BAC Information

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BAC

Clone NameB6Ng01-186I13
Chromosome5 (Build37)
Map Location 113,658,573 - 113,659,693
singlet/doubletsinglet
Overlap geneGm854
Upstream geneCryba4, Crybb1, Tpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l, EG625464, Myo18b, Adrbk2, Crybb2, LOC100042920, Crybb3, 2900026A02Rik
Downstream geneRutbc2, Aym1, C530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186I13.bB6Ng01-186I13.g
ACCGA011350GA011351
length1,2401,107
definitionB6Ng01-186I13.b B6Ng01-186I13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tcatctttctggcctctgtattcacatgtataaccccaacacacacacac
acacacacacacacacacaccaacacatacatacatgcatatgcacacac
acacacccatgcacacacatacacacccaacatacactgacacacacaca
tgtatacacacccaacacacaatatatacatacacacagacacacacaga
tacacacatgcatgcacacacagacacacacacatacacccaatataata
taacacatactcacacacatggacacctacatgtagatacacagacttac
acccatatgcacaaatacacatttacacacacaatcccccaacacacaca
tatacacaattcaaaacaaaatatcttcataaagagtaccaagaacagtt
aatgaagaaaacaacaactttcctgactaatgggatcataggagccaatg
ttcacagagtgaagtggactccttcccctgctgtgcaccagggttaagag
agagagaaaagggccagcatcataccattcttgatgggaacaaagactgt
catggccttgggcttcatgatttaagtatgaaacccatgacagaagtgag
agaagaaaaaggaaattgactcttcatcgaattaaaaatatgttttttct
tgaaaagatgccatcaagacagtgagaagacaaaccacagaatggaggga
gaacattgagagccataaagatggacttagagccagaatctgccaagagg
tttgcaattcaacaatgaagcaattgctaactaaaataagtgagcaaaga
atctgaatagatgcttctctaaaaaaagatagataaatggccaacaagtt
catggggagatcctcaacggtgaacatcacaatgcccacatgcacacaca
catacacatacacacaatgtagtggctattcctgggttgtcaacttgaca
atatttggaatgaactacaattcggaattggaaaggctcacagtgaccct
tatctggaaggcttggaaatccttatctggatcttgtttgaagatcttga
gccatagtggcctatgggattccagaaagattggaatctccgagtttaag
gaaacacacccttaatctggctactccttttcattctgggaaataaaggt
gtggtgaaacacaccattaatctggactacactttgcttgagaccaaata
ggaccatggcagaaaagggaatcctagacactctttgatc
gaattccaggacagccagggctatacagagaaaccctgtctcgaaaaaac
aaacaaacaaaacaaaacaacaacaacaacaaaaaaaaaccctgattatg
tcatgttccctactgtgttctgttgaggttgggggtcactgtgagatcag
gacttaaccattgagagactgggatccaaacacagtcaatctatggtcaa
ggatgtccaagtccagagaagaatacaacagcttcacatggtagctgtcc
agctgccacttctgtgcccctctgacctggggagcaggaccttggctctt
ggaccatctttgttctctggctggagctggtgggacagttgccgatgccc
taactgtggtaaactggtggtcactggcatgcccagcctctgccttaaac
cctccacatctccaagaacttgaggctgagaggcagaagcctcaactgta
ccacctgtgaatggaacagtgtccctcaccagctgctagcccaggttcct
tcagctgtagggaccagcaggatgactctacaggtaaaggcacttactgc
ggagccaggtggcctgagtttgattactgggatgcatgctgggacaccct
gcccctccactagacagaggagaaagtttccattctgttttcttcagtct
ccctgtaggtggactccggtaactggagcctggccggatgtgctttgggg
ttataaagcctcacttagctttctgggcacctgttccattgcagtgattt
tctcagtgactagtcttttcaaaggctcagaaacactggagcagctcagg
acagtggagggcggggccgtggggctccattccatagtctcctggcctag
aattacacccctgagatcagctgacccatgggaggttgtgggttctggtg
aaagggcaaaaccaagtccttttgttcactcaagggatgactctcacgta
ctgcctaacagccttcagagagatttctaatcttcagagtgaaagctcct
tccacttgaccatgcctctttcacccaccttacttgctagctagagcact
cctagcctgctgcttggtgccatggctaatgcttgaatcgggctccttaa
acatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_113658573_113659693
seq2: B6Ng01-186I13.g_66_1172

seq1  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAAAC  50

seq1  AAACAAACAAAACAAAACAACAACAACAACAAAAAAAAACCCTGATTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAAACAAAACAACAACAACAACAAAAAAAAACCCTGATTATG  100

seq1  TCATGTTCCCTACTGTGTTCTGTTGAGGTTGGGGGTCACTGTGAGATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTCCCTACTGTGTTCTGTTGAGGTTGGGGGTCACTGTGAGATCAG  150

seq1  GACTTAACCATTGAGAGACTGGGATCCAAACACAGTCAATCTATGGTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAACCATTGAGAGACTGGGATCCAAACACAGTCAATCTATGGTCAA  200

seq1  GGATGTCCAAGTCCAGAGAAGAATACAACAGCTTCACATGGTAGCTGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCCAAGTCCAGAGAAGAATACAACAGCTTCACATGGTAGCTGTCC  250

seq1  AGCTGCCACTTCTGTGCCCCTCTGACCTGGGGAGCAGGACCTTGGCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCACTTCTGTGCCCCTCTGACCTGGGGAGCAGGACCTTGGCTCTT  300

seq1  GGACCATCTTTGTTCTCTGGCTGGAGCTGGTGGGACAGTTGCCGATGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCATCTTTGTTCTCTGGCTGGAGCTGGTGGGACAGTTGCCGATGCCC  350

seq1  TAACTGTGGTAAACTGGTGGTCACTGGCATGCCCAGCCTCTGCCTTAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTGGTAAACTGGTGGTCACTGGCATGCCCAGCCTCTGCCTTAAAC  400

seq1  CCTCCACATCTCCAAGAACTTGAGGCTGAGAGGCAGAAGCCTCAACTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACATCTCCAAGAACTTGAGGCTGAGAGGCAGAAGCCTCAACTGTA  450

seq1  CCACCTGTGAATGGAACAGTGTCCCTCACCAGCTGCTAGCCCAGGTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGTGAATGGAACAGTGTCCCTCACCAGCTGCTAGCCCAGGTTCCT  500

seq1  TCAGCTGTAGGGACCAGCAGGATGACTCTACAGGTAAAGGCACTTACTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGTAGGGACCAGCAGGATGACTCTACAGGTAAAGGCACTTACTGC  550

seq1  GGAGCCAGGTGGCCTGAGTTTGATTACTGGGATGCATGCTGGGACACCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAGGTGGCCTGAGTTTGATTACTGGGATGCATGCTGGGACACCCT  600

seq1  GCCCCTCCACTAGACAGAGGAGAAAGTTTCCATTCTGTTTTCTTCAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCCACTAGACAGAGGAGAAAGTTTCCATTCTGTTTTCTTCAGTCT  650

seq1  CCCTGTAGGTGGACTCCGGTAACTGGAGCCTGGCCGGATGTGCTTTGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTAGGTGGACTCCGGTAACTGGAGCCTGGCCGGATGTGCTTTGGGG  700

seq1  TTATAAAGCCTCACTTAGCTTTCTGGGCACCTGTTCCATTGCAGTGATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGCCTCACTTAGCTTTCTGGGCACCTGTTCCATTGCAGTGATTT  750

seq1  TCTCAGGTGACTAGTCTTTTCAAAGGCTCAGAAACACTGGAGCAGCCCAG  800
      ||||| |||||||||||||||||||||||||||||||||||||||| |||
seq2  TCTCA-GTGACTAGTCTTTTCAAAGGCTCAGAAACACTGGAGCAGCTCAG  799

seq1  GACAGTGGAGGGCGGGGCCGTGGGGCTCCATTCCATAGTCTCCTGGCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGGAGGGCGGGGCCGTGGGGCTCCATTCCATAGTCTCCTGGCCTA  849

seq1  GAATTACACCCCTGAGATCAGCTGACCCATGGGAGG-TGTGGGTTCTGGT  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAATTACACCCCTGAGATCAGCTGACCCATGGGAGGTTGTGGGTTCTGGT  899

seq1  GAAAGGGCAAAACCAAGTCCTTT--GTCACCCAAGGGATGACTCCTCACG  947
      |||||||||||||||||||||||   |||| |||||||||||| ||||||
seq2  GAAAGGGCAAAACCAAGTCCTTTTGTTCACTCAAGGGATGACT-CTCACG  948

seq1  TACTGCCTAACAGCC-TCAGAGAGATTTCTAATC-TCAGAGTGAAAAGCT  995
      ||||||||||||||| |||||||||||||||||| |||||||| ||||||
seq2  TACTGCCTAACAGCCTTCAGAGAGATTTCTAATCTTCAGAGTG-AAAGCT  997

seq1  CCCTCCACTTGACCATGCCTTCTTTTTCCACCCACCTCTACCTGCCTAGC  1045
      || |||||||||||||||| |||||   ||||||||| ||| || |||||
seq2  CCTTCCACTTGACCATGCC-TCTTT---CACCCACCT-TACTTG-CTAGC  1041

seq1  TAGAGGCACATCCCCTAGCCTGGCTGCTGTGTGCCATGCCTAATGCTGGG  1095
      |||||   || | |||||||| ||||||  |||||||| |||||||| | 
seq2  TAGAG---CA-CTCCTAGCCT-GCTGCTTGGTGCCATGGCTAATGCTTGA  1086

seq1  ATTTCGGTGCTCCTTATAAACATGGA  1121
      |  |||| ||||||  ||||||||||
seq2  A--TCGG-GCTCCT--TAAACATGGA  1107