BAC Information

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BAC

Clone NameB6Ng01-185K09
Chromosome5 (Build37)
Map Location 115,970,616 - 115,971,384
singlet/doubletsinglet
Overlap genePxn
Upstream geneBC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021
Downstream geneArbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8, 1500001A10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185K09.bB6Ng01-185K09.g
ACCGA010702GA010703
length952771
definitionB6Ng01-185K09.b B6Ng01-185K09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtacctttcgtttcaaaaaaccttcgaccagttaataaaggtc
cgaagtttgtttactacctagtcctggaggctgggaagtccaagagcgtc
atatcagtatctgctcagcatctgacaaagcccctggcagcctggtgaca
gcagagggtatcacaggtgacagcagagggtaccacaggtgacagaggag
ggtgtcacaggtgacagcagagggcatcacagggcagttgtactagctca
gggtggggtctctctccctccccagcccctttcggaaagtattcttctct
catacactacatcccaacagtttcccttcccttaactcttctcagtcccc
atttcccctctcccctgtgtccactcctgtccgtctcccttcagaaaaga
gcaggcctccaagagaggcccaaaccagtaaacaaatgcagcaagacaag
gcaaaacctcacactgacgctggacaaggcaactcaacaggaggaaaaga
gtccggggagcaggcaaaagaatcagagccacatctgttccccctgttag
gagtcccacaacaacgccaagccaacagccacagcatatatatgcagagg
atgtggtgtagacccctgcagggcctgtgctgctgcatcaggctctgtga
gcgcatgtgtaccctacatagtatattcagagggctgtgttttcctggag
tcctccatcttctatgactcctacagtctttccatcccctcctcttccac
tggaaactctgagaggtgggggagggacccagtggagacctctagtttag
agttagtctcagcccttccctccctccctccctcactccctcataaatat
ctggctgtggatctctgcatctacttccaatctcctgttagttgaagctc
tttgatgacaaactggataatggcattggatttatgagtttaaccaaatg
aa
gaattcctcctgccccttctgtgtctttagttggtttgctgaaggggcca
ggccggaacaagcaagcgtgtcacctggaggtggttgtcaccggcttcct
gaggtcacttgtcatcggtttccaaacatcctgtttgtgcctgtggagta
ggactgttggccaggaggcaggttatctgttccctgccccacccaccctc
aggccgagtgtggggccagggtgtcaaaggtcatcctctcactaaggggc
tcggtttgatgcagctggtggtagattgttgaacatcctgctctcctggt
tcagtacactggttctgtcctgtcctggctctgtgtgctctccttgccct
actttgcctgcccgggacatgtccccctaatgttctggcagcaggatgct
aacagcccttctcagctcccagaactggggtcgctagcctctgcctccct
cagtcagagcgactccacttctcctgcttatgtgttgggcttcagagggg
gttggtgggtggtccttttgtttctctttttgagagggggtcttcacgag
ttgcaggagggcctcacattagctgtgtagccaaggaccgtgaacttctg
atccttctgcctcagtgctgggattacagacttgaagcgcttatgttgtg
tctgttcttggcggtgctgagaatcgaacccagggcctcacggcactaag
ctggtgctgggatacattgggtgtcgtttgttactttttctttctccctc
ctcctcctcctccttctcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_115970616_115971384
seq2: B6Ng01-185K09.g_68_838

seq1  GAATTCCTCCTGCCCCTTCTGTGTCTTTAGTTGGTTTGCTGAAGGGGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTGCCCCTTCTGTGTCTTTAGTTGGTTTGCTGAAGGGGCCA  50

seq1  GGCCGGAACAAGCAAGCGTGTCACCTGGAGGTGGTTGTCACCGGCTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGGAACAAGCAAGCGTGTCACCTGGAGGTGGTTGTCACCGGCTTCCT  100

seq1  GAGGTCACTTGTCATCGGTTTCCAAACATCCTGTTTGTGCCTGTGGAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCACTTGTCATCGGTTTCCAAACATCCTGTTTGTGCCTGTGGAGTA  150

seq1  GGACTGTTGGCCAGGAGGCAGGTTATCTGTTCCCTGCCCCACCCACCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTTGGCCAGGAGGCAGGTTATCTGTTCCCTGCCCCACCCACCCTC  200

seq1  AGGCCGAGTGTGGGGCCAGGGTGTCAAAGGTCATCCTCTCACTAAGGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGAGTGTGGGGCCAGGGTGTCAAAGGTCATCCTCTCACTAAGGGGC  250

seq1  TCGGTTTGATGCAGCTGGTGGTAGATTGTTGAACATCCTGCTCTCCTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTTTGATGCAGCTGGTGGTAGATTGTTGAACATCCTGCTCTCCTGGT  300

seq1  TCAGTACACTGGTTCTGTCCTGTCCTGGCTCTGTGTGCTCTCCTTGCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACACTGGTTCTGTCCTGTCCTGGCTCTGTGTGCTCTCCTTGCCCT  350

seq1  ACTTTGCCTGCCCGGGACATGTCCCCCTAATGTTCTGGCAGCAGGATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCCTGCCCGGGACATGTCCCCCTAATGTTCTGGCAGCAGGATGCT  400

seq1  AACAGCCCTTCTCAGCTCCCAGAACTGGGGTCGCTAGCCTCTGCCTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCCTTCTCAGCTCCCAGAACTGGGGTCGCTAGCCTCTGCCTCCCT  450

seq1  CAGTCAGAGCGACTCCACTTCTCCTGCTTATGTGTTGGGCTTCAGAGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGAGCGACTCCACTTCTCCTGCTTATGTGTTGGGCTTCAGAGGGG  500

seq1  GTTGGTGGGTGGTCCTTTTGTTTCTCTTTTTGAGAGGGGGTCTTCACGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGGGTGGTCCTTTTGTTTCTCTTTTTGAGAGGGGGTCTTCACGAG  550

seq1  TTGCAGGAGGGCCTCACATTAGCTGTGTAGCCAAGGACCGTGAACTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGAGGGCCTCACATTAGCTGTGTAGCCAAGGACCGTGAACTTCTG  600

seq1  ATCCTTCTGCCTCAGTGCTGGGATTACAGACTTGAAGCGCTTATGTTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCTGCCTCAGTGCTGGGATTACAGACTTGAAGCGCTTATGTTGTG  650

seq1  TCTGTTCTTGGCGGTGCTGAGAATCGAACCCAGGGCCTCACGGCACTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTTGGCGGTGCTGAGAATCGAACCCAGGGCCTCACGGCACTAAG  700

seq1  CTGGTGCTGGGATACATTGGGTGTCGTTTGTTACTTTT--CTTCTCCCTC  748
      ||||||||||||||||||||||||||||||||||||||   |||||||||
seq2  CTGGTGCTGGGATACATTGGGTGTCGTTTGTTACTTTTTCTTTCTCCCTC  750

seq1  CTCCTCCTCCTCCTTCTCTTC  769
      |||||||||||||||||||||
seq2  CTCCTCCTCCTCCTTCTCTTC  771