BAC Information

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BAC

Clone NameB6Ng01-183G05
Chromosome5 (Build37)
Map Location 15,208,252 - 15,209,369
singlet/doubletsinglet
Overlap geneSpeer7-ps1
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183G05.bB6Ng01-183G05.g
ACCGA009026GA009027
length9021,122
definitionB6Ng01-183G05.b B6Ng01-183G05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttttttttttaattaggtattttccttgtttacattttcaatg
ctatcccaaaggtcccccatacccacccacccaatcccctacccacccac
tccccctttttggccctggtgttccctgtactggggcatataaagttagc
aagtccaatgggcttctctttgcagtgatggccgactaggccatcttttg
atacatatgcagctagagacaagagctccggggtactggttagttcataa
tgttgttccacctacagggttgcagatccctttaactccttgggtaattt
ctctagctcctccattgggggccttgtgacccatccaatagctgactgtg
atcatccacttctgtgtttgctaggccccggcatactctcacaagagaga
gctatatctgggtcctttcagcaaaatcttgctagtgtatgcaatggtgt
cagcatttggaagctgattatgggatggatccctgcatatggcaatcact
agatggtacatcgttttgtcacagctccaaattttgtctctgtaactcct
tctatgggtgatttgttcccatttctaagaaagggtaaagtgtccacact
ttggtcttccttcttcttgaatttcatgcctttggcaagttatatcttat
atcttgggtatcctaagtttctgggctaatatcgacttatcagtgagcac
atattgtgcgagttcctttgtgattgggttacttcactaaggatgatacc
ctccaggtccatccatttgcctaggaatttgataaattcatttttttaat
agctgactagtactccattgtgtaaatgtaccacattttatgtatccatt
ttttctgttgaggggcatgtggggttcttttccagctttctgtctaatta
ta

gaattccaggacagccaggattacaccaaaaagcactattttggtgggaa
aaattaatagggaaagttattgagctctacaaaacacactttaaaacccc
gggtgtaaaacagacactacttttgaatggtaagataaaaacaaggcaat
ctttccaatttgcagaatgttttctaatgaagtcttttcccagtaaagga
acctctgaactctagaagcagatctgggccattacagttcacaggctcca
cgagtcagtagttgttggagcactgaggataaaacactgagaaagtattt
atcatacacaagtttatttaagagacagggtgtttttccccgtcatagag
cttaaaagtggatttttcccttttgttgctgaacggatagatgaaactat
tcatgaaaatcataacccctcctggcgtcggggaactgatatcacctaaa
acgctctcgcaaagtctaatcggaaggctaactataatttcagtagaggt
ccaaattctctcttgtttttgataaagcatttttttcacctcttcttgaa
tgaggatgaacctatttgcttctttttattaggacaccaaaagcacttct
gttacagttgccttacaactattctgccacgaggtggcgataaaacactt
tgaaaattttttttaaaaagtcaactactgtctgttttgcctcaaaactg
atttttttttttcttgtaatacaaaatgtatatacagcatgcttttgttc
cacactgtgactcctattcagatctaataactgtggggatttttctgaaa
cctaaatcatgagccctgaaatcactcagagacaagggatgtagcataga
tactgctgtgatcagatgtgactggtccatgcctccactgtgtcaaagtg
tttcacctgtgtgtgctggattgctgacagtcccatcagcacctcgcagc
agcgaattttaggaaaataagtagctttcttggtaaaatgaagaacaatt
ttatataggttgttggatcattctgtggagcctgagtttcacaagaggca
gtaacaaagctgggatccatataggcttcatgtgcttatcaaaaccactc
atcaccagcaagtattaccctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_15208252_15209369
seq2: B6Ng01-183G05.g_70_1188

seq1  TTCCAGGACAGCCAGGATTACACCGAAAAACACTGTTTTGGTGGGAAAAT  50
      |||||||||||||||||||||||| |||| |||| |||||||||||||| 
seq2  TTCCAGGACAGCCAGGATTACACCAAAAAGCACTATTTTGGTGGGAAAAA  50

seq1  TTAATAGGAAAAGTTATTGAGCTCTACAAAACACACTTTAAAACCCCGGG  100
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGGGAAAGTTATTGAGCTCTACAAAACACACTTTAAAACCCCGGG  100

seq1  TGTAAAACAGACACTACTTTTGAATGGTAAGATAAAAACAAGGCAATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAACAGACACTACTTTTGAATGGTAAGATAAAAACAAGGCAATCTT  150

seq1  TCCAATTTGCAGAATGTTTTCTAATGAAGTCTTTTCCCAGTAAAGGAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTTGCAGAATGTTTTCTAATGAAGTCTTTTCCCAGTAAAGGAACC  200

seq1  TCTGAACTCTAGAAGCAGATCTGGGCCATTACAGTTCACAGTCT-CACGA  249
      ||||||||||||||||||||||||||||||||||||||||| || |||||
seq2  TCTGAACTCTAGAAGCAGATCTGGGCCATTACAGTTCACAGGCTCCACGA  250

seq1  GTCCGTAGTTGTTGGAGCACTGAGGATAAAACACTGAGAAAGTATTTATC  299
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTAGTTGTTGGAGCACTGAGGATAAAACACTGAGAAAGTATTTATC  300

seq1  ACACACAAGTTTATTTAAGAGACAGGGTGTTTTTCCCCCTCATAGAGCTT  349
      | |||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATACACAAGTTTATTTAAGAGACAGGGTGTTTTTCCCCGTCATAGAGCTT  350

seq1  AAAAGTGGATTTTTCCCTTTTGTTGCTGAACGGATAGATGAAACAATTCA  399
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAAAGTGGATTTTTCCCTTTTGTTGCTGAACGGATAGATGAAACTATTCA  400

seq1  TGAAAATCATAACCCCTCCTGGCGTCGGGGAACTGATATCAACTAAAATG  449
      ||||||||||||||||||||||||||||||||||||||||| |||||| |
seq2  TGAAAATCATAACCCCTCCTGGCGTCGGGGAACTGATATCACCTAAAACG  450

seq1  CTCTCGCAAAGTCTAATCGGAAGGCTAACTATAATTTCAGTAGAGGTCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGCAAAGTCTAATCGGAAGGCTAACTATAATTTCAGTAGAGGTCCA  500

seq1  AATTCTCTCTTGTTTTTGATAAAACTTTTTTTTCACCTCTTCTTGAATGA  549
      ||||||||||||||||||||||| | ||||||||||||||||||||||||
seq2  AATTCTCTCTTGTTTTTGATAAAGCATTTTTTTCACCTCTTCTTGAATGA  550

seq1  GGACGAACCTATTTGCTTCTTTTTATTAGGACACCTAATAAAAAGCACTT  599
      ||| |||||||||||||||||||||||||||||||               
seq2  GGATGAACCTATTTGCTTCTTTTTATTAGGACACC---------------  585

seq1  TATTAAAAGCACTTCTGTTACAGTTGCCTTACAGCTATTCTGCCACGAGG  649
          ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ----AAAAGCACTTCTGTTACAGTTGCCTTACAACTATTCTGCCACGAGG  631

seq1  TGGCGATAAAACACTTTGAAAGTTTTTTTTAAAAAGTCAACTACTCGCTG  699
      ||||||||||||||||||||| |||||||||||||||||||||||  |||
seq2  TGGCGATAAAACACTTTGAAAATTTTTTTTAAAAAGTCAACTACTGTCTG  681

seq1  TTTTGCCTCAAAACTGATTTTTTTTGTTGTTGTAATACAAAATGTATATA  749
      ||||||||||||||||||||||||| || |||||||||||||||||||||
seq2  TTTTGCCTCAAAACTGATTTTTTTTTTTCTTGTAATACAAAATGTATATA  731

seq1  GAGCATGCTTTTGTTCCACACTGTGACTCCTATTCAGATCTAATAACTGT  799
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGCTTTTGTTCCACACTGTGACTCCTATTCAGATCTAATAACTGT  781

seq1  GGGGATTTTTCTGAAACCTAAATCATGAGCCCTGAAATCACCCAGAGACA  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGGGATTTTTCTGAAACCTAAATCATGAGCCCTGAAATCACTCAGAGACA  831

seq1  AGGGATGTAGCAATAGAGACTGCTGTGATCAGATGTGACTGGTCCATGCC  899
      ||||||||||| ||||| ||||||||||||||||||||||||||||||||
seq2  AGGGATGTAGC-ATAGATACTGCTGTGATCAGATGTGACTGGTCCATGCC  880

seq1  TTCCACTGTGTCAAAGTGTTTCACCTGTGTTTGCTGGA-TGCTGACAGTC  948
       ||||||||||||||||||||||||||||| ||||||| |||||||||||
seq2  -TCCACTGTGTCAAAGTGTTTCACCTGTGTGTGCTGGATTGCTGACAGTC  929

seq1  CCATCAGCACCTCGCAGCAGCGA--TTTAGGAAAATAAGGTAGCTT--CT  994
      |||||||||||||||||||||||  ||||||||||||| |||||||   |
seq2  CCATCAGCACCTCGCAGCAGCGAATTTTAGGAAAATAA-GTAGCTTTCTT  978

seq1  GGTAAAATG-AGGACA--TTTATATAGGT--GTGGATCA-TCTGT-GAG-  1036
      ||||||||| || |||  |||||||||||   ||||||| ||||| ||| 
seq2  GGTAAAATGAAGAACAATTTTATATAGGTTGTTGGATCATTCTGTGGAGC  1028

seq1  CTGAG-TTCAC-AGAGGCAGTAGCAAAGCT-GGAT-CATATAGGGCTCAT  1082
      ||||| ||||| |||||||||| ||||||| |||| ||||||||  ||||
seq2  CTGAGTTTCACAAGAGGCAGTAACAAAGCTGGGATCCATATAGGCTTCAT  1078

seq1  G-GC-TGTC-AGAGCACTCATCACCAGC-AGTA-TACCCTT  1118
      | || | || | | |||||||||||||| |||| |||||||
seq2  GTGCTTATCAAAACCACTCATCACCAGCAAGTATTACCCTT  1119


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