BAC Information

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BAC

Clone NameB6Ng01-186A12
Chromosome5 (Build37)
Map Location 88,903,728 - 88,904,909
singlet/doubletsinglet
Overlap genenone
Upstream geneUgt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn
Downstream geneEnam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4, Gc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186A12.bB6Ng01-186A12.g
ACCGA010984GA010985
length1,183994
definitionB6Ng01-186A12.b B6Ng01-186A12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttaaaaagtttgtatgtttgacattttgctagtgactcaggaa
tttctgttttgaaataattgtattcaagtatcagttcttcagagaatgtt
cttcagtcatctaatatccagtgtcctttcactccactttccactttagt
tttccataaggcttgtgatgacctgaggttgaactacagacatggcattc
tgtttgttccttcttcttcttcttcttcttcttcttcttcttcttcttct
tcttcttcttcttcttcttcatattcttcttcttcttctttttttttttt
tttttttttgagacaggatttctctgtgtagccctggctttcctggaact
cactctgtagaccaggctggcattgaactcataaatcacctacctctgcc
tcccaagtgctgggatgaaaggcatgagcttgttcttactacttcctaat
gcctagcacagtgcgtggtacttgccagtcactcggatctttactgaaca
aacacattttacagaacaataagatggaagatagacattaatccttagaa
cagcatgatagctccacaaaagccatgcttgacacacacaatacaagacc
aaagaaaaggacaaatttgctgtggaagggaaaactacttttctttatgt
tgacttggtaccagatggaaccacgtccgtctgttgatgtcgtttaactg
gctgccatgctgtctataggatgcaatcttttagtgcagaacagaactaa
tggcattacttaggtattggttggtaaagacttagagagcccagataatc
agttagtctcccctcctctcccctcccttccccttcccactccttccccc
tctccctcctttttcttttctcttcttttcttcccctttctcttcaattt
tacctactaaaagcagtaacggtacctcaccactgatagacattcctcct
gtttctgtcttttgggaatctatccttggcttcatgtttggagaagccat
taaaaatgatgtcttaaatgtgctagaacatgtactccaggttgaccttt
taatgctaggttccccaaagcattatcttttacgccaattcatgtctgcc
ttgtgaataatttagaatgtaattgccctatcccacattgaaattcccac
agtatatttctacttgctccctcagcttatctt
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatcctatttgggataggtaaatatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgccttgcagaaactttgcaatttta
tgaggtcccatttatcgattctcgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatgtcttcgaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttcctcaa
tccacttagacttgagctttgtacaaggagataagaatggatcaatttcg
ataaaatcttgctagtgtatgcaatggtgtcagcgtttggatgctgatta
tggggtggatccctggatatggaagtctctacatggaccatcctttcatc
tcagctccaaactttgtctctgtaactccttccaagggtgttttgttccc
acttctaaggaggggcatagtgtccacacttcagtcttcatttttcttga
gtttcatgtgtttgggaaattgtatcttatatcttgggtatcctaggttt
tgggctaatatccacttatcagtgagtacatattgtgtgagttcctttgt
gaatgtgttacctcactcaggatgatgccctccagatccatccatttggc
taggaatttcataaattcattctttttaatagctgagtagtactccattg
tgtagatgtaccacattttctgtatccattctctgttgaggggcatctgg
gttcttttccagcttctggcttattataaataagggctgctatgaacata
gtggagcatgtgtcctttcttaccagttggggcatcttcttgaatattat
gccccagggagaggtatttgctggatctcgtagtactgttgtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_88903728_88904909
seq2: B6Ng01-186A12.b_46_1228 (reverse)

seq1  AAGATAAGCTGTAGTGAGCACAGTGAAGGAAATA-ACTGTGGG-ATTTCC  48
      ||||||||||| || ||||| |||    |||||| |||||||| ||||| 
seq2  AAGATAAGCTG-AGGGAGCA-AGT---AGAAATATACTGTGGGAATTTCA  45

seq1  ATGGTGGATA-GGCATTTACATTCTAATTTATTCACAAGCCAGACATGGA  97
      |||  ||||| |||| ||||||||||| ||||||||||| |||||||| |
seq2  ATGTGGGATAGGGCAATTACATTCTAAATTATTCACAAGGCAGACATGAA  95

seq1  TGGGCGTTAAAGAT-ATGCTTTGGGGAAACTAGCATTAAAAAGGTCAACC  146
      | ||||| |||||| ||||||||||||| |||||||| |||||||||| |
seq2  TTGGCGTAAAAGATAATGCTTTGGGGAACCTAGCATT-AAAAGGTCAA-C  143

seq1  CTGGAGTTACATG-TCTAGCACATTTTAGACATCATTTTTAATGGCTTCT  195
      |||||| |||||| |||||||||||| |||||||||||||||||||||||
seq2  CTGGAG-TACATGTTCTAGCACATTTAAGACATCATTTTTAATGGCTTCT  192

seq1  CCAAACATGAAG-CAAGGATAGATTCCCAAAAGACAGAAACAGGA-GAAT  243
      |||||||||||| |||||||||||||||||||||||||||||||| ||||
seq2  CCAAACATGAAGCCAAGGATAGATTCCCAAAAGACAGAAACAGGAGGAAT  242

seq1  GTCTATCAGTGGTGAGGTACCGTTACTGCTTTTAGTAGGTAAAATTGAAG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATCAGTGGTGAGGTACCGTTACTGCTTTTAGTAGGTAAAATTGAAG  292

seq1  AGAAAGGGGAAGAAAAGAAGAGAAA--GAAAAGGAGGGAGAGGGGGAAGG  341
      |||||||||||||||||||||||||   ||||||||||||||||||||||
seq2  AGAAAGGGGAAGAAAAGAAGAGAAAAGAAAAAGGAGGGAGAGGGGGAAGG  342

seq1  AGTGGGAAGGGGAAGGGAGGGGAGAGGAGGGGAGACTAACTGATTATCTG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAAGGGGAAGGGAGGGGAGAGGAGGGGAGACTAACTGATTATCTG  392

seq1  GGCTCTCTAAGTCTTTACCAACCAATACCTAAGTAATGCCATTAGTTCTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCTAAGTCTTTACCAACCAATACCTAAGTAATGCCATTAGTTCTG  442

seq1  TTCTGCACTAAAAGATTGCATCCTATAGACAGCATGGCAGCCAGTTAAAC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCACTAAAAGATTGCATCCTATAGACAGCATGGCAGCCAGTTAAAC  492

seq1  GACATCAACAGACGGACGTGGTTCCATCTGGTACCAAGTCAACATAAAGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAACAGACGGACGTGGTTCCATCTGGTACCAAGTCAACATAAAGA  542

seq1  AAAGTAGTTTTCCCTTCCACAGCAAATTTGTCCTTTTCTTTGGTCTTGTA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGTTTTCCCTTCCACAGCAAATTTGTCCTTTTCTTTGGTCTTGTA  592

seq1  TTGTGTGTGTCAAGCATGGCTTTTGTGGAGCTATCATGCTGTTCTAAGGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTGTCAAGCATGGCTTTTGTGGAGCTATCATGCTGTTCTAAGGA  642

seq1  TTAATGTCTATCTTCCATCTTATTGTTCTGTAAAATGTGTTTGTTCAGTA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTCTATCTTCCATCTTATTGTTCTGTAAAATGTGTTTGTTCAGTA  692

seq1  AAGATCCGAGTGACTGGCAAGTACCACGCACTGTGCTAGGCATTAGGAAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCCGAGTGACTGGCAAGTACCACGCACTGTGCTAGGCATTAGGAAG  742

seq1  TAGTAAGAACAAGCTCATGCCTTTCATCCCAGCACTTGGGAGGCAGAGGT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGAACAAGCTCATGCCTTTCATCCCAGCACTTGGGAGGCAGAGGT  792

seq1  AGGTGATTTATGAGTTCAATGCCAGCCTGGTCTACAGAGTGAGTTCCAGG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATTTATGAGTTCAATGCCAGCCTGGTCTACAGAGTGAGTTCCAGG  842

seq1  AAAGCCAGGGCTACACAGAGAAATCCTGTCTCAAAAAAAAAAAAAAAAAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAGGGCTACACAGAGAAATCCTGTCTCAAAAAAAAAAAAAAAAAA  892

seq1  AAAGAAGAAGAAGAAGAATATGAAGAAGAAGAAGAAGAAGAAGAAGAAGA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAAGAAGAAGAATATGAAGAAGAAGAAGAAGAAGAAGAAGAAGA  942

seq1  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAACAAACAGAATGCCAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAACAAACAGAATGCCAT  992

seq1  GTCTGTAGTTCAACCTCAGGTCATCACAAGCCTTATGGAAAACTAAAGTG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTAGTTCAACCTCAGGTCATCACAAGCCTTATGGAAAACTAAAGTG  1042

seq1  GAAAGTGGAGTGAAAGGACACTGGATATTAGATGACTGAAGAACATTCTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGGAGTGAAAGGACACTGGATATTAGATGACTGAAGAACATTCTC  1092

seq1  TGAAGAACTGATACTTGAATACAATTATTTCAAAACAGAAATTCCTGAGT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAACTGATACTTGAATACAATTATTTCAAAACAGAAATTCCTGAGT  1142

seq1  CACTAGCAAAATGTCAAACATACAAACTTTTTAAAGAATTC  1182
      |||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGCAAAATGTCAAACATACAAACTTTTTAAAGAATTC  1183