BAC Information

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BAC

Clone NameB6Ng01-182O24
Chromosome5 (Build37)
Map Location 35,144,969 - 35,282,778
singlet/doubletdoublet
Overlap geneHdh, A930005I04Rik
Upstream geneWhsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28, EG433874, A830049F12Rik, LOC100040061, Rnf4, BC037112, LOC100040480, Tnip2, Sh3bp2, Add1, 0610009O03Rik, Nol14, Gprk2l
Downstream geneRgs12, Hgfac, Dok7, Lrpap1, Adra2c, Hmx1, Cpz, Plk-ps1, 2310079F23Rik, Acox3, Htra3, Sh3tc1, Ablim2, Afap1, LOC100040209
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182O24.bB6Ng01-182O24.g
ACCGA008694GA008695
length292781
definitionB6Ng01-182O24.b B6Ng01-182O24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,144,969 - 35,145,260)(35,281,998 - 35,282,778)
sequence
aatctttgttttgtagtacagaactggaagatcctgtccacaccaagagg
caggatccccaaggagttaggtgtgtggtgtaaagagggacgcctgtaag
gaggctgcagcggacagagtgtctggagagatggggttctaggtcttatg
tagtagtggagtctccacagaatggacccacagtaagaggacacttgcac
acaggctgccatagtactgggggtgatatcctgagagatggaactaggat
gaaaattgccagagtctcaccctggtatggactggggggggg
gaattcagtttcaaaacatctctcttctgggctccataggctccgatata
tgcatgctatacacaaactcacatgtacataaataagaaaaaataaacat
atcgttttaatttatttatttttttaagtctgaaaggaaaacaagttgga
accaaatactgttcaccaccagaagcacggttcaagacagctcaaagaaa
ttgacacattacacctaaataaagaagactgctaacaacagtgcccaagc
agaatggacaagcttacccccaaaataactttaactgttcagagacatac
atgtctatccttgccttatgaaaactcagaaagtcagaaattactttctg
ggaaggataaatgcatgtgtcctaagttcttccccacatgtcttctccac
atctcaatttaaacgatactaaatttaaagcctcccaaaccaggatgaag
cctatcccccagggacatattcccactccctcctaatggtactgtcctta
gagccttccaagacaagatccaactaataagggaagatgctccaagcaac
agtaaggacattcaatgcaacctcaagctcagtgcaggagctacccatca
gtggactatatgagcttggtgtatggatgtcatatctggggataagggga
gaccccaagaacattctgtattaccttggttactaaacctagagattcct
agggatgacatgaagatacatgtagtagaaattaaagatttaagacagcc
tagaggttaaaactggatgtggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_35144969_35145260
seq2: B6Ng01-182O24.b_50_341

seq1  AATCTTTGTTTTGTAGTACAGAACTGGAAGATCCTGTCCACACCAAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTGTTTTGTAGTACAGAACTGGAAGATCCTGTCCACACCAAGAGG  50

seq1  CAGGATCCCCAAGGAGTTAGGTGTGTGGTGTAAAGAGGGACGCCTGTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCCCCAAGGAGTTAGGTGTGTGGTGTAAAGAGGGACGCCTGTAAG  100

seq1  GAGGCTGCAGCGGACAGAGTGTCTGGAGAGATGGGGTTCTAGGTCTTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGCAGCGGACAGAGTGTCTGGAGAGATGGGGTTCTAGGTCTTATG  150

seq1  TAGTAGTGGAGTCTCCACAGAATGGACCCACAGTAAGAGGACACTTGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTGGAGTCTCCACAGAATGGACCCACAGTAAGAGGACACTTGCAC  200

seq1  ACAGGCTGCCATAGTACTGGGGGTGATATCCTGAGAGATGGAACTAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTGCCATAGTACTGGGGGTGATATCCTGAGAGATGGAACTAGGAT  250

seq1  GAAAATTGCCAGAGTCTCACCCTGGTATGGACTGGGGGGGGG  292
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGCCAGAGTCTCACCCTGGTATGGACTGGGGGGGGG  292

seq1: chr5_35281998_35282778
seq2: B6Ng01-182O24.g_64_844 (reverse)

seq1  CCCCCCCCCCCACATCCAGTTTTAACCTCTAGGCTGTCTTAAATCTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCACATCCAGTTTTAACCTCTAGGCTGTCTTAAATCTTTAA  50

seq1  TTTCTACTACATGTATCTTCATGTCATCCCTAGGAATCTCTAGGTTTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTACATGTATCTTCATGTCATCCCTAGGAATCTCTAGGTTTAGT  100

seq1  AACCAAGGTAATACAGAATGTTCTTGGGGTCTCCCCTTATCCCCAGATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGGTAATACAGAATGTTCTTGGGGTCTCCCCTTATCCCCAGATAT  150

seq1  GACATCCATACACCAAGCTCATATAGTCCACTGATGGGTAGCTCCTGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCATACACCAAGCTCATATAGTCCACTGATGGGTAGCTCCTGCAC  200

seq1  TGAGCTTGAGGTTGCATTGAATGTCCTTACTGTTGCTTGGAGCATCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTGAGGTTGCATTGAATGTCCTTACTGTTGCTTGGAGCATCTTCC  250

seq1  CTTATTAGTTGGATCTTGTCTTGGAAGGCTCTAAGGACAGTACCATTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAGTTGGATCTTGTCTTGGAAGGCTCTAAGGACAGTACCATTAGG  300

seq1  AGGGAGTGGGAATATGTCCCTGGGGGATAGGCTTCATCCTGGTTTGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTGGGAATATGTCCCTGGGGGATAGGCTTCATCCTGGTTTGGGAG  350

seq1  GCTTTAAATTTAGTATCGTTTAAATTGAGATGTGGAGAAGACATGTGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAATTTAGTATCGTTTAAATTGAGATGTGGAGAAGACATGTGGGG  400

seq1  AAGAACTTAGGACACATGCATTTATCCTTCCCAGAAAGTAATTTCTGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTTAGGACACATGCATTTATCCTTCCCAGAAAGTAATTTCTGACT  450

seq1  TTCTGAGTTTTCATAAGGCAAGGATAGACATGTATGTCTCTGAACAGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTTTTCATAAGGCAAGGATAGACATGTATGTCTCTGAACAGTTA  500

seq1  AAGTTATTTTGGGGGTAAGCTTGTCCATTCTGCTTGGGCACTGTTGTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATTTTGGGGGTAAGCTTGTCCATTCTGCTTGGGCACTGTTGTTAG  550

seq1  CAGTCTTCTTTATTTAGGTGTAATGTGTCAATTTCTTTGAGCTGTCTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTCTTTATTTAGGTGTAATGTGTCAATTTCTTTGAGCTGTCTTGA  600

seq1  ACCGTGCTTCTGGTGGTGAACAGTATTTGGTTCCAACTTGTTTTCCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGCTTCTGGTGGTGAACAGTATTTGGTTCCAACTTGTTTTCCTTTC  650

seq1  AGACTTAAAAAAATAAATAAATTAAAACGATATGTTTATTTTTTCTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAAAAAAATAAATAAATTAAAACGATATGTTTATTTTTTCTTATT  700

seq1  TATGTACATGTGAGTTTGTGTATAGCATGCATATATCGGAGCCTATGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACATGTGAGTTTGTGTATAGCATGCATATATCGGAGCCTATGGAG  750

seq1  CCCAGAAGAGAGATGTTTTGAAACTGAATTC  781
      |||||||||||||||||||||||||||||||
seq2  CCCAGAAGAGAGATGTTTTGAAACTGAATTC  781