BAC Information

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BAC

Clone NameB6Ng01-179E08
Chromosome5 (Build37)
Map Location 47,036,969 - 47,182,155
singlet/doubletdoublet
Overlap genenone
Upstream gene1600023N17Rik, Lcorl, LOC100041576, EG666103
Downstream geneLOC100040865
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179E08.bB6Ng01-179E08.g
ACCGA006039GA006040
length1,1721,126
definitionB6Ng01-179E08.b B6Ng01-179E08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,036,969 - 47,038,155)(47,181,048 - 47,182,155)
sequence
gaattctatagttcaagggcatctgctgtataattttgtttaagagtcta
cagatccttccttcaaaacaaccttcaagagtgtaatcaatgattctaat
aaccccctgctctatacaatgtaagatatttcagacagattgcattagcc
tagcaaagaagagattaaaggggagaattcttactttttattagtaactc
aagaaaagatttgtataaactggtttaaaatactccatttattttcacca
agctggatttattatctaaaacttttcaaatatttaagaagagtatttgg
aattggatatcaagcacttataccagcaattttaatattaatatttatct
ttgttgaaagctgtatttgtatataacaaactttatagagattaaaatga
cttatcatgtcttttaggaccctacactatgtaaccaagccaagagaaca
ttaagcaggactgtgagtgccaaagggaactgtggctcaatgaaaatgct
tctgttatctctacctctgggctcctcatgtgatttaaagtactgaagtt
aatgttgatataaatgaaagacctgacacacacacatcaatgcaacagaa
cagacattcccaggatagacccacagaaacaccaccaactgatttttgac
aaaactacagagactactgaaaaaagaaagaattatttttcaataaattg
tgttgactcaattgttcattcatatgcagaaacagaaggcaaagtcatcc
accttatatgtccattatataccaacatggatcctaatctaaatataaaa
attgaatagttttagaagaaaatgtaagagaaaaatcttctctggtctgg
gtttagccgagttatagcattatgagactaggtatacaaaataatagaaa
tcctattttaatttcaccaaaattgaaaactctcataggctacacagagg
tgggctgtaaatataatatcaacaggtgggaggctgaatcaagggattgt
gcattaaggctagactggactacacatgagctctacattcacagcagcaa
aacacagcagccacaaaaagaataataaacaaactttaaccagaacattt
gtagtcctcataccccacacaaaaaaactacaacggaatatgtaagttta
tggaactctaacgtaacaataa

gaattcttggccagtaagtctagcgcattcacagccttcatcagttaaca
aggtacagttcaatcccattttgcctccaattcctcattaagcttggctc
aaattcaagccccagctcctcccactgtccctgaatggtctccatgtttc
cctgcactaaagaagagattaatttgtagaaaggcttcagcacattcctg
ggttgctcaagtgcatttcttttcatagaacaagcttcccgattttgcgc
tttaaatcaaaggcagagagcaaaaattccaagtatgtatgagcttccga
cctttaaagaaacagaattgttcagatggaattccacatggaaatgctcc
actctattacccttgctagtttgatttttcctcaagatacaccctttctt
ttttctgctaaatatcagagtttcaatcaagctggtgtttggcaaagcat
taaagataaatgaagagtcctctattagtaatttattcatatcgtcattg
cagataattcatttcattgctcaagaccattgcttgagttaggaaacctg
ttggcagaattcatattagcactctatttcctacagtcatgggaaacaat
gcatttatttagacactgactcagatattgtgatcaaaatctatggcatt
tgtaaaaaatatatatataatttttgaaaatttgttcaaatctcttagct
aaaaccaggaaacaaagacaaaatttaacactacatagaaagatgagtat
caatgtctgtaagtgatcaaaaaaaaaaacaaacaaacaaataaaaccta
caatttcctttatcctattttgttttcatttgatttgttctctctaatgc
ttatatcaaacaaaacagtcatccattcagaagaaggcattgcaaccagg
gtgaaatcagagatgctggacaatgtctgtgtaagaaaaacacaaagaca
atcccaaatccccggttctctcaatttttgtccatgtcatattgcataag
tttaagaaaaggcagccagttgtcacaggtgttgttctcactgttaggat
tgtgcttctaagttaaagaatgattaataatttggccatctaacaaactg
gccattaaaattttaaaaaattgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_47036969_47038155
seq2: B6Ng01-179E08.b_44_1215

seq1  GAATTCTATAGTTCAAGGGCATCTGCTGTATAATTTTGTTTAAGAGTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAGTTCAAGGGCATCTGCTGTATAATTTTGTTTAAGAGTCTA  50

seq1  CAGATCCTTCCTTCAAAACAACCTTCAAGAGTGTAATCAATGATTCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCTTCCTTCAAAACAACCTTCAAGAGTGTAATCAATGATTCTAAT  100

seq1  AACCCCCTGCTCTATACAATGTAAGATATTTCAGACAGATTGCATTAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCTGCTCTATACAATGTAAGATATTTCAGACAGATTGCATTAGCC  150

seq1  TAGCAAAGAAGAGATTAAAGGGGAGAATTCTTACTTTTTATTAGTAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAGAAGAGATTAAAGGGGAGAATTCTTACTTTTTATTAGTAACTC  200

seq1  AAGAAAAGATTTGTATAAACTGGTTTAAAATACTCCATTTATTTTCACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGATTTGTATAAACTGGTTTAAAATACTCCATTTATTTTCACCA  250

seq1  AGCTGGATTTATTATCTAAAACTTTTCAAATATTTAAGAAGAGTATTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGATTTATTATCTAAAACTTTTCAAATATTTAAGAAGAGTATTTGG  300

seq1  AATTGGATATCAAGCACTTATACCAGCAATTTTAATATTAATATTTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGATATCAAGCACTTATACCAGCAATTTTAATATTAATATTTATCT  350

seq1  TTGTTGAAAGCTGTATTTGTATATAACAAACTTTATAGAGATTAAAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAAAGCTGTATTTGTATATAACAAACTTTATAGAGATTAAAATGA  400

seq1  CTTATCATGTCTTTTAGGACCCTACACTATGTAACCAAGCCAAGAGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCATGTCTTTTAGGACCCTACACTATGTAACCAAGCCAAGAGAACA  450

seq1  TTAAGCAGGACTGTGAGTGCCAAAGGGAACTGTGGCTCAATGAAAATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAGGACTGTGAGTGCCAAAGGGAACTGTGGCTCAATGAAAATGCT  500

seq1  TCTGTTATCTCTACCTCTGGGCTCCTCATGTGATTTAAAGTACTGAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTATCTCTACCTCTGGGCTCCTCATGTGATTTAAAGTACTGAAGTT  550

seq1  AATGTTGATATAAATGAAAGACCTGACACACACACATCAATGCAACAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGATATAAATGAAAGACCTGACACACACACATCAATGCAACAGAA  600

seq1  CAGACATTCCCAGGATAGACCCACAGAAACACCACCAACTGATTTTTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATTCCCAGGATAGACCCACAGAAACACCACCAACTGATTTTTGAC  650

seq1  AAAACTACAGAGACTACTGAAAAAAGAAAGAATTATTTTTCAATAAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTACAGAGACTACTGAAAAAAGAAAGAATTATTTTTCAATAAATTG  700

seq1  TGTTGACTCAATTGTTCATTCATATGCAGAAACAGAAGGCAAAGTCATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACTCAATTGTTCATTCATATGCAGAAACAGAAGGCAAAGTCATCC  750

seq1  ACCTTATATGTCCATTATATACCAACATGGATCCTAATCTAAATATAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATATGTCCATTATATACCAACATGGATCCTAATCTAAATATAAAA  800

seq1  ATTGAATAGTTTTAGAAGAAAATGTAAGAGAAAAATCTTCTCTGGTCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATAGTTTTAGAAGAAAATGTAAGAGAAAAATCTTCTCTGGTCTGG  850

seq1  GTTTAGCCGAGTTATAGCATTATGAGACTAGGTATACAAAATAATAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGCCGAGTTATAGCATTATGAGACTAGGTATACAAAATAATAGAAA  900

seq1  TCCTATTTTAATTTCACCAAAATTGAAAACTCTCATAGGCTACACAGAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTTTAATTTCACCAAAATTGAAAACTCTCATAGGCTACACAGAGG  950

seq1  TGGGCTGTAAATATAATATCAACAGGTGGGAGGCTGAATCAAGGGATTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGTAAATATAATATCAACAGGTGGGAGGCTGAATCAAGGGATTGT  1000

seq1  GCATTTAAGGCTAGACTGGACTACACAATGAGCTTCTACATTCACAGCAA  1050
      ||| |||||||||||||||||||||| |||||| |||||||||||||| |
seq2  GCA-TTAAGGCTAGACTGGACTACAC-ATGAGC-TCTACATTCACAGC-A  1046

seq1  GCAAAACAACAGCAGCAACAAAAAAGAAATAAAATAAAAACAAACTATAA  1100
      ||||||| |||||||| |||||||   ||||    | ||||||||| | |
seq2  GCAAAAC-ACAGCAGCCACAAAAA--GAATA----ATAAACAAACT-TTA  1088

seq1  ACAAGAACATTTGTAGT-CTCATACCCCACACAAAAAAACTTACAAACAG  1149
      || |||||||||||||| |||||||||||||||||||||| ||| ||| |
seq2  ACCAGAACATTTGTAGTCCTCATACCCCACACAAAAAAAC-TAC-AACGG  1136

seq1  AATATGTAAGTTTAT-GAACTCATAACGTTTAACAATAA  1187
      ||||||||||||||| |||||| |||||  |||||||||
seq2  AATATGTAAGTTTATGGAACTC-TAACG--TAACAATAA  1172


seq1: chr5_47181048_47182155
seq2: B6Ng01-179E08.g_69_1194 (reverse)

seq1  TTGC-ATTTTTTAAAATTTTAATGG-CAG-TTGTTAGAT-GCCAAATTAT  46
      |||| |||||||||||||||||||| ||| ||||||||| ||||||||||
seq2  TTGCAATTTTTTAAAATTTTAATGGCCAGTTTGTTAGATGGCCAAATTAT  50

seq1  TAAATCATTCTTTAAC-TAG-AGCACAATCCTAACAGTGAGAACAACACC  94
      | |||||||||||||| ||| |||||||||||||||||||||||||||||
seq2  T-AATCATTCTTTAACTTAGAAGCACAATCCTAACAGTGAGAACAACACC  99

seq1  TGTGACAACTGGCTGCCTTTTC-TAAAC-TATGC-ATATGACATGAACAA  141
      |||||||||||||||||||||| ||||| ||||| |||||||||| ||||
seq2  TGTGACAACTGGCTGCCTTTTCTTAAACTTATGCAATATGACATGGACAA  149

seq1  AAATTGAG---ACCGGGGA-TTGGGA-TGTCTTTGTG-TTTTCTTACACA  185
      ||||||||   |||||||| |||||| |||||||||| ||||||||||||
seq2  AAATTGAGAGAACCGGGGATTTGGGATTGTCTTTGTGTTTTTCTTACACA  199

seq1  GACATTGTCCAGCATCTCTG-TTTCA-CCTGG-TGCAATGCCTTCTTCTG  232
      |||||||||||||||||||| ||||| ||||| |||||||||||||||||
seq2  GACATTGTCCAGCATCTCTGATTTCACCCTGGTTGCAATGCCTTCTTCTG  249

seq1  AATGGATGACTGTTTTGTTTGATATAAGCATTAGAGAGAACAAATCAAAT  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATGACTGTTTTGTTTGATATAAGCATTAGAGAGAACAAATCAAAT  299

seq1  GAAAACAAAATAGGATAAAGGAAATTGTAGGTTTTATTTGTTTGTTTGTT  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAAATAGGATAAAGGAAATTGTAGGTTTTATTTGTTTGTTTGTT  349

seq1  TTTTTTTTTGATCACTTACAGACATTGATACTCATCTTTCTATGTAGTGT  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGATCACTTACAGACATTGATACTCATCTTTCTATGTAGTGT  399

seq1  TAAATTTTGTCTTTGTTTCCTGGTTTTAGCTAAGAGATTTGAACAAATTT  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTGTCTTTGTTTCCTGGTTTTAGCTAAGAGATTTGAACAAATTT  449

seq1  TCAAAAATTATATATATATTTTTTACAAATGCCATAGATTTTGATCACAA  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATTATATATATATTTTTTACAAATGCCATAGATTTTGATCACAA  499

seq1  TATCTGAGTCAGTGTCTAAATAAATGCATTGTTTCCCATGACTGTAGGAA  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAGTCAGTGTCTAAATAAATGCATTGTTTCCCATGACTGTAGGAA  549

seq1  ATAGAGTGCTAATATGAATTCTGCCAACAGGTTTCCTAACTCAAGCAATG  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTGCTAATATGAATTCTGCCAACAGGTTTCCTAACTCAAGCAATG  599

seq1  GTCTTGAGCAATGAAATGAATTATCTGCAATGACGATATGAATAAATTAC  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAGCAATGAAATGAATTATCTGCAATGACGATATGAATAAATTAC  649

seq1  TAATAGAGGACTCTTCATTTATCTTTAATGCTTTGCCAAACACCAGCTTG  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAGGACTCTTCATTTATCTTTAATGCTTTGCCAAACACCAGCTTG  699

seq1  ATTGAAACTCTGATATTTAGCAGAAAAAAGAAAGGGTGTATCTTGAGGAA  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAACTCTGATATTTAGCAGAAAAAAGAAAGGGTGTATCTTGAGGAA  749

seq1  AAATCAAACTAGCAAGGGTAATAGAGTGGAGCATTTCCATGTGGAATTCC  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAACTAGCAAGGGTAATAGAGTGGAGCATTTCCATGTGGAATTCC  799

seq1  ATCTGAACAATTCTGTTTCTTTAAAGGTCGGAAGCTCATACATACTTGGA  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAACAATTCTGTTTCTTTAAAGGTCGGAAGCTCATACATACTTGGA  849

seq1  ATTTTTGCTCTCTGCCTTTGATTTAAAGCGCAAAATC-AAAAGCTTGTTC  881
      |||||||||||||||||||||||||||||||||||||   ||||||||||
seq2  ATTTTTGCTCTCTGCCTTTGATTTAAAGCGCAAAATCGGGAAGCTTGTTC  899

seq1  TATGAAAAGAAATGCACTTGAGCAACCCAGGAATGTGCTGAAGCCTTTCT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAAGAAATGCACTTGAGCAACCCAGGAATGTGCTGAAGCCTTTCT  949

seq1  ACAAATTAATCTCTTCTTTAGTGCAGGGAAACATGGAGACCATTCAGGGA  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTAATCTCTTCTTTAGTGCAGGGAAACATGGAGACCATTCAGGGA  999

seq1  CAGTGGGAGGAGCTGGGGCTTGAATTTGAGCCAAGCTTAATGAGGAATTG  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGAGGAGCTGGGGCTTGAATTTGAGCCAAGCTTAATGAGGAATTG  1049

seq1  GAGGCAAAATGGGATTGAACTGTACCTTGTTAACTGATGAAGGCTGTGAA  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAAATGGGATTGAACTGTACCTTGTTAACTGATGAAGGCTGTGAA  1099

seq1  TGCGCTAGACTTACTGGCCAAGAATTC  1108
      |||||||||||||||||||||||||||
seq2  TGCGCTAGACTTACTGGCCAAGAATTC  1126


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