BAC Information

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BAC

Clone NameB6Ng01-182I10
Chromosome5 (Build37)
Map Location 40,832,945 - 40,834,052
singlet/doubletsinglet
Overlap genenone
Upstream geneHs3st1, EG665839, LOC100040502
Downstream geneLOC208522
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182I10.g
ACCGA008391
length1,109
definitionB6Ng01-182I10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatgtagctttgatgtttgcaacttatactctaaagataggtag
aaagatgatagaaaaatagatagctataccaggtggtggaaaataagaca
gaaatcttgtggtcagtaactcatatttaaggttttcttttagttttctc
tgcttcaaacgccctgcattgatcatagacttttaattatctataggtaa
gacattatgtttttttcacagaaaccttataaggttttagtcaaagtaag
attttatttttaattttttctagagagagaagattatggctttaaggttt
actgtgtgacacagggaagtgaaaacattaaagaaccttttatggtctga
ttgtgccaccctctcccactcatattttaaatccaatgtttctcaatgtg
cagaaaaggcttttatgggtgaatggtggaagagttcatagggtagccct
aatgctaagtcatataattgccaagtcaagaagaggaatcaaaagagaag
ttttcagaaagatcctgctcttttttccattctcctcctcctcctcctcc
ttctcctctctctctccctttctctctctctctctctctctctctctctc
tctctctctctcgctcgctcgcttgctcgctctctctcccctcccccctg
ccctctgtgtgtgtgtgtctgcatgtgtgtgtaaagggtgtcttgtgaat
gtgcacaaaggcaaggccactagagtagagaacaagaagtaatttgcacc
ataaagggagagaagtcttaccaacttgctgaagcttaaatataagactt
gatggcaccagaattttgagaaaataaatgtggcatgctaagccacctgg
cctatggtattttgatatagcgtcactgagaatactaattaaagggatgt
ttttcattccaggacagcacagtgtgtaaatgaagttttaatttctgggg
agctacaggattgctgcacatatgagtcatttcacaagaaaactgagctc
ctgcacagtcttctagcaggcatacactgttgatcaacttgcatgggttg
ttaatgtcctcagcttgcaatctaggaaaattgaactttttaatgtttag
atgtaaagg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_40832945_40834052
seq2: B6Ng01-182I10.g_59_1167

seq1  GAATTCTATGTAGCTTTGATGTTTGCAACTTATACTCTAAAGATAGGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTAGCTTTGATGTTTGCAACTTATACTCTAAAGATAGGTAG  50

seq1  AAAGATGATAGAAAAATAGATAGCTATACCAGGTGGTGGAAAATAAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGATAGAAAAATAGATAGCTATACCAGGTGGTGGAAAATAAGACA  100

seq1  GAAATCTTGTGGTCAGTAACTCATATTTAAGGTTTTCTTTTAGTTTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTTGTGGTCAGTAACTCATATTTAAGGTTTTCTTTTAGTTTTCTC  150

seq1  TGCTTCAAACGCCCTGCATTGATCATAGACTTTTAATTATCTATAGGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAAACGCCCTGCATTGATCATAGACTTTTAATTATCTATAGGTAA  200

seq1  GACATTATGTTTTTTTCACAGAAACCTTATAAGGTTTTAGTCAAAGTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTATGTTTTTTTCACAGAAACCTTATAAGGTTTTAGTCAAAGTAAG  250

seq1  ATTTTATTTTTAATTTTTTCTAGAGAGAGAAGATTATGGCTTTAAGGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTTAATTTTTTCTAGAGAGAGAAGATTATGGCTTTAAGGTTT  300

seq1  ACTGTGTGACACAGGGAAGTGAAAACATTAAAGAACCTTTTATGGTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTGACACAGGGAAGTGAAAACATTAAAGAACCTTTTATGGTCTGA  350

seq1  TTGTGCCACCCTCTCCCACTCATATTTTAAATCCAATGTTTCTCAATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCACCCTCTCCCACTCATATTTTAAATCCAATGTTTCTCAATGTG  400

seq1  CAGAAAAGGCTTTTATGGGTGAATGGTGGAAGAGTTCATAGGGTAGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGGCTTTTATGGGTGAATGGTGGAAGAGTTCATAGGGTAGCCCT  450

seq1  AATGCTAAGTCATATAATTGCCAAGTCAAGAAGAGGAATCAAAAGAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAAGTCATATAATTGCCAAGTCAAGAAGAGGAATCAAAAGAGAAG  500

seq1  TTTTCAGAAAGATCCTGCTCTTTTTTCCATTCTCCTCCTCCTCCTCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGAAAGATCCTGCTCTTTTTTCCATTCTCCTCCTCCTCCTCCTCC  550

seq1  TTCTCCTCTCTCTCTCCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCTCTCTCTCCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  600

seq1  TCTCTCTCTCTCGCTCGCTCGCTTGCTCGCTCTCTCTCCCCTCCCCCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCGCTCGCTCGCTTGCTCGCTCTCTCTCCCCTCCCCCCTG  650

seq1  CCCTCTGTGTGTGTGTGTCTGCATGTGTGTGTAAAGGGTGTCTTGTGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGTGTGTGTGTGTCTGCATGTGTGTGTAAAGGGTGTCTTGTGAAT  700

seq1  GTGCACAAAGGCAAGGCCACTAGAGTAGAGAACAAGAAGTAATTTGCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACAAAGGCAAGGCCACTAGAGTAGAGAACAAGAAGTAATTTGCACC  750

seq1  ATAAAGGGAGAGAAGTCTTACCAACTTGCTGAAGCTTAAATATAAGACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGGAGAGAAGTCTTACCAACTTGCTGAAGCTTAAATATAAGACTT  800

seq1  GATGGCACCAGAATTTTGAGAAAATAAATGTGGCATGCTAAGCCACCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCACCAGAATTTTGAGAAAATAAATGTGGCATGCTAAGCCACCTGG  850

seq1  CCTATGGTATTTTGATATAGCGTCACTGAGAATACTAATTAAA-GGATG-  898
      ||||||||||||||||||||||||||||||||||||||||||| ||||| 
seq2  CCTATGGTATTTTGATATAGCGTCACTGAGAATACTAATTAAAGGGATGT  900

seq1  TTATCAATCCA-GACAGCACAGTGTGTAAATGAAG-TTTAATTTCTGGGG  946
      || ||| |||| ||||||||||||||||||||||| ||||||||||||||
seq2  TTTTCATTCCAGGACAGCACAGTGTGTAAATGAAGTTTTAATTTCTGGGG  950

seq1  AGCTACAGGGATTGCTGCACATATGAGTCATTTCACAAGAAAGCTGAGCT  996
      ||||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  AGCTACA-GGATTGCTGCACATATGAGTCATTTCACAAGAAAACTGAGCT  999

seq1  CCTGCACAGTCTTCTAGCAGGCATACACTGTTGATC-ACCTGCATGGTGT  1045
      |||||||||||||||||||||||||||||||||||| || |||||||  |
seq2  CCTGCACAGTCTTCTAGCAGGCATACACTGTTGATCAACTTGCATGGGTT  1049

seq1  GTTAATGTCCTCAAGCTTGCATCCATAGGGAAAATGAACTTTTTTAAATG  1095
      |||||||||||| ||||||||  | |||| ||| ||||||||||  ||||
seq2  GTTAATGTCCTC-AGCTTGCAATC-TAGGAAAATTGAACTTTTT--AATG  1095

seq1  TTTAGATG-AAAGG  1108
      |||||||| |||||
seq2  TTTAGATGTAAAGG  1109


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