BAC Information

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BAC

Clone NameB6Ng01-185F19
Chromosome5 (Build37)
Map Location 98,107,192 - 98,254,930
singlet/doubletdoublet
Overlap genenone
Upstream geneFras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008, Gk2
Downstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185F19.bB6Ng01-185F19.g
ACCGA010497GA010498
length1,204769
definitionB6Ng01-185F19.b B6Ng01-185F19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,107,192 - 98,108,374)(98,254,167 - 98,254,930)
sequence
gaattccactataagacccattaacattctacattgtaagacaatcttat
aagaacagcattgacatgagtaaatggtatttccaaatatgatttagttg
cttaagttggagattagttcctggtcctaattttagtagcagcatcaatt
actggtggaaaatatgtgacttatagatgtggcataccatcccctagaca
ctggtgcagtttcttttaatcgggtgacatccaagtctccaaataaataa
aagtgcaagttcggtttttaaaatacagaagatttttaggtcattattgc
acaccggtagagtctgttgggtgcaatagttcatactcttccttctgcaa
aactctcttgggtcagtgataaaatatacatggtaccattattcctgcct
gccaattttgatcagaagtgtgacattatcctttaacttaacatttatga
agcaatttgcaataggcacgggggtgaacacgatgatgttcaaatgataa
attgtaaactgatgggaataccaacaaattgaggaaataccttgtgttgt
tggaccctggttgtactttcaaccattctactgccctgcccatgagaaat
atgcaaatgcatttctgctacagtctttgactcccagggctagtaaagcc
cacagttttatactgggaagctggtgggtgtgtttgtatttgatggatgc
aaataatgttggcttgaatattttgattattctacaaggtatttttctct
aatcaagagagtgccacagaactaaattttattccagaaattaatacagt
ttatttttgtctattaccctgtctcaatcaccaagcaaattaaaatgact
cttgaaaataatgtctgaacaaaaccgttttcaacactaaaacaaaaatg
aagtaaaaatcatgaacctttgtaaaaaacattttaacgttctttttaaa
aacattttaccttttgattttttttttttcttgattatttccactgtgta
gactaggctgtcctggaaacttactcttatagacccaagctcacctcaaa
actcaaagatccaccttactcctgcctccaagtgcctggaattaaagaaa
tgtacacaccaccaattggctggctggcctttttgacttctatttttacc
tgaaaaacacttagatctcacccgattagtacactcctgatgagcttctc
tccc
gaattctattaatcacaaacgaaatctacttaatttgaacaagttttata
gtaaaaatatgttgaaagagatatctgagggaaatatactacttaaattt
ttcttataggatataaaaaagtatattttggtggtttgtttcaatataag
tcagaaaagctggtggacagcagttggcgtacataagcaattttcctatg
gctagctgccgaaaccaatagaaacatttatttccccagatttaagaaag
cgtatcagtgaaggtctgagcaggaaagagagcgtattctaagtctttca
accagaagaaagaaaggcaacagacgtgaacgagcagaaggtcaactggg
ctaagttagatcaacccagacatgatcacagaggatgcttgagaaaggag
cactggaaaccggggctgtggggatgaagaagcatgggcaaggcttcagg
catgggtaagaaagtagctgcaagggcagctatggaaagagacttctcag
catccctccctgctcctgctaatctttcatgattcttccccatagctaaa
cttagtggaaagtcactgaggaggaagaccaagtaatatagattagtgtg
gagctgatcagagaagggaatgtgtgggaggtgggtttgagtagataaaa
tgactgacattatataaaaaaaaaaaatgctatattcttgatctgttaga
cagcaaggggcagggagctgttactctgtgtcagggtttccaaacttgat
acacataaaaattatataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_98107192_98108374
seq2: B6Ng01-185F19.b_43_1246

seq1  GAATTCCACTATAAGACCCATTAACATTCTACATTGTAAGACAATCTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTATAAGACCCATTAACATTCTACATTGTAAGACAATCTTAT  50

seq1  AAGAACAGCATTGACATGAGTAAATGGTATTTCCAAATATGATTTAGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGCATTGACATGAGTAAATGGTATTTCCAAATATGATTTAGTTG  100

seq1  CTTAAGTTGGAGATTAGTTCCTGGTCCTAATTTTAGTAGCAGCATCAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTTGGAGATTAGTTCCTGGTCCTAATTTTAGTAGCAGCATCAATT  150

seq1  ACTGGTGGAAAATATGTGACTTATAGATGTGGCATACCATCCCCTAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGGAAAATATGTGACTTATAGATGTGGCATACCATCCCCTAGACA  200

seq1  CTGGTGCAGTTTCTTTTAATCGGGTGACATCCAAGTCTCCAAATAAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCAGTTTCTTTTAATCGGGTGACATCCAAGTCTCCAAATAAATAA  250

seq1  AAGTGCAAGTTCGGTTTTTAAAATACAGAAGATTTTTAGGTCATTATTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCAAGTTCGGTTTTTAAAATACAGAAGATTTTTAGGTCATTATTGC  300

seq1  ACACCGGTAGAGTCTGTTGGGTGCAATAGTTCATACTCTTCCTTCTGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCGGTAGAGTCTGTTGGGTGCAATAGTTCATACTCTTCCTTCTGCAA  350

seq1  AACTCTCTTGGGTCAGTGATAAAATATACATGGTACCATTATTCCTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCTTGGGTCAGTGATAAAATATACATGGTACCATTATTCCTGCCT  400

seq1  GCCAATTTTGATCAGAAGTGTGACATTATCCTTTAACTTAACATTTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTTTGATCAGAAGTGTGACATTATCCTTTAACTTAACATTTATGA  450

seq1  AGCAATTTGCAATAGGCACGGGGGTGAACACGATGATGTTCAAATGATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTTGCAATAGGCACGGGGGTGAACACGATGATGTTCAAATGATAA  500

seq1  ATTGTAAACTGATGGGAATACCAACAAATTGAGGAAATACCTTGTGTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAACTGATGGGAATACCAACAAATTGAGGAAATACCTTGTGTTGT  550

seq1  TGGACCCTGGTTGTACTTTCAACCATTCTACTGCCCTGCCCATGAGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCTGGTTGTACTTTCAACCATTCTACTGCCCTGCCCATGAGAAAT  600

seq1  ATGCAAATGCATTTCTGCTACAGTCTTTGACTCCCAGGGCTAGTAAAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATGCATTTCTGCTACAGTCTTTGACTCCCAGGGCTAGTAAAGCC  650

seq1  CACAGTTTTATACTGGGAAGCTGGTGGGTGTGTTTGTATTTGATGGATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTTTATACTGGGAAGCTGGTGGGTGTGTTTGTATTTGATGGATGC  700

seq1  AAATAATGTTGGCTTGAATATTTTGATTATTCTACAAGGTATTTTTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGTTGGCTTGAATATTTTGATTATTCTACAAGGTATTTTTCTCT  750

seq1  AATCAAGAGAGTGCCACAGAACTAAATTTTATTCCAGAAATTAATACAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGAGAGTGCCACAGAACTAAATTTTATTCCAGAAATTAATACAGT  800

seq1  TTATTTTTGTCTATTACCCTGTCTCAATCACCAAGCAAATTAAAATGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTGTCTATTACCCTGTCTCAATCACCAAGCAAATTAAAATGACT  850

seq1  CTTGAAAATAATGTCTGAACAAAACCG-TTTCAACACTAAAACAAAAATG  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTGAAAATAATGTCTGAACAAAACCGTTTTCAACACTAAAACAAAAATG  900

seq1  AAGTAAAAATCATGAACC-TTGTAAAAAACATTTTAACGTTC-TTTTAAA  947
      |||||||||||||||||| ||||||||||||||||||||||| |||||||
seq2  AAGTAAAAATCATGAACCTTTGTAAAAAACATTTTAACGTTCTTTTTAAA  950

seq1  AACATTTTACCTTTTGA-TTTTTTTTTTTCTTGATTATTT-CACTGTGTA  995
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  AACATTTTACCTTTTGATTTTTTTTTTTTCTTGATTATTTCCACTGTGTA  1000

seq1  GACTAGGCTGTCCTGG-AACTTACTC-TATAGA-CCAAGCTCACCTC-AA  1041
      |||||||||||||||| ||||||||| |||||| ||||||||||||| ||
seq2  GACTAGGCTGTCCTGGAAACTTACTCTTATAGACCCAAGCTCACCTCAAA  1050

seq1  ACTCAAAGATCCACC-TACTTCTGCCTCCAAGTG-CTGGAATTAAAG--A  1087
      ||||||||||||||| |||| ||||||||||||| ||||||||||||  |
seq2  ACTCAAAGATCCACCTTACTCCTGCCTCCAAGTGCCTGGAATTAAAGAAA  1100

seq1  TGT--ACACCACC-ATTGGCTGGCTGG-CTTTTTGA-TTTTATTTTTTAC  1132
      |||  |||||||| ||||||||||||| |||||||| || |||||||  |
seq2  TGTACACACCACCAATTGGCTGGCTGGCCTTTTTGACTTCTATTTTTACC  1150

seq1  TGAAA-----CTAGATTCTTCACCCATATAGTACA-TCCTGATGAGCTTT  1176
      |||||      |||||   ||||||   ||||||| ||||||||||| ||
seq2  TGAAAAACACTTAGAT--CTCACCCGATTAGTACACTCCTGATGAGC-TT  1197

seq1  CTCTCCC  1183
      |||||||
seq2  CTCTCCC  1204

seq1: chr5_98254167_98254930
seq2: B6Ng01-185F19.g_64_832 (reverse)

seq1  TTATAT-ATTTTTATGTGTATCAAAGTTGG-AGCCCTGACACTGAGTAAC  48
      |||||| |||||||||||||||||  |||| | ||||||||| |||||||
seq2  TTATATAATTTTTATGTGTATCAAGTTTGGAAACCCTGACACAGAGTAAC  50

seq1  AGCT-CCTG-CCCTTGCTGTCTAACTGATCAAGAATTTGGCA-TTTTTTT  95
      |||| |||| ||||||||||||||| |||||||||| | ||| |||||||
seq2  AGCTCCCTGCCCCTTGCTGTCTAACAGATCAAGAATATAGCATTTTTTTT  100

seq1  TTTTATATAATGTCTGTCATTTTATCTACTCAAACCCACCTCCCACACAT  145
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTTATATAATGTCAGTCATTTTATCTACTCAAACCCACCTCCCACACAT  150

seq1  TCCCTTCTCTGATCAGCTCCACACTAATCTATATTACTTGGTCTTCCTCC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTCTGATCAGCTCCACACTAATCTATATTACTTGGTCTTCCTCC  200

seq1  TCAGTGACTTTCCACTAAGTTTAGCTATGGGGAAGAATCATGAAAGATTA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGACTTTCCACTAAGTTTAGCTATGGGGAAGAATCATGAAAGATTA  250

seq1  GCAGGAGCAGGGAGGGATGCTGAGAAGTCTCTTTCCATAGCTGCCCTTGC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGCAGGGAGGGATGCTGAGAAGTCTCTTTCCATAGCTGCCCTTGC  300

seq1  AGCTACTTTCTTACCCATGCCTGAAGCCTTGCCCATGCTTCTTCATCCCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTTTCTTACCCATGCCTGAAGCCTTGCCCATGCTTCTTCATCCCC  350

seq1  ACAGCCCCGGTTTCCAGTGCTCCTTTCTCAAGCATCCTCTGTGATCATGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCCGGTTTCCAGTGCTCCTTTCTCAAGCATCCTCTGTGATCATGT  400

seq1  CTGGGTTGATCTAACTTAGCCCAGTTGACCTTCTGCTCGTTCACGTCTGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTGATCTAACTTAGCCCAGTTGACCTTCTGCTCGTTCACGTCTGT  450

seq1  TGCCTTTCTTTCTTCTGGTTGAAAGACTTAGAATACGCTCTCTTTCCTGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTCTTTCTTCTGGTTGAAAGACTTAGAATACGCTCTCTTTCCTGC  500

seq1  TCAGACCTTCACTGATACGCTTTCTTAAATCTGGGGAAATAAATGTTTCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCTTCACTGATACGCTTTCTTAAATCTGGGGAAATAAATGTTTCT  550

seq1  ATTGGTTTCGGCAGCTAGCCATAGGAAAATTGCTTATGTACGCCAACTGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTTCGGCAGCTAGCCATAGGAAAATTGCTTATGTACGCCAACTGC  600

seq1  TGTCCACCAGCTTTTCTGACTTATATTGAAACAAACCACCAAAATATACT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACCAGCTTTTCTGACTTATATTGAAACAAACCACCAAAATATACT  650

seq1  TTTTTATATCCTATAAGAAAAATTTAAGTAGTATATTTCCCTCAGATATC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATATCCTATAAGAAAAATTTAAGTAGTATATTTCCCTCAGATATC  700

seq1  TCTTTCAACATATTTTTACTATAAAACTTGTTCAAATTAAGTAGATTTCG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAACATATTTTTACTATAAAACTTGTTCAAATTAAGTAGATTTCG  750

seq1  TTTGTGATTAATAGAATTC  764
      |||||||||||||||||||
seq2  TTTGTGATTAATAGAATTC  769