BAC Information

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BAC

Clone NameB6Ng01-178P12
Chromosome5 (Build37)
Map Location 9,440,515 - 9,441,309
singlet/doubletsinglet
Overlap gene9330182L06Rik
Upstream geneSlc25a40, Gm440, Abcb1a, EG330031, Abcb1b, Abcb4, Crot, 4930420K17Rik, Dmtf1, LOC654361
Downstream geneGrm3, LOC100042768, LOC625446, LOC435832, LOC100041395, LOC381612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178P12.bB6Ng01-178P12.g
ACCGA005814GA005815
length800962
definitionB6Ng01-178P12.b B6Ng01-178P12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatggttatagaaagtggcttctaatgtcaagatttaagggctt
ttatttagaactactgaatgggagtgaaggtaacccactgttactcaagc
tgtagtctggaacactctgtttattctggtggtgtcaacaaaagcataac
ttgctcatgcagttgcactccaaggcagatgccactctttctgctctctt
tctagaacagacgattcatcaatgatgtggtgaagatttattctatcaca
gccactaatgcagttgatggggtagcagcgtcatgtcgtgcctgtgccct
gggctctgagcagtcggcctcatcatgtgtaccctgccccccaggccact
acattgagaaggaaaccaaccagtgcaaggagtgtccagctgacacctac
ctgtccatccaccaggtctatggcaaggaagcttgcattccgtgtgggcc
tggaagtaaaagcacccaggtaaggacgtggctgtccagttactccctct
ggggtggtggaggcagaggtggtggagttgctatcgatgctggaaaatgc
tctgcaattctcattcctgttttctcttctcttacattaattgagctctg
aatttatgctgtggaaatgctggttactagtcacaaaatatgagggaaaa
tatttaataagaagttttttcaaaaatactacaattgatatcttgtgcat
ttccaagataaggaggagctgtcctgtgagctgggtgtaggagtgcctgg
ggaaagcaatactcgtggtgtacagcattttcaagtttgaaagcaaatca

gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtctaccttcttgagttctttatatatattggatattcgtccc
ctatctgatttaggataggttaagatcctttcccaatctgctggtggcct
tttggtcttattgacagtgtcttttttttcgcattttttattaggtattt
agctcatttacatttccaatgctatacaaaagtcccccatatccacccac
ccttagagaagctttgcagttttatgaggtcccatttgtcaattcttgat
cttacagcacaagccattgctgttctgttcaagtgtttttcccctgtgcc
catatcttcgaggcttttccccactttctcctctataagtttcagtgtct
ctggttttatgtgaagttccttgatccaggtagatttgaccttagtacaa
ggagataggaatggatcaattcgcattcttctatgtgataaccaccagtt
gtgccagcaccatttgttgaaaatgctgtcttttttccactggatggttt
tagctcccttgtcaaagatcaagtgaccataagtgtgtgggttcatttct
gggtcttcaattctattccattggtctacttgtctgtcgctataccagta
ccatgccatttttaacacaatttcactgtagtacagctttaggtcaggca
tggtgattccaccagaggttcttttatccttgagaagagtttttgctatc
ctaggttttttgtttattccagatgaatttacagattgccctttctaatt
cgttgaagaattgagttggaattttgatggggattgcattgaatctgtag
attgcttttggcaagatagccatttttacaatgttgatccctgccatcca
tgagcatgggaggtctttccatcttctaatatctttaattccttcttcag
acccttgaaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_9440515_9441309
seq2: B6Ng01-178P12.b_45_844

seq1  GAATTCCATGGTTATAGAAAGTGGCTTCTAATGTCAAGATTTAAGGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGTTATAGAAAGTGGCTTCTAATGTCAAGATTTAAGGGCTT  50

seq1  TTATTTAGAACTACTGAATGGGAGTGAAGGTAACCCACTGTTACTCAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAGAACTACTGAATGGGAGTGAAGGTAACCCACTGTTACTCAAGC  100

seq1  TGTAGTCTGGAACACTCTGTTTATTCTGGTGGTGTCAACAAAAGCATAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCTGGAACACTCTGTTTATTCTGGTGGTGTCAACAAAAGCATAAC  150

seq1  TTGCTCATGCAGTTGCACTCCAAGGCAGATGCCACTCTTTCTGCTCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCATGCAGTTGCACTCCAAGGCAGATGCCACTCTTTCTGCTCTCTT  200

seq1  TCTAGAACAGACGATTCATCAATGATGTGGTGAAGATTTATTCTATCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAACAGACGATTCATCAATGATGTGGTGAAGATTTATTCTATCACA  250

seq1  GCCACTAATGCAGTTGATGGGGTAGCAGCGTCATGTCGTGCCTGTGCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTAATGCAGTTGATGGGGTAGCAGCGTCATGTCGTGCCTGTGCCCT  300

seq1  GGGCTCTGAGCAGTCGGCCTCATCATGTGTACCCTGCCCCCCAGGCCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTGAGCAGTCGGCCTCATCATGTGTACCCTGCCCCCCAGGCCACT  350

seq1  ACATTGAGAAGGAAACCAACCAGTGCAAGGAGTGTCCAGCTGACACCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAGAAGGAAACCAACCAGTGCAAGGAGTGTCCAGCTGACACCTAC  400

seq1  CTGTCCATCCACCAGGTCTATGGCAAGGAAGCTTGCATTCCGTGTGGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCATCCACCAGGTCTATGGCAAGGAAGCTTGCATTCCGTGTGGGCC  450

seq1  TGGAAGTAAAAGCACCCAGGTAAGGACGTGGCTGTCCAGTTACTCCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTAAAAGCACCCAGGTAAGGACGTGGCTGTCCAGTTACTCCCTCT  500

seq1  GGGGTGGTGGAGGCAGAGGTGGTGGAGTTGCTATCGATGCTGGAAAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGTGGAGGCAGAGGTGGTGGAGTTGCTATCGATGCTGGAAAATGC  550

seq1  TCTGCAATTCTCATTCCTGTTTTCTCTTCTCTTACATTAATTGAGCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAATTCTCATTCCTGTTTTCTCTTCTCTTACATTAATTGAGCTCTG  600

seq1  AATTTATGCTGTGGAAATGCTGGTTACTAGTCACAAAATATGAGGGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATGCTGTGGAAATGCTGGTTACTAGTCACAAAATATGAGGGAAAA  650

seq1  TATTTAATAAGAAG-TTTTTCAAAAATACTACAATTGATATCTTGTGCAT  699
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TATTTAATAAGAAGTTTTTTCAAAAATACTACAATTGATATCTTGTGCAT  700

seq1  TTCCAAGAT-AGGAGGAGCTGTCCTGTGAGCTGGGTGTAGGAGTGCCTGG  748
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGATAAGGAGGAGCTGTCCTGTGAGCTGGGTGTAGGAGTGCCTGG  750

seq1  GG-AAGCAATACTCGTGGTGTACAGCA-TTTCAAGTTTG-AAGCAAATCA  795
      || |||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  GGAAAGCAATACTCGTGGTGTACAGCATTTTCAAGTTTGAAAGCAAATCA  800