BAC Information

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BAC

Clone NameB6Ng01-184F11
Chromosome5 (Build37)
Map Location 13,398,291 - 13,575,425
singlet/doubletdoublet
Overlap geneSema3a
Upstream geneSema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
Downstream geneLOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957, Pclo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184F11.bB6Ng01-184F11.g
ACCGA009743GA009744
length1,0651,088
definitionB6Ng01-184F11.b B6Ng01-184F11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,574,367 - 13,575,425)(13,398,291 - 13,399,375)
sequence
gaattcctcatgtgactaaagaaataactaaccatgtgagttcgtattaa
agaaattatatagttgaggctcaagagctagaaaacttaacacaccaatg
caatgaaaataggaagtctaagttcttttaaaatatagttgattaaaatt
ttatttcctattcattgattatgcaaaagcaaacatctataaagcagata
gaaatgggtcttctcatatgtaaattataaaaccagagacaaactcgaac
acatgacagattctatagggtcatactatggttcaaaattctagattaag
attatagtatctcttaattaatataaatgcctttgttatttataccaata
aattaataacggttttgaatatgtactgcctgcaactgaattttagtgca
cattgtcttccaatgacatccatttaaataagctgcacattttctgagaa
acaactggtgacaaatatgagttccacgtaaagcagacgccgcttactaa
gcagttttcttttttttttttttttccattttttattaggtatttagctc
atttacatttccaatgctataccaaaagtcccccttacccacccaccccc
actcccctacccacccactcccctttttggccctggcgttcccctgtacc
ggggcacacaaagtctgcgtgtccaatgggcctctctttccagtgatggc
cgactaggccatcttttgatacatatgcacctagagtcaagagctccggg
gtactggttagttcataatgttgatccacctatagggttgcagatccctt
taactccttgggtactttctctagctcctccattgggagccctgtgatcc
atccattagctgactgtgagcatcccacttctgtgtttgctaggccccgg
cattagttctcaacaagaagacagctacatctggggtcctttcagaaaat
tcttactaagcagttttctattgacatggtttcaattggcaaattaagtt
ggtgttcaagccaaacattaaaacttagcatcttttcaagattttctatg
acctcaatttactat

gaattctcttccggatttaaagtgtttagaggcagtggtagaaaacagaa
tagagagaagattacaggaaatgtagagggtgttctcttatagcttttat
acaactcttacccaaatcccataataccactagatgtcagggatcttgag
agaaacgtaaaagaagaaatttagaccccacagacagcatgcctatatgg
cagagaagtaatgaggtccaactcgcctcggaatacatgattgtgcccca
cagagaactgagtcatccctcaccagttcatgaaaacataagaacaccct
tttcttttaattctggtccttgacactcagcagggacttttgtgaacttt
gtcatcttcctctgcccttgaagccagcacgagggaagtggatctaatta
ataagaggtgctgccttgcagagtcagccactgctttccagaagctgcag
aaccacccccggcacttttaaatttggagtatcctttcgcgaatcccctg
ttgtaatttataattctcagtggacctatatttgtcttgaactgatcgtt
tatatgggctttccaaggaatttcttcactacacttgttgtagagccggg
agaagggggtggctgaacccaaggggggttgcgtggaggcgggaataatc
tctgagggggctttaaaacctaccgtggttaaagttacactgatgcgaga
atacacacacacacacacacacacacacacacacacacgcacacgcacgc
gcgcgcgcgcgcgcacacacacacacacacacacacacacacacacactg
cacaagtttcagcaaaggcagtataatgagcatgggactgtaaattctgt
aggtagccaaattcattttaaaaaaaaaaaatcgcaattgctccccccaa
atggctataaaacacgcttgcctcggggaggtaaattatagccccatgcc
tctccaggcacgctggagggtcctgctccggctctaatctctgcgagatg
ttttttgcatgtgtgtgtgacagaggaaaggggaggtgggttgagctcgc
ttcctctccctattggtcagcctcgtctagtggagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_13574367_13575425
seq2: B6Ng01-184F11.b_43_1107 (reverse)

seq1  ATAGTAAATTTGAGTCATAGAAAATCTTGAAAAGATGCTAAGTTTTTAAT  50
      ||||||||||   ||||||||||||||||||||||||||||| |||||||
seq2  ATAGTAAATTGAGGTCATAGAAAATCTTGAAAAGATGCTAAG-TTTTAAT  49

seq1  GTTTTGCTTGAACACCAACTAAATTTG-CAATTGAAACCAATGTC-ATAG  98
      |||| ||||||||||||||| |||||| ||||||||||| ||||| ||||
seq2  GTTTGGCTTGAACACCAACTTAATTTGCCAATTGAAACC-ATGTCAATAG  98

seq1  AAAACTGCTTAGTAAGATTTTACTGAAAGGA-CCCAGATGTAGCTGTC-T  146
      ||||||||||||||||| ||| ||||||||| |||||||||||||||| |
seq2  AAAACTGCTTAGTAAGAATTTTCTGAAAGGACCCCAGATGTAGCTGTCTT  148

seq1  CTTG-TGAG-ACT-ATGCCGGGGCCTAGCAAACACAGAAGT-GGATGCTC  192
      |||| |||| ||| ||||||||||||||||||||||||||| ||||||||
seq2  CTTGTTGAGAACTAATGCCGGGGCCTAGCAAACACAGAAGTGGGATGCTC  198

seq1  ACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGA  248

seq1  AAGTACCCAAGGAGTTAAAGGGATCTGCAACCCTATAGGTGGATCAACAT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACCCAAGGAGTTAAAGGGATCTGCAACCCTATAGGTGGATCAACAT  298

seq1  TATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGGTGCATATGTATC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGGTGCATATGTATC  348

seq1  AAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACG  398

seq1  CAGACTTTGTGTGCCCCGGTACAGGGGAACGCCAGGGCCAAAAAGGGGAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTTGTGTGCCCCGGTACAGGGGAACGCCAGGGCCAAAAAGGGGAG  448

seq1  TGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTAAGGGGGACTTTTGGTATA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTAAGGGGGACTTTTGGTATA  498

seq1  GCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAAAAAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGGAAAAAAAA  548

seq1  AAAAAAAAGAAAACTGCTTAGTAAGCGGCGTCTGCTTTACGTGGAACTCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGAAAACTGCTTAGTAAGCGGCGTCTGCTTTACGTGGAACTCA  598

seq1  TATTTGTCACCAGTTGTTTCTCAGAAAATGTGCAGCTTATTTAAATGGAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTCACCAGTTGTTTCTCAGAAAATGTGCAGCTTATTTAAATGGAT  648

seq1  GTCATTGGAAGACAATGTGCACTAAAATTCAGTTGCAGGCAGTACATATT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGGAAGACAATGTGCACTAAAATTCAGTTGCAGGCAGTACATATT  698

seq1  CAAAACCGTTATTAATTTATTGGTATAAATAACAAAGGCATTTATATTAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCGTTATTAATTTATTGGTATAAATAACAAAGGCATTTATATTAA  748

seq1  TTAAGAGATACTATAATCTTAATCTAGAATTTTGAACCATAGTATGACCC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGATACTATAATCTTAATCTAGAATTTTGAACCATAGTATGACCC  798

seq1  TATAGAATCTGTCATGTGTTCGAGTTTGTCTCTGGTTTTATAATTTACAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAATCTGTCATGTGTTCGAGTTTGTCTCTGGTTTTATAATTTACAT  848

seq1  ATGAGAAGACCCATTTCTATCTGCTTTATAGATGTTTGCTTTTGCATAAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAGACCCATTTCTATCTGCTTTATAGATGTTTGCTTTTGCATAAT  898

seq1  CAATGAATAGGAAATAAAATTTTAATCAACTATATTTTAAAAGAACTTAG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAATAGGAAATAAAATTTTAATCAACTATATTTTAAAAGAACTTAG  948

seq1  ACTTCCTATTTTCATTGCATTGGTGTGTTAAGTTTTCTAGCTCTTGAGCC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTATTTTCATTGCATTGGTGTGTTAAGTTTTCTAGCTCTTGAGCC  998

seq1  TCAACTATATAATTTCTTTAATACGAACTCACATGGTTAGTTATTTCTTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTATATAATTTCTTTAATACGAACTCACATGGTTAGTTATTTCTTT  1048

seq1  AGTCACATGAGGAATTC  1059
      |||||||||||||||||
seq2  AGTCACATGAGGAATTC  1065


seq1: chr5_13398291_13399375
seq2: B6Ng01-184F11.g_67_1154

seq1  GAATTCTCTTCCGGATTTAAAGTGTTTAGAGGCAGTGGTAGAAAACAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCCGGATTTAAAGTGTTTAGAGGCAGTGGTAGAAAACAGAA  50

seq1  TAGAGAGAAGATTACAGGAAATGTAGAGGGTGTTCTCTTATAGCTTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGAAGATTACAGGAAATGTAGAGGGTGTTCTCTTATAGCTTTTAT  100

seq1  ACAACTCTTACCCAAATCCCATAATACCACTAGATGTCAGGGATCTTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCTTACCCAAATCCCATAATACCACTAGATGTCAGGGATCTTGAG  150

seq1  AGAAACGTAAAAGAAGAAATTTAGACCCCACAGACAGCATGCCTATATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACGTAAAAGAAGAAATTTAGACCCCACAGACAGCATGCCTATATGG  200

seq1  CAGAGAAGTAATGAGGTCCAACTCGCCTCGGAATACATGATTGTGCCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAGTAATGAGGTCCAACTCGCCTCGGAATACATGATTGTGCCCCA  250

seq1  CAGAGAACTGAGTCATCCCTCACCAGTTCATGAAAACATAAGAACACCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAACTGAGTCATCCCTCACCAGTTCATGAAAACATAAGAACACCCT  300

seq1  TTTCTTTTAATTCTGGTCCTTGACACTCAGCAGGGACTTTTGTGAACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTAATTCTGGTCCTTGACACTCAGCAGGGACTTTTGTGAACTTT  350

seq1  GTCATCTTCCTCTGCCCTTGAAGCCAGCACGAGGGAAGTGGATCTAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTTCCTCTGCCCTTGAAGCCAGCACGAGGGAAGTGGATCTAATTA  400

seq1  ATAAGAGGTGCTGCCTTGCAGAGTCAGCCACTGCTTTCCAGAAGCTGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGGTGCTGCCTTGCAGAGTCAGCCACTGCTTTCCAGAAGCTGCAG  450

seq1  AACCACCCCCGGCACTTTTAAATTTGGAGTATCCTTTCGCGAATCCCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCCCCGGCACTTTTAAATTTGGAGTATCCTTTCGCGAATCCCCTG  500

seq1  TTGTAATTTATAATTCTCAGTGGACCTATATTTGTCTTGAACTGATCGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATTTATAATTCTCAGTGGACCTATATTTGTCTTGAACTGATCGTT  550

seq1  TATATGGGCTTTCCAAGGAATTTCTTCACTACACTTGTTGTAGAGCCGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGGCTTTCCAAGGAATTTCTTCACTACACTTGTTGTAGAGCCGGG  600

seq1  AGAAGGGGGTGGCTGAACCCAAGGGGGGTTGCGTGGAGGCGGGAATAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGGGTGGCTGAACCCAAGGGGGGTTGCGTGGAGGCGGGAATAATC  650

seq1  TCTGAGGGGGCTTTAAAACCTACCGTGGTTAAAGTTACACTGATGCGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGGGGCTTTAAAACCTACCGTGGTTAAAGTTACACTGATGCGAGA  700

seq1  ATACACACACACACACACACACACACACACACACACACGCACACGCACGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACACACACACACACACACACACACACACACGCACACGCACGC  750

seq1  GCGCGCGCGCGCGCACACACACACACACACACACACACACACACACACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGCGCGCGCGCACACACACACACACACACACACACACACACACACTG  800

seq1  CACAAG-TTCAGC-AAGGCAGTATAATGAGCAT-GGACTGTAAATTCTGT  847
      |||||| |||||| ||||||||||||||||||| ||||||||||||||||
seq2  CACAAGTTTCAGCAAAGGCAGTATAATGAGCATGGGACTGTAAATTCTGT  850

seq1  AGGTAGCCAAATTCAATTTTAAAAAAAAAAAATCGCAATTGCTCCCCCCA  897
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGGTAGCCAAATTC-ATTTTAAAAAAAAAAAATCGCAATTGCTCCCCCCA  899

seq1  AATGGCTATAAAACAACGCTTGCCTC-GGGAGGTAAATTTATAGCCCCAT  946
      |||||||||||||| ||||||||||| |||||||||| ||||||||||||
seq2  AATGGCTATAAAAC-ACGCTTGCCTCGGGGAGGTAAA-TTATAGCCCCAT  947

seq1  GCCTCTCCCAGGCACGCTGGAGGGTTCTGCTCCCGGCTCTAATCTCTGCG  996
      |||||| |||||||||||||||||| ||||| ||||||||||||||||||
seq2  GCCTCT-CCAGGCACGCTGGAGGGTCCTGCT-CCGGCTCTAATCTCTGCG  995

seq1  AGATGTTTTTTGCATGTGTTGTGTGACAAGAGGGAAGGGGA-GTGGGTTG  1045
      |||||||||||||||||| |||||||| ||||| ||||||| ||||||||
seq2  AGATGTTTTTTGCATGTG-TGTGTGAC-AGAGGAAAGGGGAGGTGGGTTG  1043

seq1  AGCTCGC-TCCTCTCCC-ATT-GTCAG-CGCGTCTAGT-GAGTGT  1085
      ||||||| ||||||||| ||| ||||| | |||||||| ||||||
seq2  AGCTCGCTTCCTCTCCCTATTGGTCAGCCTCGTCTAGTGGAGTGT  1088


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