BAC Information

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BAC

Clone NameB6Ng01-184K04
Chromosome5 (Build37)
Map Location 102,428,076 - 102,475,410
singlet/doubletdoublet
Overlap geneWdfy3
Upstream geneLOC100041888, LOC100040902, Cycs-ps2, LOC100040920, Nkx6-1, Cds1
Downstream geneEG666515, EG666527, LOC625780, Arhgap24, Mapk10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184K04.bB6Ng01-184K04.g
ACCGA009961GA009962
length1,1651,148
definitionB6Ng01-184K04.b B6Ng01-184K04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,428,076 - 102,429,230)(102,474,292 - 102,475,410)
sequence
gaattccttgcctcattcactcctccagacctcgtctgttccacacatgt
tacaataacccattcagtgccggggagacagactatacagcgaggtgctt
cctgctcagggagatgtgggatttcatcagccagccaggctgtgttctca
aaactcatgtgacagagccactcctttaaaggcattgcacattgttcttg
caatatctgaatcagctcaatatatcttcttctagcggcccatcttcctc
tcggaaggaaggacagacactgtgccataaaatacatgaatagttcctta
aaattctcctctggtggaggaggactgagtgtttgaaaacactctataac
aatgtcaggcatcatgggctgaaaccctgatgatgtctggacgatgtctc
ctcaggctgaagggtggcacaagccctgctggtctcttctcctactggac
aacagctcacacagagctgggaagggaacaaagacacacctaaaacaggt
taaacatgtctgctagagtcagcacttgaccattaaaaccaaataataat
ctactactatgtgcacttcctgtctaaaggcttaaacagaaaactcaggc
cgtgaaggatataacttttctcctcatcacctaacttcccttgggaagta
acagactcttaaggtcacaatacagtatcagtgcacgcccgtagtgcctc
atgtcagatacatgttaacacatgctagagatgatgacagtttgtactga
acatactaaaaacaacgatacaggacagcagcatgaaaggcttggacttc
actactcacacttggggtcaacaaagcacgccatggaaagtagcttttac
acagtgcgcactcagcagcatctcgaggagggaagtcagacctcagtggc
tgtgtccccctgtccccccccccacttggtttgcatcttcgtataactat
ctggtttgattaccaaggttttgacaggggctggtttccattctaacaca
tacctaacttaactgtcaagtttcctgaacactgcatctctggagcttct
cagtaatggtgggaacaagaagtttaaccctgtagcgggtacctctggac
ttttttaaaaagatacatactgaaaattacatcagtgtctaaggtacaat
atatattactaattc

gaattcactcagtgggtgatggcatacctctgagtatcagtggttctgtg
atggggcgaaatctaacaggagagccctcagtctgaatgggaggatccta
tcaggcttcatcctctagtgactgtcgatccagcaggctgactgcttcag
tggcagaggttagaccagctgtgaccgggttggaggcagtgggaggggcc
ccgtctgatggtgggtggggccaggtcagcacttggaagacagcagactt
cttgtgactttttccttcccttcctgcttttcattgcatgatctggcatg
tgtcccagaagagccatgggaggctgtaaaatggcttattaaaagtttct
ttcagaagatgggcattttgttatcatttaatgctccactgtgtttaaac
tcagagaccccctgaaaactgctagagactgagaaacagcatttttccca
ttgatctacaaactatgaagagtttaattggttttaagcctgttagactt
tgctcagtagaacccccatgtttagtagcgcagggtttagtgagacagag
gtgtggctaacactttagctacgtctggagttaaggtgactgcttctaat
ttatacaatttagtttcgaaattcaaatttttgtgtatgaacatctgtgc
atttaaaaatgctcagcctttgacatcatacataccagatttatcctaag
ttagaggcaggcaaagcatgatataaatatatgtagacttataagggcca
gagtggaaattctgtctaaattttgtcctgtttaaaacttgacgccttaa
aaatgtgttgtgtgtgccacagttggaaatgcacctacatcatttcctaa
gcatttcttttggctgaacttgcactgaaaatgagagcgtagaatgcttc
catcaggctgtaccggtatttttatgtctgcacggtcactgtatctgtaa
gatggcaatgctggcttcagaagccacgggatcgaaggaaaaacacttgg
cgccccttaagctttgctgtttgcaagttgcctgggcttcctgcttcctt
tcaacttctacttaatctgaatagctacttggggccctggcccgctgaga
cctgggcccgaaccaaataatctgcaccccaagtcctgtgtagaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_102428076_102429230
seq2: B6Ng01-184K04.b_33_1197

seq1  GAATTCCTTGCCTCATTCACTCCTCCAGACCTCGTCTGTTCCACACATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGCCTCATTCACTCCTCCAGACCTCGTCTGTTCCACACATGT  50

seq1  TACAATAACCCATTCAGTGCCGGGGAGACAGACTATACAGCGAGGTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAACCCATTCAGTGCCGGGGAGACAGACTATACAGCGAGGTGCTT  100

seq1  CCTGCTCAGGGAGATGTGGGATTTCATCAGCCAGCCAGGCTGTGTTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCAGGGAGATGTGGGATTTCATCAGCCAGCCAGGCTGTGTTCTCA  150

seq1  AAACTCATGTGACAGAGCCACTCCTTTAAAGGCATTGCACATTGTTCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCATGTGACAGAGCCACTCCTTTAAAGGCATTGCACATTGTTCTTG  200

seq1  CAATATCTGAATCAGCTCAATATATCTTCTTCTAGCGGCCCATCTTCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCTGAATCAGCTCAATATATCTTCTTCTAGCGGCCCATCTTCCTC  250

seq1  TCGGAAGGAAGGACAGACACTGTGCCATAAAATACATGAATAGTTCCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAAGGAAGGACAGACACTGTGCCATAAAATACATGAATAGTTCCTTA  300

seq1  AAATTCTCCTCTGGTGGAGGAGGACTGAGTGTTTGAAAACACTCTATAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTCCTCTGGTGGAGGAGGACTGAGTGTTTGAAAACACTCTATAAC  350

seq1  AATGTCAGGCATCATGGGCTGAAACCCTGATGATGTCTGGACGATGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAGGCATCATGGGCTGAAACCCTGATGATGTCTGGACGATGTCTC  400

seq1  CTCAGGCTGAAGGGTGGCACAAGCCCTGCTGGTCTCTTCTCCTACTGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTGAAGGGTGGCACAAGCCCTGCTGGTCTCTTCTCCTACTGGAC  450

seq1  AACAGCTCACACAGAGCTGGGAAGGGAACAAAGACACACCTAAAACAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTCACACAGAGCTGGGAAGGGAACAAAGACACACCTAAAACAGGT  500

seq1  TAAACATGTCTGCTAGAGTCAGCACTTGACCATTAAAACCAAATAATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATGTCTGCTAGAGTCAGCACTTGACCATTAAAACCAAATAATAAT  550

seq1  CTACTACTATGTGCACTTCCTGTCTAAAGGCTTAAACAGAAAACTCAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACTATGTGCACTTCCTGTCTAAAGGCTTAAACAGAAAACTCAGGC  600

seq1  CGTGAAGGATATAACTTTTCTCCTCATCACCTAACTTCCCTTGGGAAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAAGGATATAACTTTTCTCCTCATCACCTAACTTCCCTTGGGAAGTA  650

seq1  ACAGACTCTTAAGGTCACAATACAGTATCAGTGCACGCCCGTAGTGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTCTTAAGGTCACAATACAGTATCAGTGCACGCCCGTAGTGCCTC  700

seq1  ATGTCAGATACATGTTAACACATGCTAGAGATGATGACAGTTTGTACTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGATACATGTTAACACATGCTAGAGATGATGACAGTTTGTACTGA  750

seq1  ACATACTAAAAACAACGATACAGGACAGCAGCATGAAAGGCTTGGACTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTAAAAACAACGATACAGGACAGCAGCATGAAAGGCTTGGACTTC  800

seq1  ACTACTCACACTTGGGGTCAACAAAGCACGCCATGGAAAGTAGCTTTTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCACACTTGGGGTCAACAAAGCACGCCATGGAAAGTAGCTTTTAC  850

seq1  ACAGTGCGCACTCAGCAGCATCTCGAGGAGGGAAGTCAGACCTCAGTGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCGCACTCAGCAGCATCTCGAGGAGGGAAGTCAGACCTCAGTGGC  900

seq1  TGTGTCCCCCTGT-CCCCCCCCCACTTGGTTTGCATCTTCGTATAACTAT  949
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCCCCTGTCCCCCCCCCCACTTGGTTTGCATCTTCGTATAACTAT  950

seq1  CTGGTTTGATTACC-AGGTTTTGACAGGGGCT-GTTTCCATTCTAACACA  997
      |||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  CTGGTTTGATTACCAAGGTTTTGACAGGGGCTGGTTTCCATTCTAACACA  1000

seq1  TACCTAACTTAACTGTCAAGTTTCCTGAACACTGCATCTTCTGAGCTTCT  1047
      |||||||||||||||||||||||||||||||||||||||   ||||||||
seq2  TACCTAACTTAACTGTCAAGTTTCCTGAACACTGCATCTCTGGAGCTTCT  1050

seq1  CAGTA----TGTGGACAAG-AGTTTAACCTTGTAGCGGGTA-CTCT-GAC  1090
      |||||    || | ||||| ||||||||| ||||||||||| |||| |||
seq2  CAGTAATGGTGGGAACAAGAAGTTTAACCCTGTAGCGGGTACCTCTGGAC  1100

seq1  TTTTT--AAAAGATACATACTGAAAATACAATCAGTGTCTTTAAGTACAA  1138
      |||||  ||||||||||||||||||||   ||||||||| | | ||||||
seq2  TTTTTTAAAAAGATACATACTGAAAATTACATCAGTGTC-TAAGGTACAA  1149

seq1  TTATATATTACTTATTC  1155
       ||||||||||| ||||
seq2  -TATATATTACTAATTC  1165


seq1: chr5_102474292_102475410
seq2: B6Ng01-184K04.g_67_1214 (reverse)

seq1  TTCTTCTCTTACACAGG-CTTTGGGTGCAGATTATCTGGTTCGG--CCAG  47
      ||||||   |||||||| ||| ||||||||||||| ||||||||  ||||
seq2  TTCTTC---TACACAGGACTTGGGGTGCAGATTATTTGGTTCGGGCCCAG  47

seq1  TTCTCAGC-GGCCAGG--CCCAAGTAGCTA-TCAGA-TAAGTAGAAGTGG  92
       ||||||| |||||||  |||||||||||| ||||| ||||||||||| |
seq2  GTCTCAGCGGGCCAGGGCCCCAAGTAGCTATTCAGATTAAGTAGAAGTTG  97

seq1  AA--GGAGCAGGAAG-CCAGGCAAC-TGCAAACAGC-AAGCT---AGGGC  134
      ||  | ||||||||| ||||||||| |||||||||| |||||    ||||
seq2  AAAGGAAGCAGGAAGCCCAGGCAACTTGCAAACAGCAAAGCTTAAGGGGC  147

seq1  GCC-AGTGTTTT--CCTCGAT-CCGT-GCTTCTGA--GCAGCA-TGCCAT  176
      ||| ||||||||  | ||||| |||| ||||||||   ||||| ||||||
seq2  GCCAAGTGTTTTTCCTTCGATCCCGTGGCTTCTGAAGCCAGCATTGCCAT  197

seq1  C-TACAGATACAGTGA-CGTGCAGACAT-AAAATACC-GTACAG-CTGAT  221
      | |||||||||||||| ||||||||||| |||||||| |||||| |||||
seq2  CTTACAGATACAGTGACCGTGCAGACATAAAAATACCGGTACAGCCTGAT  247

seq1  GG-AGCATTCTACGCTCTCA-TTTCAGTGCAAGTTCAGCCAAAAGAAATG  269
      || ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGAAGCATTCTACGCTCTCATTTTCAGTGCAAGTTCAGCCAAAAGAAATG  297

seq1  CTTAGGAAATGATGTAGGTGCA-TTCCAACTGTGGCACACACAACACATT  318
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTTAGGAAATGATGTAGGTGCATTTCCAACTGTGGCACACACAACACATT  347

seq1  TTTAAGGCGTCAAGTTTTAAACAGGACAAAATTTAGACAGAATTTCCACT  368
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGCGTCAAGTTTTAAACAGGACAAAATTTAGACAGAATTTCCACT  397

seq1  CTGGCCCTTATAAGTCTACATATATTTATATCATGCTTTGCCTGCCTCTA  418
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCTTATAAGTCTACATATATTTATATCATGCTTTGCCTGCCTCTA  447

seq1  ACTTAGGATAAATCTGGTATGTATGATGTCAAAGGCTGAGCATTTTTAAA  468
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGATAAATCTGGTATGTATGATGTCAAAGGCTGAGCATTTTTAAA  497

seq1  TGCACAGATGTTCATACACAAAAATTTGAATTTCGAAACTAAATTGTATA  518
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGATGTTCATACACAAAAATTTGAATTTCGAAACTAAATTGTATA  547

seq1  AATTAGAAGCAGTCACCTTAACTCCAGACGTAGCTAAAGTGTTAGCCACA  568
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAAGCAGTCACCTTAACTCCAGACGTAGCTAAAGTGTTAGCCACA  597

seq1  CCTCTGTCTCACTAAACCCTGCGCTACTAAACATGGGGGTTCTACTGAGC  618
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTCTCACTAAACCCTGCGCTACTAAACATGGGGGTTCTACTGAGC  647

seq1  AAAGTCTAACAGGCTTAAAACCAATTAAACTCTTCATAGTTTGTAGATCA  668
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTAACAGGCTTAAAACCAATTAAACTCTTCATAGTTTGTAGATCA  697

seq1  ATGGGAAAAATGCTGTTTCTCAGTCTCTAGCAGTTTTCAGGGGGTCTCTG  718
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAAAATGCTGTTTCTCAGTCTCTAGCAGTTTTCAGGGGGTCTCTG  747

seq1  AGTTTAAACACAGTGGAGCATTAAATGATAACAAAATGCCCATCTTCTGA  768
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAACACAGTGGAGCATTAAATGATAACAAAATGCCCATCTTCTGA  797

seq1  AAGAAACTTTTAATAAGCCATTTTACAGCCTCCCATGGCTCTTCTGGGAC  818
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTTTTAATAAGCCATTTTACAGCCTCCCATGGCTCTTCTGGGAC  847

seq1  ACATGCCAGATCATGCAATGAAAAGCAGGAAGGGAAGGAAAAAGTCACAA  868
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCAGATCATGCAATGAAAAGCAGGAAGGGAAGGAAAAAGTCACAA  897

seq1  GAAGTCTGCTGTCTTCCAAGTGCTGACCTGGCCCCACCCACCATCAGACG  918
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTGCTGTCTTCCAAGTGCTGACCTGGCCCCACCCACCATCAGACG  947

seq1  GGGCCCCTCCCACTGCCTCCAACCCGGTCACAGCTGGTCTAACCTCTGCC  968
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCCTCCCACTGCCTCCAACCCGGTCACAGCTGGTCTAACCTCTGCC  997

seq1  ACTGAAGCAGTCAGCCTGCTGGATCGACAGTCACTAGAGGATGAAGCCTG  1018
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGCAGTCAGCCTGCTGGATCGACAGTCACTAGAGGATGAAGCCTG  1047

seq1  ATAGGATCCTCCCATTCAGACTGAGGGCTCTCCTGTTAGATTTCGCCCCA  1068
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATCCTCCCATTCAGACTGAGGGCTCTCCTGTTAGATTTCGCCCCA  1097

seq1  TCACAGAACCACTGATACTCAGAGGTATGCCATCACCCACTGAGTGAATT  1118
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAACCACTGATACTCAGAGGTATGCCATCACCCACTGAGTGAATT  1147

seq1  C  1119
      |
seq2  C  1148


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