BAC Information

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BAC

Clone NameB6Ng01-180E04
Chromosome5 (Build37)
Map Location 77,273,472 - 77,418,569
singlet/doubletdoublet
Overlap geneC530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72
Upstream geneKdr, Gabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299
Downstream geneArl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180E04.bB6Ng01-180E04.g
ACCGA006747GA006748
length5771,119
definitionB6Ng01-180E04.b B6Ng01-180E04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,417,991 - 77,418,569)(77,273,472 - 77,274,567)
sequence
gaattcagtggtgcattacctactagtctgtgggttgttcagcataacgc
accagcaatgaaacagcttcactacctgacacctcagtaagcagggaagt
ttcatgtctttacctgaagcagctctattgcttttgtatgctgcttttca
cgacagagctgggcggcttggattagcacaggcaggagatactcaggact
ctgcgactgcaagctggcagctatttttcggcactgttctgcctaaaaga
tgccccatctttattaataagtgtattaataaaagtaaacattaaataat
ccaatataaacggatggagtaatcagcttgtagaacagtagatgaaaaaa
aatgcaggattaagcaaataagtttatagcatccatctcatattttatta
tttttatttagatttatagatttataacatactgaattaattgattttaa
gagagttctaaaagcagtaagcaaaatgcaagctctaaatgatcatctga
atacctaaattccaggtatataaagtttagaatttcttcctttttatatt
tttttgttttttgtttttcgagacagg
gaattccaaaatcatacatttgaggatctttttttttttttttcatctaa
tacagctgtcaagggcagaaagaataaacacccattcttggccaagtctt
cctagaacaagtatctaaatccgtatgctctttttattttctttgagaaa
aggattcacttctgagatggaagggtctgcagtttgctcaaaaggacagc
actttttttcccctctgtggttcgcgcttacaggcatggtttgggaggtg
gggaaatggctgcagaagaaaagaatctgatcaattctaaacactggcag
tgcagagagctgcaggatacaatgtgcttggcacttccacaccacagcat
ccagcctcataaatatggatgtgcgttcctgccgcgtcactctcgagcat
tccatactacaaaatggtccaaatgaaatggacaaaatatagttcatttc
tgctcacattccagctgcaacagtagctccattcatagccactagcagca
cacggaacgatttccactctcctctcccgctatagctgcgatgtgtgcac
agacagagcttgcaggggagataaactccagggccagcttataacagccg
gatttttcagtcgttgctcacctctactgtgggtcattccgtgacgatgt
cctgagcaaactgaaggcagtaaaaataatttatccacatatgacacctc
acctcaacttaccagatggatttgagcagtgatctcttagttgccaatac
atcttacagaatgtcacagtaacccaatctcctttgagtcacctaaagga
ggcatttggagaagggcatgtggcaggaatgtgagagacgggtccttgac
caccagagggcccaaccaccgtagagtaattggggctccaagcccttgtc
ccaaccttgggccccaccagctcttacctaaaaaccctcaggacagaaaa
ccaggccctgttcccagtcttctttccactgcctgctcaaagttcatctc
ccctctgggtcctcaacccgaagtttgttttcccgtgggggaatttcaag
gtgggcctttaactaaaagacaccttgccatcctcaattaacctcggcca
tgtgttaacgaacacagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_77417991_77418569
seq2: B6Ng01-180E04.b_50_627 (reverse)

seq1  CCTGTCTCGAAAAACAAAAAACAAAAAAATATAAAAAGGAAGAAATTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCGAAAAACAAAAAACAAAAAAATATAAAAAGGAAGAAATTCTA  50

seq1  AACTTTATATACCTGGAATTTAGGTATTCAGATGATCATTTAGAGCTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTATATACCTGGAATTTAGGTATTCAGATGATCATTTAGAGCTTGC  100

seq1  ATTTTGCTTACTGCTTTTAGAACTCTCTTAAAATCAATTAATTCAGTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTTACTGCTTTTAGAACTCTCTTAAAATCAATTAATTCAGTATG  150

seq1  TTATAAATCTATAAATCTAAATAAAAATAATAAAATATGAGATGGATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATCTATAAATCTAAATAAAAATAATAAAATATGAGATGGATGCT  200

seq1  ATAAACTTATTTGCTTAATCCTGCATTTTTTTTCATCTACTGTTCTACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTTATTTGCTTAATCCTGCATTTTTTTTCATCTACTGTTCTACAA  250

seq1  GCTGATTACTCCATCCGTTTATATTGGATTATTTAATGTTTACTTTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTACTCCATCCGTTTATATTGGATTATTTAATGTTTACTTTTATT  300

seq1  AATACACTTATTAATAAAGATGGGGCATCTTTTAGGCAGAACAGTGCCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACTTATTAATAAAGATGGGGCATCTTTTAGGCAGAACAGTGCCGA  350

seq1  AAAATAGCTGCCAGCTTGCAGTCGCAGAGTCCTGAGTATCTCCTGCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCTGCCAGCTTGCAGTCGCAGAGTCCTGAGTATCTCCTGCCTGT  400

seq1  GCTAATCCAAGCCGCCCAGCTCTGTCGTGAAAAGCAGCATACAAAAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATCCAAGCCGCCCAGCTCTGTCGTGAAAAGCAGCATACAAAAGCAA  450

seq1  TAGAGCTGCTTCAGGTAAAGACATGAAACTTCCCTGCTTACTGAGGTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTGCTTCAGGTAAAGACATGAAACTTCCCTGCTTACTGAGGTGTC  500

seq1  AGGTAGTGAAGCTGTTTCATTGCTGGTGCGTTATGCTGTAACAACCCACA  550
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGGTAGTGAAGCTGTTTCATTGCTGGTGCGTTATGCTG-AACAACCCACA  549

seq1  GACTAGTAGGTAATGCACCACTGAATTCC  579
      |||||||||||||||||||||||||||||
seq2  GACTAGTAGGTAATGCACCACTGAATTCC  578

seq1: chr5_77273472_77274567
seq2: B6Ng01-180E04.g_67_1185

seq1  GAATTCCAAAATCATACATTTGAGGATCTTTTTTTTTTTTTTTCATCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAATCATACATTTGAGGATCTTTTTTTTTTTTTTTCATCTAA  50

seq1  TACAGCTGTCAAGGGCAGAAAGAATAAACACCCATTCTTGGCCAAGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTGTCAAGGGCAGAAAGAATAAACACCCATTCTTGGCCAAGTCTT  100

seq1  CCTAGAACAAGTATCTAAATCCGTATGCTCTTTTTATTTTCTTTGAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAACAAGTATCTAAATCCGTATGCTCTTTTTATTTTCTTTGAGAAA  150

seq1  AGGATTCACTTCTGAGATGGAAGGGTCTGCAGTTTGCTCAAAAGGACAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCACTTCTGAGATGGAAGGGTCTGCAGTTTGCTCAAAAGGACAGC  200

seq1  ACTTTTTTTCCCCTCTGTGGTTCGCGCTTACAGGCATGGTTTGGGAGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTTCCCCTCTGTGGTTCGCGCTTACAGGCATGGTTTGGGAGGTG  250

seq1  GGGAAATGGCTGCAGAAGAAAAGAATCTGATCAATTCTAAACACTGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATGGCTGCAGAAGAAAAGAATCTGATCAATTCTAAACACTGGCAG  300

seq1  TGCAGAGAGCTGCAGGATACAATGTGCTTGGCACTTCCACACCACAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGAGCTGCAGGATACAATGTGCTTGGCACTTCCACACCACAGCAT  350

seq1  CCAGCCTCATAAATATGGATGTGCGTTCCTGCCGCGTCACTCTCGAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCATAAATATGGATGTGCGTTCCTGCCGCGTCACTCTCGAGCAT  400

seq1  TCCATACTACAAAATGGTCCAAATGAAATGGACAAAATATAGTTCATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACTACAAAATGGTCCAAATGAAATGGACAAAATATAGTTCATTTC  450

seq1  TGCTCACATTCCAGCTGCAACAGTAGCTCCATTCATAGCCACTAGCAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACATTCCAGCTGCAACAGTAGCTCCATTCATAGCCACTAGCAGCA  500

seq1  CACGGAACGATTTCCACTCTCCTCTCCCGCTATAGCTGCGATGTGTGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGAACGATTTCCACTCTCCTCTCCCGCTATAGCTGCGATGTGTGCAC  550

seq1  AGACAGAGCTTGCAGGGGAGATAAACTCCAGGGCCAGCTTATAACAGCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGCTTGCAGGGGAGATAAACTCCAGGGCCAGCTTATAACAGCCG  600

seq1  GATTTTTCAGTCGTTGCTCACCTCTACTGTGGGTCATTCCGTGACGATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTCAGTCGTTGCTCACCTCTACTGTGGGTCATTCCGTGACGATGT  650

seq1  CCTGAGC-AACTGAAGGCAGTAAAAATAATTTATCCACATATGACACCTC  699
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCAAACTGAAGGCAGTAAAAATAATTTATCCACATATGACACCTC  700

seq1  ACCTCAACTTACCAGATGGATTTGAGCAGTGATCTCTTAGTTGCCAATAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAACTTACCAGATGGATTTGAGCAGTGATCTCTTAGTTGCCAATAC  750

seq1  ATCTTACAGAATGTCACAGTAACCCAATCTCCTTTGAGTCACCTAAAGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACAGAATGTCACAGTAACCCAATCTCCTTTGAGTCACCTAAAGGA  800

seq1  GGCATTTGGAGAAGGGCATGTGGCAGG-ATGTGAGAGACGGGTCCTTGAC  848
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGCATTTGGAGAAGGGCATGTGGCAGGAATGTGAGAGACGGGTCCTTGAC  850

seq1  CACCAGA-GGCCCAACCA-CGTAGAGTACT--GGGCTCCAAGCCC-TGCC  893
      ||||||| |||||||||| ||||||||| |  ||||||||||||| || |
seq2  CACCAGAGGGCCCAACCACCGTAGAGTAATTGGGGCTCCAAGCCCTTGTC  900

seq1  CCAACCTTGG--CCCACCAGCTCTTACCTAAAAA-CCTCAGGACAG-AGA  939
      ||||||||||  |||||||||||||||||||||| ||||||||||| | |
seq2  CCAACCTTGGGCCCCACCAGCTCTTACCTAAAAACCCTCAGGACAGAAAA  950

seq1  CCA-GCCCTGTTCCCAGTC-TCTTT-CACTG-CTGCTCAAAGTTCATCT-  984
      ||| ||||||||||||||| ||||| ||||| ||||||||||||||||| 
seq2  CCAGGCCCTGTTCCCAGTCTTCTTTCCACTGCCTGCTCAAAGTTCATCTC  1000

seq1  CCCTCT-GGTCCCCAGCCCG-AGTCTG-TATCCCGT-GGGGAATTTCAA-  1029
      |||||| ||||| || |||| ||| || | |||||| |||||||||||| 
seq2  CCCTCTGGGTCCTCAACCCGAAGTTTGTTTTCCCGTGGGGGAATTTCAAG  1050

seq1  GTTGGCCTTTACACTAAAGAGCACCTTGCCATTCTC-ATTAGCCTCGG-C  1077
      || |||||||| ||||||   ||||||||||| ||| |||| |||||| |
seq2  GTGGGCCTTTA-ACTAAAAGACACCTTGCCATCCTCAATTAACCTCGGCC  1099

seq1  AT-TGTTTACGAACACAGCA  1096
      || |||| ||||||||||||
seq2  ATGTGTTAACGAACACAGCA  1119