BAC Information

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BAC

Clone NameB6Ng01-182J22
Chromosome5 (Build37)
Map Location 49,490,752 - 49,491,810
singlet/doubletsinglet
Overlap genenone
Upstream geneSlit2, 4933428G09Rik, Kcnip4, LOC100041668
Downstream geneLOC100041659, EG433885, LOC666223, Gpr125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182J22.bB6Ng01-182J22.g
ACCGA008461GA008462
length5001,071
definitionB6Ng01-182J22.b B6Ng01-182J22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttatgaaattcctatgcaaatggatggacctggagggca
tcatcctgagtaaggtaacccaatcacaaaagaactcacacaatatgtac
tcactgataatattagcccagaaacttagaacacacaagatataagatac
aatttgcaaaacacatgaaactcaagaagaacaaagaccaaagtgtggac
actttgccctttcttaaaattgggaacaaaacacccattgaagaggatgg
accatctagaaactgccatatctagggatccatcccataatcagcttcca
aaagctgacaccattgcatacactagcaagattttgctgaaaagactcag
atatagctgtcccttgtgagactatgccggggcctagcaaacacagaagt
ggatgctcacagtcagctattggatggatcacagggcccccaatggagga
gctagagaaagtaaccaaggagctaagggatctgcaaccctgtaggagga


gaattctctgtggaaacataggctgtgcttgaagtggttatactttattg
tgtagatatcaataatctgatgatatcttttctaaactatctatctttgt
cctctgtgtgctatgtacaagacattaaacttgcagtgattcaattgcct
agagttagtgacaacatactttctctgctgagctgaaaatggttttatac
tgaagatgacatgttgctgtcatgttttgaaggcataaataccacttaga
aacaaaaacaccatatgcaaataactgaaatagtttgattctaaggttcc
ctcagggaaggtgcattgtctacaaagggcagagtgcagctttctgttat
ggttctttgggtttcttagatctgacagtcccacattaaaaactgggtaa
cagtgatgttagcagcatccctttgcaccaggtctttgtctgctgataaa
atgtacccagctcctttttttaaaaaaaaaaatctatttatgcctgtttc
ctgtttccacatagaggagatggcacagtcacatttctgtaaaactttct
tgtcacgctctccaaatctttccctctctctgggtctaatggacacaggg
actcagtagaagcaagttttctatgccactgtttaatccaaatagctggc
ttgttttgcttccttgtgtggctatctaaatgagatctaactgaagacaa
gaagaaagtggtggagttgagaggaaagttaacaaagtgatcctgatgaa
gtagatgataagagttaatgaggatttagtgtgcagcatgcaaaaggctc
agtagcttgcctgtgctgttcttccacgtcttagagcagaacactgaaga
aaatgctattcagttagaagaataaatatctttagagttattttaataac
tttaagttcttgccaggtattcaagagaccaattctagatttccaaggtc
atattttttcttattctattatgcaacagataagggattcaaaatttact
aattacaggcacccttattttttttttcctacttaaaatagtttctcatg
tcactttaattggagacctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_49490752_49491810
seq2: B6Ng01-182J22.g_66_1136 (reverse)

seq1  TTAGTTCTCAAATTTAAGTGACATGAGGAACTATTTTAAGTAAGAAAAAA  50
      |||| |||| |||| |||||||||||| |||||||||||||| |||||||
seq2  TTAGGTCTCCAATTAAAGTGACATGAGAAACTATTTTAAGTAGGAAAAAA  50

seq1  AATA----GGTGCCTGT-ATTATGTAATTTTGAATCCTTTATCTGTTGCA  95
      || |    ||||||||| ||||   |||||||||||| ||||||||||||
seq2  AAAATAAGGGTGCCTGTAATTAGTAAATTTTGAATCCCTTATCTGTTGCA  100

seq1  TAATAGAATAAGAAAAAAATATGA-CTTTGAAATCTAG-ATTTGTCTCTT  143
      |||||||||||| ||||||||||| ||| ||||||||| ||| |||||||
seq2  TAATAGAATAAG-AAAAAATATGACCTTGGAAATCTAGAATTGGTCTCTT  149

seq1  G-ATACCT-GCAAGAACTT-AAGTTATT-AAATAACTCTAAAGATATTTA  189
      | |||||| |||||||||| |||||||| |||||||||||||||||||||
seq2  GAATACCTGGCAAGAACTTAAAGTTATTAAAATAACTCTAAAGATATTTA  199

seq1  TTCTTCT-ACTG-ATAGCATTTTCTTCAGTGTTCTGCTCTAAGACGTGGA  237
      ||||||| |||| |||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTAACTGAATAGCATTTTCTTCAGTGTTCTGCTCTAAGACGTGGA  249

seq1  AGAACAGCACAGGCAAGCTACTGAGCCTTTTGCATGCTGCACACTAAATC  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGCACAGGCAAGCTACTGAGCCTTTTGCATGCTGCACACTAAATC  299

seq1  CTCATTAACTCTTATCATCTACTTCATCAGGATCACTTTGTTAACTTTCC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAACTCTTATCATCTACTTCATCAGGATCACTTTGTTAACTTTCC  349

seq1  TCTCAACTCCACCACTTTCTTCTTGTCTTCAGTTAGATCTCATTTAGATA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACTCCACCACTTTCTTCTTGTCTTCAGTTAGATCTCATTTAGATA  399

seq1  GCCACACAAGGAAGCAAAACAAGCCAGCTATTTGGATTAAACAGTGGCAT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACAAGGAAGCAAAACAAGCCAGCTATTTGGATTAAACAGTGGCAT  449

seq1  AGAAAACTTGCTTCTACTGAGTCCCTGTGTCCATTAGACCCAGAGAGAGG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTTGCTTCTACTGAGTCCCTGTGTCCATTAGACCCAGAGAGAGG  499

seq1  GAAAGATTTGGAGAGCGTGACAAGAAAGTTTTACAGAAATGTGACTGTGC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATTTGGAGAGCGTGACAAGAAAGTTTTACAGAAATGTGACTGTGC  549

seq1  CATCTCCTCTATGTGGAAACAGGAAACAGGCATAAATAGATTTTTTTTTT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCTCTATGTGGAAACAGGAAACAGGCATAAATAGATTTTTTTTTT  599

seq1  TAAAAAAAGGAGCTGGGTACATTTTATCAGCAGACAAAGACCTGGTGCAA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAGGAGCTGGGTACATTTTATCAGCAGACAAAGACCTGGTGCAA  649

seq1  AGGGATGCTGCTAACATCACTGTTACCCAGTTTTTAATGTGGGACTGTCA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGCTGCTAACATCACTGTTACCCAGTTTTTAATGTGGGACTGTCA  699

seq1  GATCTAAGAAACCCAAAGAACCATAACAGAAAGCTGCACTCTGCCCTTTG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAAGAAACCCAAAGAACCATAACAGAAAGCTGCACTCTGCCCTTTG  749

seq1  TAGACAATGCACCTTCCCTGAGGGAACCTTAGAATCAAACTATTTCAGTT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAATGCACCTTCCCTGAGGGAACCTTAGAATCAAACTATTTCAGTT  799

seq1  ATTTGCATATGGTGTTTTTGTTTCTAAGTGGTATTTATGCCTTCAAAACA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCATATGGTGTTTTTGTTTCTAAGTGGTATTTATGCCTTCAAAACA  849

seq1  TGACAGCAACATGTCATCTTCAGTATAAAACCATTTTCAGCTCAGCAGAG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCAACATGTCATCTTCAGTATAAAACCATTTTCAGCTCAGCAGAG  899

seq1  AAAGTATGTTGTCACTAACTCTAGGCAATTGAATCACTGCAAGTTTAATG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATGTTGTCACTAACTCTAGGCAATTGAATCACTGCAAGTTTAATG  949

seq1  TCTTGTACATAGCACACAGAGGACAAAGATAGATAGTTTAGAAAAGATAT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTACATAGCACACAGAGGACAAAGATAGATAGTTTAGAAAAGATAT  999

seq1  CATCAGATTATTGATATCTACACAATAAAGTATAACCACTTCAAGCACAG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGATTATTGATATCTACACAATAAAGTATAACCACTTCAAGCACAG  1049

seq1  CCTATGTTTCCACAGAGAATTC  1059
      ||||||||||||||||||||||
seq2  CCTATGTTTCCACAGAGAATTC  1071


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