BAC Information

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BAC

Clone NameB6Ng01-184N21
Chromosome5 (Build37)
Map Location 48,379,960 - 48,508,479
singlet/doubletdoublet
Overlap geneSlit2
Upstream geneLOC100040865, LOC100040876
Downstream gene4933428G09Rik, Kcnip4, LOC100041668
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184N21.bB6Ng01-184N21.g
ACCGA010135GA010136
length1,1661,060
definitionB6Ng01-184N21.b B6Ng01-184N21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,507,310 - 48,508,479)(48,379,960 - 48,381,021)
sequence
gaattcagaaaggaacaataaagaaggaaaatccattctcagttacttta
aaagcacttagacaaacttaaactgctctttctatgacactcgctacacc
atagggtaaaagaaaaaggacacattttcagactctcaattccctatcta
caaagtatgaatcactctggtgatgacatccagacccagaactgtcgaaa
ggatcatatgagaaatgtgtatacggtcaggaatgagacctatagacaac
acgacatgtttaaacaacagatggcttgtacctgaattagccaagataaa
caacagaatattaaggtgctagttaatgagcatgttggtcatattttcat
tcattcattcattcattcattcattcattcaatcaagaagtgaaaaaatg
tgatagtaatactacatataataaagatggcattgttttcgaaataccaa
tgcacatttatgtgaatagggataatgcaaatgtttaaatattactgtgc
tcaaaaatagagatggaaactcagtaaattttaaaccatgtacagaaagt
catcctttcaggatgtttttctttttgttatgagccaaatatttcaaagt
tatatgtatggttgtaaggctgcatcataaaatataatttgagatacttt
taaatatttactatacatagcacatttttgtactcactaaacaatattaa
cttacactttaatggttaagctcagaaaagaaaaaaataaatccttacct
aaggaattttaaacattctaatatcacataataatgtgctgaaatatgtt
tctttgattattagctttctttggaaatttccaatgattagtgctttaca
aaatcataaattttcaagtatcatggcacacgtctttaatcccgacacct
ggaaagcagatgcaggggaatctctctgagttccaggcctgcctggtcta
cgtggtgcatgttgagttcgaggccaaccagagctacattagaaaaattt
ctcaaaaacaaacaacaacaaacaaacaacaaacaaggtcataaattcag
tacactttttttgtagagtcattatttttcactgtaagatttgtaagaaa
ggaggtttaatgttaatatcttgcagcttggattgccatgtgcttagctt
atccatatatggatgt

gaattcctatgttaggaacacaggtgagatcagtaaaagaaaacagctct
caaagttgccctgtgctctgagtgcccctcatgggcttatgctggagttt
taggtttcagatcttacttttcagaactaactgctatatgacacttgttc
agtattttttaaaaacaaacgccttgtgatatggaaactgcttctccaca
gcctcacccccctgaattctctctctctctctctctctctctctctctct
ctcaggcttcattactgaatttgctagtgactttcaattcagggcaaaat
agaatgggagagtcagaaaggggctgcaggtttccgctgctgctgaattg
cagcctcctcagatggcaacattcagcagcatgttctattttgcatttca
gtcagctcatggagaacagaatcagcaccatcgagaggggagcattccag
gatcttaaggagctggaaagactgtaagtattttcagttctaaacccatg
gcaacatgtctgtgtgtttagagccacttggatgtcaaggattatgtctt
cagtttcgtggtggcttagcttttaaagtttaagaggaaaaggcaggaac
aaatggtttccaagatagagtagaatcctgggtaaagaacaggaacttgt
gtgaaagcctaaaagttcagggcttcccagagatagttccttgacgattc
ttgctttgacactaacttagcctcctgtaggaaagagtgattggtaattt
tatttgtactttatggaaagagaaacttaactcagaatcttgtaagcatc
catgctgttactgagtgtcccactattgatactttaggaaattttaaaag
gggttgttgtggataagtgatttctttgatgtttaataacttacagtgaa
cattgataatagtggttattctcaattctattttattgttataatagctt
tctaaaattttactgcttcagaaaataagcctaggttataaagtagggat
gggtgtcatctgctctggccatttttttcatgaagttcagagtaaacttg
cctcttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_48507310_48508479
seq2: B6Ng01-184N21.b_46_1211 (reverse)

seq1  ACATCCATATAAATGATAA-CTTAGCACAT-GCAATCCAAACTTCAAGAT  48
      |||||||||| |  ||||| || ||||||| ||||||||| || ||||||
seq2  ACATCCATAT-ATGGATAAGCTAAGCACATGGCAATCCAAGCTGCAAGAT  49

seq1  ATTAACAATTAACCTCCTTTCTTACAAATCTTAACAGTTGAAAAT-ATGA  97
      ||||||| | |||||||||||||||||||||| |||||  ||||| ||||
seq2  ATTAACATTAAACCTCCTTTCTTACAAATCTT-ACAGTGAAAAATAATGA  98

seq1  CTCTTACAAAAAGTTGTACCTGAATTTATGACCTTTGTTTGTTTGTTTGT  147
      ||||   |||||  |||| |||||||||||||| ||||||| ||||||||
seq2  CTCTACAAAAAAAGTGTA-CTGAATTTATGACC-TTGTTTG-TTGTTTGT  145

seq1  TTGTTTGTTTGTTTGTTTTTGAGGAATTTTTCTAATGTAGCTCTGGTTGG  197
      |||||   ||||||||||||||| ||||||||||||||||||||||||||
seq2  TTGTT--GTTGTTTGTTTTTGAGAAATTTTTCTAATGTAGCTCTGGTTGG  193

seq1  CCTCGAACTCAACATGCACCACGTAGACCAGGCAGGCCTGGAACTCAGAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGAACTCAACATGCACCACGTAGACCAGGCAGGCCTGGAACTCAGAG  243

seq1  AGATTCCCCTGCATCTGCTTTCCAGGTGTCGGGATTAAAGACGTGTGCCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCCCTGCATCTGCTTTCCAGGTGTCGGGATTAAAGACGTGTGCCA  293

seq1  TGATACTTGAAAATTTATGATTTTGTAAAGCACTAATCATTGGAAATTTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTTGAAAATTTATGATTTTGTAAAGCACTAATCATTGGAAATTTC  343

seq1  CAAAGAAAGCTAATAATCAAAGAAACATATTTCAGCACATTATTATGTGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAGCTAATAATCAAAGAAACATATTTCAGCACATTATTATGTGA  393

seq1  TATTAGAATGTTTAAAATTCCTTAGGTAAGGATTTATTTTTTTCTTTTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAATGTTTAAAATTCCTTAGGTAAGGATTTATTTTTTTCTTTTCT  443

seq1  GAGCTTAACCATTAAAGTGTAAGTTAATATTGTTTAGTGAGTACAAAAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTAACCATTAAAGTGTAAGTTAATATTGTTTAGTGAGTACAAAAAT  493

seq1  GTGCTATGTATAGTAAATATTTAAAAGTATCTCAAATTATATTTTATGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTATGTATAGTAAATATTTAAAAGTATCTCAAATTATATTTTATGAT  543

seq1  GCAGCCTTACAACCATACATATAACTTTGAAATATTTGGCTCATAACAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTTACAACCATACATATAACTTTGAAATATTTGGCTCATAACAAA  593

seq1  AAGAAAAACATCCTGAAAGGATGACTTTCTGTACATGGTTTAAAATTTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAACATCCTGAAAGGATGACTTTCTGTACATGGTTTAAAATTTAC  643

seq1  TGAGTTTCCATCTCTATTTTTGAGCACAGTAATATTTAAACATTTGCATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTCCATCTCTATTTTTGAGCACAGTAATATTTAAACATTTGCATT  693

seq1  ATCCCTATTCACATAAATGTGCATTGGTATTTCGAAAACAATGCCATCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTATTCACATAAATGTGCATTGGTATTTCGAAAACAATGCCATCTT  743

seq1  TATTATATGTAGTATTACTATCACATTTTTTCACTTCTTGATTGAATGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATGTAGTATTACTATCACATTTTTTCACTTCTTGATTGAATGAA  793

seq1  TGAATGAATGAATGAATGAATGAATGAAAATATGACCAACATGCTCATTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAATGAATGAATGAATGAATGAAAATATGACCAACATGCTCATTA  843

seq1  ACTAGCACCTTAATATTCTGTTGTTTATCTTGGCTAATTCAGGTACAAGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCACCTTAATATTCTGTTGTTTATCTTGGCTAATTCAGGTACAAGC  893

seq1  CATCTGTTGTTTAAACATGTCGTGTTGTCTATAGGTCTCATTCCTGACCG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTTGTTTAAACATGTCGTGTTGTCTATAGGTCTCATTCCTGACCG  943

seq1  TATACACATTTCTCATATGATCCTTTCGACAGTTCTGGGTCTGGATGTCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACATTTCTCATATGATCCTTTCGACAGTTCTGGGTCTGGATGTCA  993

seq1  TCACCAGAGTGATTCATACTTTGTAGATAGGGAATTGAGAGTCTGAAAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGAGTGATTCATACTTTGTAGATAGGGAATTGAGAGTCTGAAAAT  1043

seq1  GTGTCCTTTTTCTTTTACCCTATGGTGTAGCGAGTGTCATAGAAAGAGCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTTTTTCTTTTACCCTATGGTGTAGCGAGTGTCATAGAAAGAGCA  1093

seq1  GTTTAAGTTTGTCTAAGTGCTTTTAAAGTAACTGAGAATGGATTTTCCTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGTTTGTCTAAGTGCTTTTAAAGTAACTGAGAATGGATTTTCCTT  1143

seq1  CTTTATTGTTCCTTTCTGAATTC  1170
      |||||||||||||||||||||||
seq2  CTTTATTGTTCCTTTCTGAATTC  1166


seq1: chr5_48379960_48381021
seq2: B6Ng01-184N21.g_66_1125

seq1  GAATTCCTATGTTAGGAACACAGGTGAGATCAGTAAAAGAAAACAGCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGTTAGGAACACAGGTGAGATCAGTAAAAGAAAACAGCTCT  50

seq1  CAAAGTTGCCCTGTGCTCTGAGTGCCCCTCATGGGCTTATGCTGGAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTGCCCTGTGCTCTGAGTGCCCCTCATGGGCTTATGCTGGAGTTT  100

seq1  TAGGTTTCAGATCTTACTTTTCAGAACTAACTGCTATATGACACTTGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTCAGATCTTACTTTTCAGAACTAACTGCTATATGACACTTGTTC  150

seq1  AGTATTTTTTAAAAACAAACGCCTTGTGATATGGAAACTGCTTCTCCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTTTAAAAACAAACGCCTTGTGATATGGAAACTGCTTCTCCACA  200

seq1  GCCTCACCCCCCTGAAT--TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  248
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  GCCTCACCCCCCTGAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  250

seq1  CTCAGGCTTCATTACTGAATTTGCTAGTGACTTTCAATTCAGGGCAAAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTTCATTACTGAATTTGCTAGTGACTTTCAATTCAGGGCAAAAT  300

seq1  AGAATGGGAGAGTCAGAAAGGGGCTGCAGGTTTCCGCTGCTGCTGAATTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGGAGAGTCAGAAAGGGGCTGCAGGTTTCCGCTGCTGCTGAATTG  350

seq1  CAGCCTCCTCAGATGGCAACATTCAGCAGCATGTTCTATTTTGCATTTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCCTCAGATGGCAACATTCAGCAGCATGTTCTATTTTGCATTTCA  400

seq1  GTCAGCTCATGGAGAACAGAATCAGCACCATCGAGAGGGGAGCATTCCAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTCATGGAGAACAGAATCAGCACCATCGAGAGGGGAGCATTCCAG  450

seq1  GATCTTAAGGAGCTGGAAAGACTGTAAGTATTTTCAGTTCTAAACCCATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAAGGAGCTGGAAAGACTGTAAGTATTTTCAGTTCTAAACCCATG  500

seq1  GCAACATGTCTGTGTGTTTAGAGCCACTTGGATGTCAAGGATTATGTCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATGTCTGTGTGTTTAGAGCCACTTGGATGTCAAGGATTATGTCTT  550

seq1  CAGTTTCGTGGTGGCTTAGCTTTTAAAGTTTAAGAGGAAAAGGCAGGAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCGTGGTGGCTTAGCTTTTAAAGTTTAAGAGGAAAAGGCAGGAAC  600

seq1  AAATGGTTTCCAAGATAGAGTAGAATCCTGGGTAAAGAACAGGAACTTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTTTCCAAGATAGAGTAGAATCCTGGGTAAAGAACAGGAACTTGT  650

seq1  GTGAAAGCCTAAAAGTTCAGGGCTTCCCAGAGATAGTTCCTTGACGATTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGCCTAAAAGTTCAGGGCTTCCCAGAGATAGTTCCTTGACGATTC  700

seq1  TTGCTTTGACACTAACTTAGCCTCCTGTAGGAAAGAGTGATTGGTAATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGACACTAACTTAGCCTCCTGTAGGAAAGAGTGATTGGTAATTT  750

seq1  TATTTGTACTTTATGGAAAGAGAAACTTAACTCAGAATCTTGTAAGCATC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTACTTTATGGAAAGAGAAACTTAACTCAGAATCTTGTAAGCATC  800

seq1  CATGCTGTTACTGAGTGTCCCACTATTGATACTTTAGGAAA-TTTAAAAG  847
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CATGCTGTTACTGAGTGTCCCACTATTGATACTTTAGGAAATTTTAAAAG  850

seq1  GGGTTGTTGTGGATAAGTGATTTCTTTGATGTTTAAT-ACTTACAGTGAA  896
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGGTTGTTGTGGATAAGTGATTTCTTTGATGTTTAATAACTTACAGTGAA  900

seq1  CATTGATAATAGTGGTTATTCTCAATTCTATTTAATTGTTTATAATAGC-  945
      ||||||||||||||||||||||||||||||||| |||| |||||||||| 
seq2  CATTGATAATAGTGGTTATTCTCAATTCTATTTTATTG-TTATAATAGCT  949

seq1  TTCTAAAATATTACTGC-TCAGAAAAATAAGCTAAGGGTTATTAAAGTAG  994
      ||||||||| ||||||| |||| |||||||||  | ||||| ||||||||
seq2  TTCTAAAATTTTACTGCTTCAG-AAAATAAGCCTA-GGTTA-TAAAGTAG  996

seq1  GGATGGGTTGTCATCTGCTCCTGGCATTTTTTTTTCATGAAGTTTAAGAG  1044
      ||||||| ||||||||||||  | ||  |||||||||||||| || ||||
seq2  GGATGGG-TGTCATCTGCTCTGGCCA--TTTTTTTCATGAAG-TTCAGAG  1042

seq1  TAAACTTTGCTCTTAAAA  1062
      |||||||  |||||||||
seq2  TAAACTTGCCTCTTAAAA  1060


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