BAC Information

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BAC

Clone NameB6Ng01-182F20
Chromosome5 (Build37)
Map Location 26,575,189 - 26,753,142
singlet/doubletdoublet
Overlap geneLOC664837
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689
Downstream gene4930584F24Rik, Dpp6, B930011P16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182F20.bB6Ng01-182F20.g
ACCGA008275GA008276
length1,1671,121
definitionB6Ng01-182F20.b B6Ng01-182F20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,575,189 - 26,576,343)(26,752,031 - 26,753,142)
sequence
gaattcagttaaacagggaaggtttattgaatgcacaccccatgactgaa
caaccagggtaacagctgaaaactgtatgctaggcatttcttagggtcag
ctccatgaaaaaaaacacaaagagctcatgcacaagggctggaaatgctg
ccctgactcaagctgttttagacataatagttcatactgaccttgaattt
gaagtcttatgtgaagcatatagatgtggaatttcataagattaacaaac
cgcataacatacagaacgtaacagggtacatggtgagcataactctgctc
tgagccaagattttgttttgttttgttttatatccatgactgggaagcat
attacaggaacagcatgaaatagactgctggcttataagaaatttgctac
agatatggtatggtgcataccatacctagcaatacaaagttctctctgat
aaggagaacttatcagagagaactttgtatcactaggaaagaagtctgcg
tgacctaactatagccttaccttacaagatccatggtctcaacagaagct
ctttggaaggaggacagagaatgtgtttgttacctgtaataaggggcctc
agaagtattgctcagcctggtcagtgcccatttcaccttactctgtccat
gcagaggaacccaaggtgtcctcacaccttccctttgagctgtgtctagg
cacaaaaacgccagggcacagtgctggtgtcccactcctcacttatgctc
aattttcagctaatgtactttttaaacaaatacagtgtggtcacttgcta
ttgatagacttgacatcttactgagggcaccaactgcttgactacatgca
actctctaaaaattctgggccctgcaacatatatcaagattaaatctggg
ccccttctgctccactcgagcccgagtgtaccttgccagcggactcgccc
gacacccgcacgggccccacacaggattccccacggggatcctaagacct
ctggtgagtggaacacagcgcctgccccaatctaatcctcgcggaacctg
agaactgcgggaaatagggagcagactactggggccttgaactggggtca
caaagcccctttcgcttcactcctcagcccccagggtaacttttcaaggg
tgagtcgcctgaaaccc
gaattcatcatttcctgtggaacagtgtaagaattaaggctcatatagta
ttcctagcatgacccgtgtggtgcttttcttgggccactgattgcactga
ctctctgggaccatgtttggccaccctttctcctctgacctgtagtcgct
gacctgactcctgcactgccccttcttacacgcgtttgcgcgaccggcca
ggaaagacgcaacaaaccggaatcttctgcggcaaaagctttattgctta
catcttcaggagcaagagcgcaagagagagaatggcgaaacaccgtccct
tttaaggagaattatcctccgcctaggacgtgtcactccctgattggctg
cagcccatcggccgagttgtcgtcacggggaaggcagagcacatggagtg
gagaactacccttggcacatgcgcagattatttgtttaccacttagaaca
caggatgtcagcgccatcttgtaatggcaaatgtgagggtggcttcccac
agccccttcatttgcatttacagcaaggtgttggtattgcaggctgccag
tcaagtcttggctatgtttctaaaacatacattcatatcaactttataat
catcttaagatttctagtaaaatatgcctgctgggattccaactctgact
acatcaatccatgtgtcaatttggcatgaattcttattttaacaatatac
tggctcttccttttttttttatttgagttgagagactaacattggggaaa
gctgaatgtatttcatcatcaccttcatggtaccttcagggaaataataa
tatgccccttcaaatttttttgatattgatttgctttatttcttctgatc
aatacattgtgtttttacagattttctgaatattttgatatacttcccat
ttgaccttctctgtcaattattcttattggctttatggttcctattctct
gtttttatctcattcattttagttttttttcaaaattttgggaagtttat
gtatggaggagaaactctacgttctgtttcaaatgcagatcatactatgg
ttcattttcctatatacttccaaatgtttctgaagttttaggatatgttt
ttgatatacatgaacttttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_26575189_26576343
seq2: B6Ng01-182F20.b_45_1211

seq1  GAATTCAGTTAAACAGGGAAGGTTTATTGAATGCACACCCCATGACTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTAAACAGGGAAGGTTTATTGAATGCACACCCCATGACTGAA  50

seq1  CAACCAGGGTAACAGCTGAAAACTGTATGCTAGGCATTTCTTAGGGTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGGGTAACAGCTGAAAACTGTATGCTAGGCATTTCTTAGGGTCAG  100

seq1  CTCCATGAAAAAAAACACAAAGAGCTCATGCACAAGGGCTGGAAATGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGAAAAAAAACACAAAGAGCTCATGCACAAGGGCTGGAAATGCTG  150

seq1  CCCTGACTCAAGCTGTTTTAGACATAATAGTTCATACTGACCTTGAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACTCAAGCTGTTTTAGACATAATAGTTCATACTGACCTTGAATTT  200

seq1  GAAGTCTTATGTGAAGCATATAGATGTGGAATTTCATAAGATTAACAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTTATGTGAAGCATATAGATGTGGAATTTCATAAGATTAACAAAC  250

seq1  CGCATAACATACAGAACGTAACAGGGTACATGGTGAGCATAACTCTGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATAACATACAGAACGTAACAGGGTACATGGTGAGCATAACTCTGCTC  300

seq1  TGAGCCAAGATTTTGTTTTGTTTTGTTTTATATCCATGACTGGGAAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAAGATTTTGTTTTGTTTTGTTTTATATCCATGACTGGGAAGCAT  350

seq1  ATTACAGGAACAGCATGAAATAGACTGCTGGCTTATAAGAAATTTGCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGGAACAGCATGAAATAGACTGCTGGCTTATAAGAAATTTGCTAC  400

seq1  AGATATGGTATGGTGCATACCATACCTAGCAATACAAAGTTCTCTCTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGGTATGGTGCATACCATACCTAGCAATACAAAGTTCTCTCTGAT  450

seq1  AAGGAGAACTTATCAGAGAGAACTTTGTATCACTAGGAAAGAAGTCTGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAACTTATCAGAGAGAACTTTGTATCACTAGGAAAGAAGTCTGCG  500

seq1  TGACCTAACTATAGCCTTACCTTACAAGATCCATGGTCTCAACAGAAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAACTATAGCCTTACCTTACAAGATCCATGGTCTCAACAGAAGCT  550

seq1  CTTTGGAAGGAGGACAGAGAATGTGTTTGTTACCTGTAATAAGGGGCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAAGGAGGACAGAGAATGTGTTTGTTACCTGTAATAAGGGGCCTC  600

seq1  AGAAGTATTGCTCAGCCTGGTCAGTGCCCATTTCACCTTACTCTGTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTATTGCTCAGCCTGGTCAGTGCCCATTTCACCTTACTCTGTCCAT  650

seq1  GCAGAGGAACCCAAGGTGTCCTCACACCTTCCCTTTGAGCTGTGTCTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGAACCCAAGGTGTCCTCACACCTTCCCTTTGAGCTGTGTCTAGG  700

seq1  CACAAAAACGCCAGGGCACAGTGCTGGTGTCCCACTCCTCACTTATGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAACGCCAGGGCACAGTGCTGGTGTCCCACTCCTCACTTATGCTC  750

seq1  AATTTTCAGCTAATGTACTTTTTAAACAAATACAGTGTGGTCACTTGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCAGCTAATGTACTTTTTAAACAAATACAGTGTGGTCACTTGCTA  800

seq1  TTGATAGACTTGACATCTTACTGAGGGCACCAACTGCTTGACTACATGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGACTTGACATCTTACTGAGGGCACCAACTGCTTGACTACATGCA  850

seq1  ACTCTCTAAAAATTCTGGGCCCTGCAACATATATCAAGA-TAAATCTGGG  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACTCTCTAAAAATTCTGGGCCCTGCAACATATATCAAGATTAAATCTGGG  900

seq1  CCCCTTCTGCTCCACTCGAGCCCGAGTGTACCTTGCCAGCGGACTCGCCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCTGCTCCACTCGAGCCCGAGTGTACCTTGCCAGCGGACTCGCCC  950

seq1  GACACCCGCACGGG-CCCACACAGGATTCCCCAC-GGGATCCTAAGACCT  997
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  GACACCCGCACGGGCCCCACACAGGATTCCCCACGGGGATCCTAAGACCT  1000

seq1  CTGGTGAGTGGAACACAGCGCCTGCCCCAATCCAAT-CTCGCGGAACCTG  1046
      |||||||||||||||||||||||||||||||| ||| |||||||||||||
seq2  CTGGTGAGTGGAACACAGCGCCTGCCCCAATCTAATCCTCGCGGAACCTG  1050

seq1  AG-ACTGCGGGAAATAGGGAAGCAGACTACCGGGGCC-TGACCTGGGG-C  1093
      || |||||||||||||||| |||||||||| |||||| ||| |||||| |
seq2  AGAACTGCGGGAAATAGGG-AGCAGACTACTGGGGCCTTGAACTGGGGTC  1099

seq1  AC-AAGCCCCTTCCGCTCCACTC--CAG-CCCCAGGGTACC--TTGCAGG  1137
      || ||||||||| |||| |||||  ||| |||||||||| |  ||  |||
seq2  ACAAAGCCCCTTTCGCTTCACTCCTCAGCCCCCAGGGTAACTTTTCAAGG  1149

seq1  TGGAGTCGCCTGACACCC  1155
        ||||||||||| ||||
seq2  GTGAGTCGCCTGAAACCC  1167

seq1: chr5_26752031_26753142
seq2: B6Ng01-182F20.g_68_1188 (reverse)

seq1  TCAAAAATTCATGTAT-CAAAAAACATATCACAAAAATTTCAG-AACATT  48
      |||||| |||||||||   ||||||||||| | |||| ||||| ||||||
seq2  TCAAAAGTTCATGTATATCAAAAACATATC-CTAAAACTTCAGAAACATT  49

seq1  TGAAGTTAATTATAGGGAAAATGAA-CATAGTATGATCTGCATTTGAAAC  97
      || |  ||  |||| |||||||||| ||||||||||||||||||||||||
seq2  TGGAAGTA--TATA-GGAAAATGAACCATAGTATGATCTGCATTTGAAAC  96

seq1  AGGAACGTAGAG-TTCTCCT-CATACATAAACTTCC--AAATTTTGAAAA  143
      | |||||||||| ||||||| |||||||||||||||  ||||||||||||
seq2  A-GAACGTAGAGTTTCTCCTCCATACATAAACTTCCCAAAATTTTGAAAA  145

seq1  AAAACTAAAATGAATGAGATAAAAAACAGAG-ATAAGAA-CATAAAG-CA  190
      |||||||||||||||||||| |||||||||| ||| ||| ||||||| ||
seq2  AAAACTAAAATGAATGAGAT-AAAAACAGAGAATAGGAACCATAAAGCCA  194

seq1  ATAAG-ATAATTGACAGAGAAGGTCAAAT-GGAAGTATATCAAAATATTC  238
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATAAGAATAATTGACAGAGAAGGTCAAATGGGAAGTATATCAAAATATTC  244

seq1  AGAAAATCTGT-AAAACACAATGTATTGATCAGAAGAAATAAAGCAAATC  287
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCTGTAAAAACACAATGTATTGATCAGAAGAAATAAAGCAAATC  294

seq1  AATATC-AAAAAATTTGAAGGGGCATATTATTATTTCCCTGAAGGTACCA  336
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAAAAAAATTTGAAGGGGCATATTATTATTTCCCTGAAGGTACCA  344

seq1  TGAAGGTGATGATGAAATACATTCAGCTTTCCCCAATGTTAGTCTCTCAA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTGATGATGAAATACATTCAGCTTTCCCCAATGTTAGTCTCTCAA  394

seq1  CTCAAAT-AAAAAAAAAGGAAGAGCCAGTATATTGTTAAAATAAGAATTC  435
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATAAAAAAAAAAGGAAGAGCCAGTATATTGTTAAAATAAGAATTC  444

seq1  ATGCCAAATTGACACATGGATTGATGTAGTCAGAGTTGGAATCCCAGCAG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAATTGACACATGGATTGATGTAGTCAGAGTTGGAATCCCAGCAG  494

seq1  GCATATTTTACTAGAAATCTTAAGATGATTATAAAGTTGATATGAATGTA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTTACTAGAAATCTTAAGATGATTATAAAGTTGATATGAATGTA  544

seq1  TGTTTTAGAAACATAGCCAAGACTTGACTGGCAGCCTGCAATACCAACAC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAGAAACATAGCCAAGACTTGACTGGCAGCCTGCAATACCAACAC  594

seq1  CTTGCTGTAAATGCAAATGAAGGGGCTGTGGGAAGCCACCCTCACATTTG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGTAAATGCAAATGAAGGGGCTGTGGGAAGCCACCCTCACATTTG  644

seq1  CCATTACAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAA  694

seq1  TCTGCGCATGTGCCAAGGGTAGTTCTCCACTCCATGTGCTCTGCCTTCCC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGCATGTGCCAAGGGTAGTTCTCCACTCCATGTGCTCTGCCTTCCC  744

seq1  CGTGACGACAACTCGGCCGATGGGCTGCAGCCAATCAGGGAGTGACACGT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACGACAACTCGGCCGATGGGCTGCAGCCAATCAGGGAGTGACACGT  794

seq1  CCTAGGCGGAGGATAATTCTCCTTAAAAGGGACGGTGTTTCGCCATTCTC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGCGGAGGATAATTCTCCTTAAAAGGGACGGTGTTTCGCCATTCTC  844

seq1  TCTCTTGCGCTCTTGCTCCTGAAGATGTAAGCAATAAAGCTTTTGCCGCA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGCGCTCTTGCTCCTGAAGATGTAAGCAATAAAGCTTTTGCCGCA  894

seq1  GAAGATTCCGGTTTGTTGCGTCTTTCCTGGCCGGTCGCGCAAACGCGTGT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTCCGGTTTGTTGCGTCTTTCCTGGCCGGTCGCGCAAACGCGTGT  944

seq1  AAGAAGGGGCAGTGCAGGAGTCAGGTCAGCGACTACAGGTCAGAGGAGAA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGGGCAGTGCAGGAGTCAGGTCAGCGACTACAGGTCAGAGGAGAA  994

seq1  AGGGTGGCCAAACATGGTCCCAGAGAGTCAGTGCAATCAGTGGCCCAAGA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGCCAAACATGGTCCCAGAGAGTCAGTGCAATCAGTGGCCCAAGA  1044

seq1  AAAGCACCACACGGGTCATGCTAGGAATACTATATGAGCCTTAATTCTTA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACCACACGGGTCATGCTAGGAATACTATATGAGCCTTAATTCTTA  1094

seq1  CACTGTTCCACAGGAAATGATGAATTC  1112
      |||||||||||||||||||||||||||
seq2  CACTGTTCCACAGGAAATGATGAATTC  1121