggtacttcagaaaccaaggaacaaggaaag
aggtccttcataaaggggagaatgatgtctggaaaaaggtagggcaaaga
aatgaagtaagctgaggcctgaaaaaaaagtcctaacgtcagagttggtc
actggtggctttactgtcaggaatgagctaggattactgggatgatgagt
gatgagctaggttgagagagcctggtacagagctcattgctggcaccttt
ccccatctatgcagactaccaaaacagaatatcatggagtgcatggctgg
aacagcaaatatttatttctcattattttgaaagttgagagtccaagata
caggtatggcagggtgtttctggtgagagtttttttcctttcttcttgtt
tcttcacatgatctttgtgagtactcacatggagagagagaagctatagg
tctttttctcttactacaggagtataccactcccacccttgtgacttcat
ttaacctcagttacctccctatgggggacctcccaacagggaccatacag
attgttcagtagataaaaggcaaatggtctttcttgccaccaagtttggt
gacctacatttcataagagaaaagctccctttttacatggtagaaggaga
gaactgactcctacaagttgtccttttatacacacacacacacacacaca
cacacacacgggtggggagggggaa

gaattccagggcattcagggctacacaaagaaatcctgtctcaaaaaaca
aaattaaacaaataaaataataatgatgaaataaattaacttgattaata
ggtttgttattttgtgtcctaattttaagaaaggaaattaaaaagaaatc
attaggaatgagagaaagaaatttaagagaaaatgtagatatctagctat
atttttgataagaaaagctataaagataatgttcttgaaaaaagcctttt
ggatgggaaaataagggtttgtcctaagataaaagctgagcttttccaaa
atggaagaagaaagatgaacacaaaacaagaatatttaagtacatcctac
aaggttccggtaaatcatataaggtttgatttatgtatgatgcttgcagg
ttattaaaattcctaaggtcaccattcagtacatggatataaaactaaaa
tccagtcctctgctttaaacaatgagtgtttgttaagacacaggtctgtt
tttgatgcatttataaaacccagcttaaaaaacaaagatataaggttgca
gagatggctctgtggttaagaataccggcttctctgtcagaggactcaga
ttcaggtcccaggtctcatctcataactgcttgtaatcgcagttccaggg
ttccccatgcctgctccatggcacaggcacacacatatgccattcataca
ggcctgtgtggttattgtcatctctggacacagtggataagaggcattgt
gcaagacctggcttttgcggctcctagaatcttaggtgattttagtgcat
ctaataacgtaggtaattattacatataaatgagtgtctgaactgtgcat
catgcaaaagtttataattaaaggcatgcaaagtaaacaataaagggctc
ttcttatacaaaacattatgggccaatgcaatccttttgatatttctacc
ttttttaaagtcaataccactcaaacaaacaaacaaatcccaagcaccca
aactacatttgggtggtctgtatttaagtctgctctctctatgccctgaa
aaagtagtattttgttaatacatatatgtacactatttttaaaatgagtt
attcaagactagtcttcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_46016866_46017531
seq2: B6Ng01-178O08.b_247_913 (reverse)

seq1  TCCCCCT-CCCACCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAAA  49
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTCCCCACCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAAA  50

seq1  AGGACAACTTGTAGGAGTCAGTTCTCTCCTTCTACCATGTAAAAAGGGAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAACTTGTAGGAGTCAGTTCTCTCCTTCTACCATGTAAAAAGGGAG  100

seq1  CTTTTCTCTTATGAAATGTAGGTCACCAAACTTGGTGGCAAGAAAGACCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCTTATGAAATGTAGGTCACCAAACTTGGTGGCAAGAAAGACCA  150

seq1  TTTGCCTTTTATCTACTGAACAATCTGTATGGTCCCTGTTGGGAGGTCCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTTTTATCTACTGAACAATCTGTATGGTCCCTGTTGGGAGGTCCC  200

seq1  CCATAGGGAGGTAACTGAGGTTAAATGAAGTCACAAGGGTGGGAGTGGTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGGAGGTAACTGAGGTTAAATGAAGTCACAAGGGTGGGAGTGGTA  250

seq1  TACTCCTGTAGTAAGAGAAAAAGACCTATAGCTTCTCTCTCTCCATGTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTGTAGTAAGAGAAAAAGACCTATAGCTTCTCTCTCTCCATGTGA  300

seq1  GTACTCACAAAGATCATGTGAAGAAACAAGAAGAAAGGAAAAAAACTCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCACAAAGATCATGTGAAGAAACAAGAAGAAAGGAAAAAAACTCTC  350

seq1  ACCAGAAACACCCTGCCATACCTGTATCTTGGACTCTCAACTTTCAAAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAACACCCTGCCATACCTGTATCTTGGACTCTCAACTTTCAAAAT  400

seq1  AATGAGAAATAAATATTTGCTGTTCCAGCCATGCACTCCATGATATTCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAAATAAATATTTGCTGTTCCAGCCATGCACTCCATGATATTCTG  450

seq1  TTTTGGTAGTCTGCATAGATGGGGAAAGGTGCCAGCAATGAGCTCTGTAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTAGTCTGCATAGATGGGGAAAGGTGCCAGCAATGAGCTCTGTAC  500

seq1  CAGGCTCTCTCAACCTAGCTCATCACTCATCATCCCAGTAATCCTAGCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCTCTCAACCTAGCTCATCACTCATCATCCCAGTAATCCTAGCTC  550

seq1  ATTCCTGACAGTAAAGCCACCAGTGACCAACTCTGACGTTAGGACTTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGACAGTAAAGCCACCAGTGACCAACTCTGACGTTAGGACTTTTT  600

seq1  TTTCAGGCCTCAGCTTACTTCATTTCTTTGCCCTACCTTTTTCCAGACAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGCCTCAGCTTACTTCATTTCTTTGCCCTACCTTTTTCCAGACAT  650

seq1  CATTCTCCCCTTTATGA  666
      |||||||||||||||||
seq2  CATTCTCCCCTTTATGA  667


seq1: chr5_45935359_45936499
seq2: B6Ng01-178O08.g_61_1179

seq1  GAATTCCAGGGCATTCAGGGCTACACAAAGAAATCCTGTCTCAAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGCATTCAGGGCTACACAAAGAAATCCTGTCTCAAAAAACA  50

seq1  AAATTAAACAAATAAAATAATAATGATGAAATAAATTAACTTGATTAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAACAAATAAAATAATAATGATGAAATAAATTAACTTGATTAATA  100

seq1  GGTTTGTTATTTTGTGTCCTAATTTTAAGAAAGGAAATTAAAAAGAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTTATTTTGTGTCCTAATTTTAAGAAAGGAAATTAAAAAGAAATC  150

seq1  ATTAGGAATGAGAGAAAGAAATTTAAGAGAAAATGTAGATATCTAGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGAATGAGAGAAAGAAATTTAAGAGAAAATGTAGATATCTAGCTAT  200

seq1  ATTTTTGATAAGAAAAGCTATAAAGATAATGTTCTTGAAAAAAGCCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGATAAGAAAAGCTATAAAGATAATGTTCTTGAAAAAAGCCTTTT  250

seq1  GGATGGGAAAATAAGGGTTTGTCCTAAGATAAAAGCTGAGCTTTTCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGAAAATAAGGGTTTGTCCTAAGATAAAAGCTGAGCTTTTCCAAA  300

seq1  ATGGAAGAAGAAAGATGAACACAAAACAAGAATATTTAAGTACATCCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGAAGAAAGATGAACACAAAACAAGAATATTTAAGTACATCCTAC  350

seq1  AAGGTTCCGGTAAATCATATAAGGTTTGATTTATGTATGATGCTTGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCCGGTAAATCATATAAGGTTTGATTTATGTATGATGCTTGCAGG  400

seq1  TTATTAAAATTCCTAAGGTCACCATTCAGTACATGGATATAAAACTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAAATTCCTAAGGTCACCATTCAGTACATGGATATAAAACTAAAA  450

seq1  TCCAGTCCTCTGCTTTAAACAATGAGTGTTTGTTAAGACACAGGTCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCCTCTGCTTTAAACAATGAGTGTTTGTTAAGACACAGGTCTGTT  500

seq1  TTTGATGCATTTATAAAACCCAGCTTAAAAAACAAAGATATAAGGTTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGCATTTATAAAACCCAGCTTAAAAAACAAAGATATAAGGTTGCA  550

seq1  GAGATGGCTCTGTGGTTAAGAATACCGGCTTCTCTGTCAGAGGACTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTCTGTGGTTAAGAATACCGGCTTCTCTGTCAGAGGACTCAGA  600

seq1  TTCAGGTCCCAGGTCTCATCTCATAACTGCTTGTAATCGCAGTTCCAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTCCCAGGTCTCATCTCATAACTGCTTGTAATCGCAGTTCCAGGG  650

seq1  TTCCCCATGCCTGCTCCATGGCACAGGCACACACATATGCCATTCATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCATGCCTGCTCCATGGCACAGGCACACACATATGCCATTCATACA  700

seq1  GGCCTGTGTGGTTATTGTCATCTCTGGACACAGTGGATAAGAGGCATTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTGTGGTTATTGTCATCTCTGGACACAGTGGATAAGAGGCATTGT  750

seq1  GCAAGACCTGGCTTTTGCGGCTCCTAGAATCTTAGGTGATTTTAGTGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACCTGGCTTTTGCGGCTCCTAGAATCTTAGGTGATTTTAGTGCAT  800

seq1  CTAATAACGTAGGTAATTATTACATATAAATGAGTGTCTGAACTGTGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAACGTAGGTAATTATTACATATAAATGAGTGTCTGAACTGTGCAT  850

seq1  CATGCAAAAGTTTATAATTAAAGGCATGCAAAGTAAACAAT-AAGGGCTC  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CATGCAAAAGTTTATAATTAAAGGCATGCAAAGTAAACAATAAAGGGCTC  900

seq1  TTCTTATACAAAACATTAT-GGCCAATGCAATCCTTTTGATATTTCTACC  948
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTCTTATACAAAACATTATGGGCCAATGCAATCCTTTTGATATTTCTACC  950

seq1  -TTTTTAAAGTCAATACCACTCAAACAAAACCAAACAAAATCCCAAGCCA  997
       ||||||||||||||||||||||||||||  ||||| |||||||||| ||
seq2  TTTTTTAAAGTCAATACCACTCAAACAAA--CAAAC-AAATCCCAAG-CA  996

seq1  CCCAAACCTACAATTTGGGTGGTCCTGTTATTTTAAAGTCTGCTCTTCCT  1047
      |||||| |||| ||||||||||| ||| |||||  |||||||||||  ||
seq2  CCCAAA-CTAC-ATTTGGGTGGT-CTG-TATTT--AAGTCTGCTCT--CT  1038

seq1  CTATGGCCCTGAAAAAAGTAAGTATTTTGTTATTACATATATGTTACACT  1097
      |||| |||||| ||||||| |||||||||||| |||||||||| ||||||
seq2  CTAT-GCCCTG-AAAAAGT-AGTATTTTGTTAATACATATATG-TACACT  1084

seq1  TAATTTTTTAAAAATTGAGTTTATTTCAGAGACTAAGTCTTCTA  1141
        ||||||   ||| ||||||   |||| ||||| |||||||||
seq2  --ATTTTT---AAAATGAGTT--ATTCA-AGACT-AGTCTTCTA  1119


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