BAC Information

Click to search

BAC

Clone NameB6Ng01-183O23
Chromosome5 (Build37)
Map Location 16,478,013 - 16,479,116
singlet/doubletsinglet
Overlap genenone
Upstream geneCacna2d1, LOC668121, Hgf, EG668131
Downstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36, Gnat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183O23.bB6Ng01-183O23.g
ACCGA009437GA009438
length1,105699
definitionB6Ng01-183O23.b B6Ng01-183O23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattaaattttattgagcttgtgtctccacaactatgaacccaaa
caagcttctttactttacaacagagtctgtctcagacatttataacccta
aacagaaagctgaacaacatataggaggttagtctaaccatgtaattttt
attttactgcatggagacttgtgtgttgaaatgggtccctccagttctct
ctggatgtagccttaaaactcatgtcttgatttttctctaacatataacc
ttatttggagataagatttcatcagtagtaattcaattaaagtgaagaat
ttgggtgggctctcatactgaataacaccggtgtttctaaatatagatac
agatacacagagggagcattaagagaagataaagccggaaattaggatgg
tgcctttcttagcccagacactccagatgtccagaaagccaacagaagtt
agggaaagcaggggacaggctctgtctcatagctcttcaacaactcttga
tttttcccttataactgtaaaacaataattacacactgtgaaaatactca
gttgaagtgtatttttaaaaaattgtagcaaactaagacaaattttaatt
tggtctcaaaatacataatataagaaataaggtgagtatttgggtggttg
acaacagtgaaactgacaattattacactgacattcaacagaagcaagaa
tcataacttttttataagactctataaatgtgtgggtggtagggtttaat
atgtcttcaaggcatggagattgacagttaacaggcagtactatgaacta
tcttgtctaaagaatcatagacaactttatattagaggaattatacatcc
aattttctctttaaaataaacgtaaaaggctggatagatggctctgtgat
gaagaacatttgttgctctggcaggaaagccagtttgaatttcccagcac
ccacatggcccctttacaatattatttagcctccatgtcaggaatcattt
atatgggaaatgatgctcacatgtatactcagcacttgcagtgacaccag
acctgtactgtcattccaagtgggaaatctgagacatggaaaccaatatg
gagct

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacacgcctccattgttggtg
ggagtgcaggcttgtacaaccactcttgaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatctagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
ctaggatacccaagatataagatacaatttcctaaagcacatgaaactca
aggaaacatgaagactttatattgtggaccttttgcctcctcccttaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_16478013_16479116
seq2: B6Ng01-183O23.b_46_1150

seq1  GAATTCATTAAATTTTATTGAGCTTGTGTCTCCACAACTATGAACCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAATTTTATTGAGCTTGTGTCTCCACAACTATGAACCCAAA  50

seq1  CAAGCTTCTTTACTTTACAACAGAGTCTGTCTCAGACATTTATAACCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTCTTTACTTTACAACAGAGTCTGTCTCAGACATTTATAACCCTA  100

seq1  AACAGAAAGCTGAACAACATATAGGAGGTTAGTCTAACCATGTAATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAAGCTGAACAACATATAGGAGGTTAGTCTAACCATGTAATTTTT  150

seq1  ATTTTACTGCATGGAGACTTGTGTGTTGAAATGGGTCCCTCCAGTTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTGCATGGAGACTTGTGTGTTGAAATGGGTCCCTCCAGTTCTCT  200

seq1  CTGGATGTAGCCTTAAAACTCATGTCTTGATTTTTCTCTAACATATAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGTAGCCTTAAAACTCATGTCTTGATTTTTCTCTAACATATAACC  250

seq1  TTATTTGGAGATAAGATTTCATCAGTAGTAATTCAATTAAAGTGAAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGGAGATAAGATTTCATCAGTAGTAATTCAATTAAAGTGAAGAAT  300

seq1  TTGGGTGGGCTCTCATACTGAATAACACCGGTGTTTCTAAATATAGATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGGGCTCTCATACTGAATAACACCGGTGTTTCTAAATATAGATAC  350

seq1  AGATACACAGAGGGAGCATTAAGAGAAGATAAAGCCGGAAATTAGGATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACACAGAGGGAGCATTAAGAGAAGATAAAGCCGGAAATTAGGATGG  400

seq1  TGCCTTTCTTAGCCCAGACACTCCAGATGTCCAGAAAGCCAACAGAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTCTTAGCCCAGACACTCCAGATGTCCAGAAAGCCAACAGAAGTT  450

seq1  AGGGAAAGCAGGGGACAGGCTCTGTCTCATAGCTCTTCAACAACTCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGCAGGGGACAGGCTCTGTCTCATAGCTCTTCAACAACTCTTGA  500

seq1  TTTTTCCCTTATAACTGTAAAACAATAATTACACACTGTGAAAATACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCTTATAACTGTAAAACAATAATTACACACTGTGAAAATACTCA  550

seq1  GTTGAAGTGTATTTTTAAAAAATTGTAGCAAACTAAGACAAATTTTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGTGTATTTTTAAAAAATTGTAGCAAACTAAGACAAATTTTAATT  600

seq1  TGGTCTCAAAATACATAATATAAGAAATAAGGTGAGTATTTGGGTGGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCAAAATACATAATATAAGAAATAAGGTGAGTATTTGGGTGGTTG  650

seq1  ACAACAGTGAAACTGACAATTATTACACTGACATTCAACAGAAGCAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGTGAAACTGACAATTATTACACTGACATTCAACAGAAGCAAGAA  700

seq1  TCATAACTTTTTTATAAGACTCTATAAATGTGTGGGTGGTAGGGTTTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACTTTTTTATAAGACTCTATAAATGTGTGGGTGGTAGGGTTTAAT  750

seq1  ATGTCTTCAAGGCATGGAGATTGACAGTTAACAGGCAGTACTATGAACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTCAAGGCATGGAGATTGACAGTTAACAGGCAGTACTATGAACTA  800

seq1  TCTTGTCTAAAGAATCATAGACAACTTTATATTAGAGGAATTATACATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCTAAAGAATCATAGACAACTTTATATTAGAGGAATTATACATCC  850

seq1  AATTTTCTCTTTAAAATAAACGTAAAAGGCTGGATAGATGGCTCTGTGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTCTTTAAAATAAACGTAAAAGGCTGGATAGATGGCTCTGTGAT  900

seq1  GAAGAACATTTGTTGCTCTGGCAGGAAAGCCAGTTTGAA-TTCCCAGCAC  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAAGAACATTTGTTGCTCTGGCAGGAAAGCCAGTTTGAATTTCCCAGCAC  950

seq1  CCACATGGCCCC-TTACAATATTATTTAGCTCCAATGTCAGGGAATCATT  998
      |||||||||||| |||||||||||||||||  | |||||| |||||||||
seq2  CCACATGGCCCCTTTACAATATTATTTAGCCTCCATGTCA-GGAATCATT  999

seq1  TATAT-GGAAATGATGCTCACATGTATACTCAAGCACTTTGCAGTGACA-  1046
      ||||| ||||||||||||||||||||||||| ||||| ||||||||||| 
seq2  TATATGGGAAATGATGCTCACATGTATACTC-AGCAC-TTGCAGTGACAC  1047

seq1  CAGACCTGTACTGTCATTCCAAGGTGGAAATCTGAGACATGGAAACCAAT  1096
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  CAGACCTGTACTGTCATTCCAAGTGGGAAATCTGAGACATGGAAACCAAT  1097

seq1  ATGAAGCT  1104
      ||| ||||
seq2  ATGGAGCT  1105


| Home | SequenceCutter | Blast | Download |