BAC Information

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BAC

Clone NameB6Ng01-182N02
Chromosome5 (Build37)
Map Location 48,924,381 - 49,155,562
singlet/doubletdoublet
Overlap geneKcnip4
Upstream geneLOC100040865, LOC100040876, Slit2, 4933428G09Rik
Downstream geneLOC100041668, LOC100041659, EG433885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182N02.bB6Ng01-182N02.g
ACCGA008607GA008608
length1,083922
definitionB6Ng01-182N02.b B6Ng01-182N02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,154,490 - 49,155,562)(48,924,381 - 48,925,303)
sequence
gaattcaatgtttatgtataaattgtgtggcttggctgacacagtgcaaa
tggatatcttactataagtatttagaatgagcatttataatattaccttt
aggttttatatatctgcagttaatcttcatttcaatttcatgtagatata
atacctaaggaaacatggatattatttgtgatattgtcatattgtttgta
atttgcattgaatgattgtgatgcgtttcagtttatgtctcatttgctcc
ctgtctgagatacaacattatagcattattttttatggcctctttatcac
acctgatgatcttcccttgcctttacctctcagaatcaataatcaaaact
aaaatacatagaagattcatattttcatataatgacttatgtttgacaat
cacaaataccgttttattatctgagctctatcatggggttttgaggactt
tcatagttcactacaagctatttcctcaaagcaacttcacttaaacatgt
gaagaaatcacatgttctcctaaattattaactcatagcttaatttacct
gaaaatatttccttcattgtgataaaattaacttgttaccttatgaaatt
aagtattttcacacagagttcagaaatccattttctatattgaataccag
gaacaattccccaaataagccttcactaactaatatttgacattccatta
aaggctagtccatttccatatttcttcttttcctactcgttttctgtagt
agtgagacagttaaatacatagattctatataagtagaacttttcacttt
gctctctacaggaggaagatgtcaaggcattattttgatatatagaggat
catctacaatttatgtacaacagatataatgtaggtctcattgcttaaac
attcaaaggttttttctggaaaaaaaaatatcagaaatagaacctaagaa
gttgtttaatcattgtatggttaccacccagtctgaccaccattccaatt
tcaatctcagtatcagaagccctacctcagaaagattaagaagaatgaga
aagacagaagagggagggcacttctgctgaaaa

gaattccaggacctgggaggtggagggaagcaagagttaagggtatatag
tatatccttatactggggtatatagtaactttcaggcaatcctggccaac
aactgaagacctccttgtctcaaaataaaagaaacaaaaccaaaatcata
attaaaatccaaccaatactaccagaaaaacaaggtgctggagactaact
ccttgtttggtacttgctgtctaccatcagcaccactgaactaatgataa
tcataaaaaataccaatagaggaaggttactgtgaaggtcagaggcaagg
tgtctgcagagctggcagacaagaacatagtcctctcattatcttaagta
ctatatgtaacagagcttactctagatatctttgtaagaaattggaaaaa
aaaagtcttctgatttcgtttgatttagaaaaagatgtcatgtttagcct
aggttggcttcaaaccagtaagtctcctgcttctacctcccaagtcctac
gataacagaatgtaccaccatgctcagcaccacaaagaaatctttttttt
tttccttgtattgtggtttgcgattgtaatcctggtattctggaggcaag
aggattgttttaaatttgaggccaacctcagttatagagtgaaatcctgg
ttcaagagaaaccaaagctgaaatgcttaagaagtcgcccagaggtcttc
tccaagtcaaactttgagtcttattacagaggtgtgctcaacacaacctc
tggaagtctgcagacaggtgttggtcagtgtatttggagtgtccactgaa
ttaacctccccaaaagtcctggacacagtttggtttcagtcattctcaac
ctaatggatattcatctttgtacattattctgattttagaaggcaggagc
actttatatgatgtgaccttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_49154490_49155562
seq2: B6Ng01-182N02.b_47_1129 (reverse)

seq1  TTTTCAGCAG-AGTGCCCTCCCTC-TCTGTCTTTCTCCTTCTTCTTAATC  48
      |||||||||| ||||||||||||| |||||||||||| ||||||||||||
seq2  TTTTCAGCAGAAGTGCCCTCCCTCTTCTGTCTTTCTCATTCTTCTTAATC  50

seq1  TTTTCTGA-GTA-GGCTTCTGATACTGAGATTGAAA-TGGAATGGT-GTC  94
       ||||||| ||| ||||||||||||||||||||||| ||||||||| |||
seq2  -TTTCTGAGGTAGGGCTTCTGATACTGAGATTGAAATTGGAATGGTGGTC  99

seq1  AGACTGGGTGGTAA-CATACAATGATTAAACAACTTCTTAGGTTCTATTT  143
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGACTGGGTGGTAACCATACAATGATTAAACAACTTCTTAGGTTCTATTT  149

seq1  CTGATA-TTTTTTTTCCAG-AAAAACCTTTGAATGTTTAAGCAATGAGAC  191
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGATATTTTTTTTTCCAGAAAAAACCTTTGAATGTTTAAGCAATGAGAC  199

seq1  CTACATTATATCTGTTGTACATAAATTGTAGATGATCCTCTATATATC-A  240
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTACATTATATCTGTTGTACATAAATTGTAGATGATCCTCTATATATCAA  249

seq1  AATAATGCCTTGACATCTTCCTCCTGTAGAGAGCAAAGTG-AAAGTTCTA  289
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AATAATGCCTTGACATCTTCCTCCTGTAGAGAGCAAAGTGAAAAGTTCTA  299

seq1  CTTATATAGAATCTATGTATTTAACTGTCTCACTACTACAGAAAACGAGT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATAGAATCTATGTATTTAACTGTCTCACTACTACAGAAAACGAGT  349

seq1  AGGAAAAGAAGAAATATGGAAATGGACTAGCCTTTAATGGAATGTCAAAT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGAAGAAATATGGAAATGGACTAGCCTTTAATGGAATGTCAAAT  399

seq1  ATTAGTTAGTGAAGGCTTATTTGGGGAATTGTTCCTGGTATTCAATATAG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTAGTGAAGGCTTATTTGGGGAATTGTTCCTGGTATTCAATATAG  449

seq1  AAAATGGATTTCTGAACTCTGTGTGAAAATACTTAATTTCATAAGGTAAC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGATTTCTGAACTCTGTGTGAAAATACTTAATTTCATAAGGTAAC  499

seq1  AAGTTAATTTTATCACAATGAAGGAAATATTTTCAGGTAAATTAAGCTAT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAATTTTATCACAATGAAGGAAATATTTTCAGGTAAATTAAGCTAT  549

seq1  GAGTTAATAATTTAGGAGAACATGTGATTTCTTCACATGTTTAAGTGAAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAATAATTTAGGAGAACATGTGATTTCTTCACATGTTTAAGTGAAG  599

seq1  TTGCTTTGAGGAAATAGCTTGTAGTGAACTATGAAAGTCCTCAAAACCCC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGAGGAAATAGCTTGTAGTGAACTATGAAAGTCCTCAAAACCCC  649

seq1  ATGATAGAGCTCAGATAATAAAACGGTATTTGTGATTGTCAAACATAAGT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGAGCTCAGATAATAAAACGGTATTTGTGATTGTCAAACATAAGT  699

seq1  CATTATATGAAAATATGAATCTTCTATGTATTTTAGTTTTGATTATTGAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATATGAAAATATGAATCTTCTATGTATTTTAGTTTTGATTATTGAT  749

seq1  TCTGAGAGGTAAAGGCAAGGGAAGATCATCAGGTGTGATAAAGAGGCCAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAGGTAAAGGCAAGGGAAGATCATCAGGTGTGATAAAGAGGCCAT  799

seq1  AAAAAATAATGCTATAATGTTGTATCTCAGACAGGGAGCAAATGAGACAT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAATGCTATAATGTTGTATCTCAGACAGGGAGCAAATGAGACAT  849

seq1  AAACTGAAACGCATCACAATCATTCAATGCAAATTACAAACAATATGACA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAAACGCATCACAATCATTCAATGCAAATTACAAACAATATGACA  899

seq1  ATATCACAAATAATATCCATGTTTCCTTAGGTATTATATCTACATGAAAT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACAAATAATATCCATGTTTCCTTAGGTATTATATCTACATGAAAT  949

seq1  TGAAATGAAGATTAACTGCAGATATATAAAACCTAAAGGTAATATTATAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGAAGATTAACTGCAGATATATAAAACCTAAAGGTAATATTATAA  999

seq1  ATGCTCATTCTAAATACTTATAGTAAGATATCCATTTGCACTGTGTCAGC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCATTCTAAATACTTATAGTAAGATATCCATTTGCACTGTGTCAGC  1049

seq1  CAAGCCACACAATTTATACATAAACATTGAATTC  1073
      ||||||||||||||||||||||||||||||||||
seq2  CAAGCCACACAATTTATACATAAACATTGAATTC  1083


seq1: chr5_48924381_48925303
seq2: B6Ng01-182N02.g_68_989

seq1  GAATTCCAGGACCTGGGAGGTGGAGGGAAGCAAGAGTTAAGGGTATATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACCTGGGAGGTGGAGGGAAGCAAGAGTTAAGGGTATATAG  50

seq1  TATATCCTTATACTGGGGTATATAGTAACTTTCAGGCAATCCTGGCCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCTTATACTGGGGTATATAGTAACTTTCAGGCAATCCTGGCCAAC  100

seq1  AACTGAAGACCTCCTTGTCTCAAAATAAAAGAAACAAAACCAAAATCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAGACCTCCTTGTCTCAAAATAAAAGAAACAAAACCAAAATCATA  150

seq1  ATTAAAATCCAACCAATACTACCAGAAAAACAAGGTGCTGGAGACTAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATCCAACCAATACTACCAGAAAAACAAGGTGCTGGAGACTAACT  200

seq1  CCTTGTTTGGTACTTGCTGTCTACCATCAGCACCACTGAACTAATGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTTGGTACTTGCTGTCTACCATCAGCACCACTGAACTAATGATAA  250

seq1  TCATAAAAAATACCAATAGAGGAAGGTTACTGTGAAGGTCAGAGGCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAAAATACCAATAGAGGAAGGTTACTGTGAAGGTCAGAGGCAAGG  300

seq1  TGTCTGCAGAGCTGGCAGACAAGAACATAGTCCTCTCATTATCTTAAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCAGAGCTGGCAGACAAGAACATAGTCCTCTCATTATCTTAAGTA  350

seq1  CTATATGTAACAGAGCTTACTCTAGATATCTTTGTAAGAAATTGGAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGTAACAGAGCTTACTCTAGATATCTTTGTAAGAAATTGGAAAAA  400

seq1  AAAAGTCTTCTGATTTCGTTTGATTTAGAAAAAGATGTCATGTTTAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCTTCTGATTTCGTTTGATTTAGAAAAAGATGTCATGTTTAGCCT  450

seq1  AGGTTGGCTTCAAACCAGTAAGTCTCCTGCTTCTACCTCCCAAGTCCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGCTTCAAACCAGTAAGTCTCCTGCTTCTACCTCCCAAGTCCTAC  500

seq1  GATAACAGAATGTACCACCATGCTCAGCACCACAAAGAAATCTTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACAGAATGTACCACCATGCTCAGCACCACAAAGAAATCTTTTTTTT  550

seq1  TTTCCTTGTATTGTGGTTTGCGATTGTAATCCTGGTATTCTGGAGGCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGTATTGTGGTTTGCGATTGTAATCCTGGTATTCTGGAGGCAAG  600

seq1  AGGATTGTTTTAAATTTGAGGCCAACCTCAGTTATAGAGTGAAATCCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGTTTTAAATTTGAGGCCAACCTCAGTTATAGAGTGAAATCCTGG  650

seq1  TTCAAGAGAAACCAAAGCTGAAATGCTTAAGAAGTCGCCCAGAGGTCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAGAAACCAAAGCTGAAATGCTTAAGAAGTCGCCCAGAGGTCTTC  700

seq1  TCCAAGTCAAACTTTGAGTCTTATTACAGAGGTGTGCTCAACACAACCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTCAAACTTTGAGTCTTATTACAGAGGTGTGCTCAACACAACCTC  750

seq1  TGGAAGTCTGCAGACAGGTGTTGGTCAGGTGTATTTGGAGTGTCCACTGA  800
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGAAGTCTGCAGACAGGTGTTGGTCA-GTGTATTTGGAGTGTCCACTGA  799

seq1  ATTAACCTCCCCAAAAGTCCTGGACACAGTTTGGTTTTCAGTCA-TCTCA  849
      |||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  ATTAACCTCCCCAAAAGTCCTGGACACAGTTTGG-TTTCAGTCATTCTCA  848

seq1  ACCTAATGGATATTCATCTTTGTACA-TATTCTGATTTTAAGAAGGCAGG  898
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  ACCTAATGGATATTCATCTTTGTACATTATTCTGATTTT-AGAAGGCAGG  897

seq1  AGCACTTATTAATGATGTGA-CTTGA  923
      ||||||| |  ||||||||| |||||
seq2  AGCACTT-TATATGATGTGACCTTGA  922


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