BAC Information

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BAC

Clone NameB6Ng01-181G01
Chromosome5 (Build37)
Map Location 109,080,963 - 109,082,070
singlet/doubletsinglet
Overlap geneDgkq
Upstream geneAW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175
Downstream geneIdua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181G01.bB6Ng01-181G01.g
ACCGA007554GA007555
length1,100917
definitionB6Ng01-181G01.b B6Ng01-181G01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgtcctctgctgccctctgtgcagctcttcccagccactgcc
agattctaagagtgatatctcaagtcagggagctccacctactggccaaa
aataatcctaggtacatggctacctgtgtaagggttggggcctacctagc
ctggcaggatgttaatatatggtcacaacacactctggacttaagtgggg
tgggtatcttgtggtgatctcaataggttaaaaattcacggttcataata
tgagaccagccttggtcccaatcatcatgtcagaaccatggacaaacact
gactctctgatctctgactatgatgtaaattggtttgtcttgtccatttt
gggttattgtaaggtaggctgaggtggcacataccagccatctggcaatg
aggacatggtcctggggcattaagctggcctcagagtcctaactactcac
cagcacatctggaagcactaatgcagtcagtggccggccatgcactgctg
tgtccctggccagcatgtatagccgctcagcctccgcgaagcaggtgacg
tccagaattactgcacctaccacaggtgggccaaagctcaagctggatgt
cctatgcaccctgcccacaaggtatccagtcaggtgtcctgtgtgtcctg
cccctaggtccccagagaagggtgtatcttgtccaccccatccaaaaggt
attcagggcagggtctgtcctatgaaatccacccccaaaatgtcacagcc
acaaagcctctcctctgtgacatgccaaccatgcacctaggcagagcctc
ggctctcaccacagccagctcatgtcagctgactacaggtggcatccaga
gtaaggggccaccctttccagcaaagtattcctacagaagcaggctgaac
tcaggtccaacagtggtaatgaagctagtctccctgaccagccatactca
cacccaatctaatgccttgagccactgcatggtctcttgagtgtcctggg
gttcacatgtccagaagctgacagttctgaattccccttgcccagtaaag
atgcagcccacagaaagacaaggactggataagctatctcagcacactgt

gaattcctgggtttttttaatgttactttaataatgtagtttttggatgt
ggtaaaaataaacatatcactttaagttaaacttgatataaatcagcaac
aaccaataagctacagatgcaatttgaagttatttggtcacatcacacat
ttaaaaaggattttacatatattctttatctctctctctctatctatctc
tatctctctttctgcaagtgggtccttctctttttctcttccccttgccc
ccttatccccatgacaacttccctggcctcagtccttggggccagtgaac
agcttcccagcttcccaataaatctgcctttaatattgaaaaaaaaaaaa
aggatcttacaaaaggtaacaatttcaacccttgtggagccaggtggcgg
tggtgctgctggcaatgcctataatcccatcacttgggaggcagagacag
gtggatctctgatttcaaggccaggtgagtctacagagtaagtttcagaa
cttccaggactacacaaaagacctttccccaaaaagggggtggggacaag
gaatatatatataaatataaatgtatggcatatattatatagttaatgtg
acatatcaaaatactatcaggcagagcatgtgacatgggcctctactgct
actcctaaggaagctgaagcaggaggatccctagagcccccaagtagaga
ccagactgacagcagactgtgttagtcactgttctattgatgtgaagaga
ccatgaacaaggcaactcttataaaagaacacatttaattgggagtttgt
gtacataggtttaatctattatcatcatgttggggagcatggcggcatgc
aaggcaggagcagtagctgagagttatatcttgatccataggtggggcgg
aggtaagggggtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_109080963_109082070
seq2: B6Ng01-181G01.b_43_1142

seq1  GAATTCTCTGTCCTCTGCTGCCCTCTGTGCAGCTCTTCCCAGCCACTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTCCTCTGCTGCCCTCTGTGCAGCTCTTCCCAGCCACTGCC  50

seq1  AGATTCTAAGAGTGATATCTCAAGTCAGGGAGCTCCACCTACTGGCCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTAAGAGTGATATCTCAAGTCAGGGAGCTCCACCTACTGGCCAAA  100

seq1  AATAATCCTAGGTACATGGCTACCTGTGTAAGGGTTGGGGCCTACCTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCCTAGGTACATGGCTACCTGTGTAAGGGTTGGGGCCTACCTAGC  150

seq1  CTGGCAGGATGTTAATATATGGTCACAACACACTCTGGACTTAAGTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGGATGTTAATATATGGTCACAACACACTCTGGACTTAAGTGGGG  200

seq1  TGGGTATCTTGTGGTGATCTCAATAGGTTAAAAATTCACGGTTCATAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATCTTGTGGTGATCTCAATAGGTTAAAAATTCACGGTTCATAATA  250

seq1  TGAGACCAGCCTTGGTCCCAATCATCATGTCAGAACCATGGACAAACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCAGCCTTGGTCCCAATCATCATGTCAGAACCATGGACAAACACT  300

seq1  GACTCTCTGATCTCTGACTATGATGTAAATTGGTTTGTCTTGTCCATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCTGATCTCTGACTATGATGTAAATTGGTTTGTCTTGTCCATTTT  350

seq1  GGGTTATTGTAAGGTAGGCTGAGGTGGCACATACCAGCCATCTGGCAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATTGTAAGGTAGGCTGAGGTGGCACATACCAGCCATCTGGCAATG  400

seq1  AGGACATGGTCCTGGGGCATTAAGCTGGCCTCAGAGTCCTAACTACTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATGGTCCTGGGGCATTAAGCTGGCCTCAGAGTCCTAACTACTCAC  450

seq1  CAGCACATCTGGAAGCACTAATGCAGTCAGTGGCCGGCCATGCACTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACATCTGGAAGCACTAATGCAGTCAGTGGCCGGCCATGCACTGCTG  500

seq1  TGTCCCTGGCCAGCATGTATAGCCGCTCAGCCTCCGCGAAGCAGGTGACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTGGCCAGCATGTATAGCCGCTCAGCCTCCGCGAAGCAGGTGACG  550

seq1  TCCAGAATTACTGCACCTACCACAGGTGGGCCAAAGCTCAAGCTGGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAATTACTGCACCTACCACAGGTGGGCCAAAGCTCAAGCTGGATGT  600

seq1  CCTATGCACCCTGCCCACAAGGTATCCAGTCAGGTGTCCTGTGTGTCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCACCCTGCCCACAAGGTATCCAGTCAGGTGTCCTGTGTGTCCTG  650

seq1  CCCCTAGGTCCCCAGAGAAGGGTGTATCTTGTCCACCCCATCCAAAAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAGGTCCCCAGAGAAGGGTGTATCTTGTCCACCCCATCCAAAAGGT  700

seq1  ATTCAGGGCAGGGTCTGTCCTATGAAATCCACCCCCAAAATGTCACAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGGCAGGGTCTGTCCTATGAAATCCACCCCCAAAATGTCACAGCC  750

seq1  ACAAAGCCTCTCCTCTGTGACATGCCAACCATGCACCTAGGCAGAGCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCCTCTCCTCTGTGACATGCCAACCATGCACCTAGGCAGAGCCTC  800

seq1  GGCTCTCACCACAGCCAGCTCATGTCAGCTGACTACAGGTGGCATCCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCACCACAGCCAGCTCATGTCAGCTGACTACAGGTGGCATCCAGA  850

seq1  GTAAGGGGCCACCC-TTCCAGCAAAGTATTCCTACAGAAGGCAGGCTGAA  899
      |||||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  GTAAGGGGCCACCCTTTCCAGCAAAGTATTCCTACAGAA-GCAGGCTGAA  899

seq1  CTCAGGGTCCAACAGTGGGTAATGAGGCTAGTCTCCCTGACCAGCCATAC  949
      |||| ||||||||||| |||||||| ||||||||||||||||||||||||
seq2  CTCA-GGTCCAACAGT-GGTAATGAAGCTAGTCTCCCTGACCAGCCATAC  947

seq1  TCACACCCAAATCTAATGCCTTGAG-CACTGCATGGTCTC-TGAGTGTCC  997
      |||||||| |||||||||||||||| |||||||||||||| |||||||||
seq2  TCACACCC-AATCTAATGCCTTGAGCCACTGCATGGTCTCTTGAGTGTCC  996

seq1  T-GGGTTCACATGTCAAGAAGGCTGACAGTTCTGAAATCCCCCTGCCCAG  1046
      | ||||||||||||| |||| ||||||||||||||| ||||| |||||||
seq2  TGGGGTTCACATGTCCAGAA-GCTGACAGTTCTGAATTCCCCTTGCCCAG  1045

seq1  TAAAAGATGCAGGCCCACAGAAAGGACAAAGACTGGGGAAAAGCTAATCT  1096
      | ||||||||| ||||||||||| ||||| ||||  ||| ||||| ||||
seq2  T-AAAGATGCA-GCCCACAGAAA-GACAAGGACT--GGATAAGCT-ATCT  1089

seq1  CAGCCACACTGT  1108
      ||| ||||||||
seq2  CAG-CACACTGT  1100